Wall clock time and date at job start Tue Mar 31 2020 15:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47093 * 55.41489 * 3 2 1 5 5 C 1.50708 * 109.47106 * 175.41626 * 3 2 1 6 6 H 1.07992 * 120.00239 * 114.55582 * 5 3 2 7 7 C 1.37881 * 119.99629 * 294.55006 * 5 3 2 8 8 N 1.31511 * 120.00099 * 350.60069 * 7 5 3 9 9 Si 1.86802 * 119.99681 * 170.60098 * 7 5 3 10 10 H 1.48501 * 109.47131 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47101 * 120.00414 * 9 7 5 12 12 H 1.48503 * 109.47067 * 240.00046 * 9 7 5 13 13 N 1.46502 * 109.47135 * 295.41136 * 3 2 1 14 14 C 1.36901 * 125.06850 * 300.02935 * 13 3 2 15 15 C 1.34206 * 109.92656 * 179.70887 * 14 13 3 16 16 C 1.50699 * 126.50419 * 180.31384 * 15 14 13 17 17 C 1.53122 * 109.51758 * 59.98101 * 16 15 14 18 18 C 1.53050 * 109.27057 * 182.50509 * 17 16 15 19 19 N 1.46842 * 109.57779 * 59.08498 * 18 17 16 20 20 C 1.46852 * 111.19770 * 298.29297 * 19 18 17 21 21 C 1.53028 * 109.52546 * 61.73944 * 20 19 18 22 22 C 1.46531 * 106.99627 * 0.40619 * 15 14 13 23 23 C 1.39631 * 133.98578 * 179.88331 * 22 15 14 24 24 C 1.36608 * 119.80101 * 179.68197 * 23 22 15 25 25 C 1.39029 * 120.50232 * 359.97438 * 24 23 22 26 26 F 1.35093 * 119.69611 * 180.02562 * 25 24 23 27 27 C 1.37951 * 120.61133 * 359.97438 * 25 24 23 28 28 C 1.37692 * 125.06408 * 119.99905 * 13 3 2 29 29 H 1.09004 * 109.47069 * 65.14018 * 1 2 3 30 30 H 1.09005 * 109.46976 * 185.13713 * 1 2 3 31 31 H 1.08997 * 109.47467 * 305.13523 * 1 2 3 32 32 H 1.08994 * 109.47672 * 239.99638 * 2 1 3 33 33 H 1.09004 * 109.47472 * 119.99635 * 2 1 3 34 34 H 0.97001 * 119.99647 * 179.97438 * 8 7 5 35 35 H 1.08008 * 125.03500 * 359.97438 * 14 13 3 36 36 H 1.08998 * 109.52400 * 180.10788 * 16 15 14 37 37 H 1.09001 * 109.50361 * 302.37910 * 17 16 15 38 38 H 1.09001 * 109.50516 * 62.50079 * 17 16 15 39 39 H 1.08999 * 109.41104 * 299.06788 * 18 17 16 40 40 H 1.09004 * 109.46018 * 179.13522 * 18 17 16 41 41 H 1.00899 * 110.99817 * 62.38621 * 19 18 17 42 42 H 1.09005 * 109.45691 * 301.72142 * 20 19 18 43 43 H 1.08998 * 109.46014 * 181.76270 * 20 19 18 44 44 H 1.09005 * 109.50255 * 180.88291 * 21 20 19 45 45 H 1.09000 * 109.54003 * 60.78422 * 21 20 19 46 46 H 1.08003 * 120.09671 * 359.66232 * 23 22 15 47 47 H 1.07999 * 119.74893 * 180.02562 * 24 23 22 48 48 H 1.07994 * 120.11701 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6111 1.9795 0.8460 5 6 3.5427 1.4441 0.1136 6 1 4.1457 1.8105 -0.7040 7 6 4.1478 0.9778 1.2614 8 7 3.4216 0.7058 2.3236 9 14 5.9990 0.7323 1.3077 10 1 6.5811 1.1072 -0.0060 11 1 6.5852 1.5867 2.3714 12 1 6.3023 -0.6929 1.5944 13 7 1.6439 2.1005 -1.2476 14 6 2.0055 1.6900 -2.5025 15 6 1.4704 2.5071 -3.4230 16 6 1.6231 2.3953 -4.9181 17 6 1.0691 1.0479 -5.3895 18 6 1.2835 0.9140 -6.8990 19 7 2.7170 1.0088 -7.2027 20 6 3.2595 2.3133 -6.8019 21 6 3.1056 2.4883 -5.2895 22 6 0.7114 3.5298 -2.6984 23 6 -0.0490 4.6331 -3.0911 24 6 -0.6544 5.4116 -2.1458 25 6 -0.5198 5.1137 -0.7945 26 9 -1.1260 5.8943 0.1265 27 6 0.2261 4.0277 -0.3855 28 6 0.8519 3.2236 -1.3327 29 1 -0.3633 0.4320 -0.9325 30 1 -0.3633 -1.0236 0.0920 31 1 -0.3634 0.5914 0.8404 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8473 0.3774 3.1310 35 1 2.6258 0.8329 -2.7198 36 1 1.0749 3.2039 -5.4016 37 1 1.5904 0.2402 -4.8758 38 1 0.0036 0.9942 -5.1662 39 1 0.7497 1.7133 -7.4131 40 1 0.9040 -0.0509 -7.2355 41 1 3.2292 0.2555 -6.7688 42 1 2.7165 3.1060 -7.3165 43 1 4.3153 2.3648 -7.0680 44 1 3.4941 3.4632 -4.9945 45 1 3.6599 1.7044 -4.7734 46 1 -0.1580 4.8703 -4.1391 47 1 -1.2427 6.2645 -2.4506 48 1 0.3250 3.8035 0.6663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:28 Heat of formation + Delta-G solvation = -12.741047 kcal Electronic energy + Delta-G solvation = -29044.773521 eV Core-core repulsion = 25206.022046 eV Total energy + Delta-G solvation = -3838.751475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.43994 -40.94534 -38.63072 -36.64893 -34.72927 -32.88686 -31.82023 -30.79127 -30.47122 -29.15409 -27.77779 -26.68010 -23.97437 -23.18870 -22.79571 -22.39349 -21.48454 -20.69095 -19.99537 -18.73073 -16.92805 -16.78768 -16.34455 -15.73645 -15.58371 -15.18958 -14.97858 -14.65747 -14.47271 -14.18801 -14.16384 -13.76798 -13.63658 -13.29362 -13.20377 -12.96947 -12.71530 -12.43714 -12.26817 -12.21019 -11.90558 -11.69285 -11.37218 -11.33347 -11.19408 -11.14579 -11.02798 -10.75578 -10.61736 -10.50753 -10.36863 -10.25408 -10.16953 -10.04359 -9.41010 -9.00148 -8.70169 -8.39290 -7.59100 -6.97335 -6.37409 -4.45506 1.45468 1.94898 3.10700 3.19054 3.21319 3.26202 3.65960 4.16891 4.21448 4.28986 4.72631 4.79643 4.93641 5.04849 5.06913 5.13774 5.19627 5.29840 5.37325 5.42766 5.47509 5.57645 5.72986 5.84799 5.87701 5.88038 5.89527 5.95628 6.00188 6.03803 6.10114 6.13608 6.18395 6.26143 6.30432 6.43699 6.48395 6.57417 6.61552 6.67537 6.76370 6.87760 6.98318 7.05432 7.25331 7.28298 7.31713 7.37192 7.56023 7.73988 8.05224 8.07952 8.60942 9.21716 10.68426 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.005277 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.739450 B = 5305.044108 C = 7606.015420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.259 3.741 4 H 0.062 0.938 5 C -0.539 4.539 6 H 0.066 0.934 7 C 0.072 3.928 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.438 5.438 14 C 0.095 3.905 15 C -0.200 4.200 16 C 0.002 3.998 17 C -0.148 4.148 18 C 0.056 3.944 19 N -0.689 5.689 20 C 0.056 3.944 21 C -0.149 4.149 22 C -0.115 4.115 23 C -0.049 4.049 24 C -0.190 4.190 25 C 0.097 3.903 26 F -0.148 7.148 27 C -0.152 4.152 28 C 0.125 3.875 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.267 0.733 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.340 0.660 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 1.697 -13.091 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.160 3.840 4 H 0.079 0.921 5 C -0.577 4.577 6 H 0.084 0.916 7 C -0.132 4.132 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.114 5.114 14 C -0.035 4.035 15 C -0.207 4.207 16 C -0.017 4.017 17 C -0.187 4.187 18 C -0.073 4.073 19 N -0.317 5.317 20 C -0.073 4.073 21 C -0.189 4.189 22 C -0.120 4.120 23 C -0.068 4.068 24 C -0.210 4.210 25 C 0.077 3.923 26 F -0.127 7.127 27 C -0.173 4.173 28 C 0.014 3.986 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.173 0.827 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.773 1.636 -13.196 14.128 hybrid contribution 0.942 -0.128 1.664 1.916 sum -3.832 1.508 -11.532 12.245 Atomic orbital electron populations 1.21815 0.98116 1.00047 1.00652 1.21862 0.92920 0.98680 1.02463 1.19373 0.95933 0.89704 0.78999 0.92061 1.21266 0.89746 1.44281 1.02412 0.91593 1.24892 0.98949 0.94651 0.94735 1.69943 1.36088 1.43481 1.02285 0.86407 0.84440 0.78099 0.78428 1.19513 1.20711 1.20550 1.44911 1.37774 1.20927 1.07787 1.21400 0.99579 0.99515 0.83025 1.19843 1.07879 0.99224 0.93723 1.19289 0.95166 0.96879 0.90393 1.22343 1.01908 0.97683 0.96797 1.22037 0.89233 1.01976 0.94102 1.60708 1.03654 1.04726 1.62644 1.22038 1.00004 0.91663 0.93629 1.22349 0.96703 1.02899 0.96904 1.19052 1.02970 0.97909 0.92106 1.19900 0.95358 0.93006 0.98505 1.20367 1.06413 1.03224 0.90980 1.17082 0.97784 0.91459 0.86021 1.91435 1.81612 1.73532 1.66120 1.19873 1.01822 0.96044 0.99557 1.17842 0.96410 0.90544 0.93795 0.94010 0.94055 0.93399 0.93695 0.89119 0.92270 0.82657 0.91224 0.91947 0.91429 0.91172 0.91057 0.84307 0.91163 0.91019 0.91346 0.91830 0.86124 0.85764 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 37.16 0.36 -2.40 16 2 C -0.12 -2.54 5.27 -26.73 -0.14 -2.68 16 3 C 0.26 5.91 2.18 -69.08 -0.15 5.76 16 4 H 0.06 1.56 7.28 -51.93 -0.38 1.18 16 5 C -0.54 -13.51 8.43 -34.44 -0.29 -13.80 16 6 H 0.07 1.69 7.66 -52.49 -0.40 1.29 16 7 C 0.07 1.83 5.16 -17.82 -0.09 1.74 16 8 N -0.88 -23.13 12.16 55.43 0.67 -22.46 16 9 Si 0.90 19.89 29.55 -169.99 -5.02 14.86 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.44 -8.93 2.17 -108.56 -0.24 -9.17 16 14 C 0.09 1.71 9.38 -16.71 -0.16 1.55 16 15 C -0.20 -3.23 5.06 -102.70 -0.52 -3.75 16 16 C 0.00 0.02 2.65 -91.65 -0.24 -0.22 16 17 C -0.15 -1.67 5.27 -26.64 -0.14 -1.81 16 18 C 0.06 0.55 6.55 -3.83 -0.03 0.52 16 19 N -0.69 -6.97 6.87 -113.81 -0.78 -7.75 16 20 C 0.06 0.57 6.55 -3.84 -0.03 0.54 16 21 C -0.15 -1.77 5.27 -26.65 -0.14 -1.91 16 22 C -0.12 -2.02 6.35 -105.12 -0.67 -2.69 16 23 C -0.05 -0.75 10.05 -39.65 -0.40 -1.15 16 24 C -0.19 -2.90 9.95 -39.88 -0.40 -3.30 16 25 C 0.10 1.69 7.28 -39.39 -0.29 1.41 16 26 F -0.15 -2.56 17.25 2.25 0.04 -2.52 16 27 C -0.15 -2.91 9.78 -39.36 -0.39 -3.30 16 28 C 0.12 2.47 6.81 -83.99 -0.57 1.89 16 29 H 0.04 0.76 7.89 -51.93 -0.41 0.36 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.90 7.73 -51.93 -0.40 0.50 16 33 H 0.09 2.12 6.81 -51.93 -0.35 1.76 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.16 2.66 8.03 -52.48 -0.42 2.23 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.34 3.24 8.86 -39.29 -0.35 2.89 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 46 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 47 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.13 2.53 7.56 -52.49 -0.40 2.13 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -25.83 386.49 -11.49 -37.33 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.72 Total: 7.47 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -4.27 Total: -23.59 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.34 Total: -39.38 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -25.83 -11.49 -37.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.584 kcal (2) G-P(sol) polarization free energy of solvation -25.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds