Wall clock time and date at job start Tue Mar 31 2020 15:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47093 * 55.41489 * 3 2 1 5 5 C 1.50708 * 109.47106 * 175.41626 * 3 2 1 6 6 H 1.07992 * 120.00239 * 114.55582 * 5 3 2 7 7 C 1.37881 * 119.99629 * 294.55006 * 5 3 2 8 8 N 1.31511 * 120.00099 * 350.60069 * 7 5 3 9 9 Si 1.86802 * 119.99681 * 170.60098 * 7 5 3 10 10 H 1.48501 * 109.47131 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47101 * 120.00414 * 9 7 5 12 12 H 1.48503 * 109.47067 * 240.00046 * 9 7 5 13 13 N 1.46502 * 109.47135 * 295.41136 * 3 2 1 14 14 C 1.36901 * 125.06850 * 300.02935 * 13 3 2 15 15 C 1.34206 * 109.92656 * 179.70887 * 14 13 3 16 16 C 1.50699 * 126.50419 * 180.31384 * 15 14 13 17 17 C 1.53122 * 109.51758 * 59.98101 * 16 15 14 18 18 C 1.53050 * 109.27057 * 182.50509 * 17 16 15 19 19 N 1.46842 * 109.57779 * 59.08498 * 18 17 16 20 20 C 1.46852 * 111.19770 * 298.29297 * 19 18 17 21 21 C 1.53028 * 109.52546 * 61.73944 * 20 19 18 22 22 C 1.46531 * 106.99627 * 0.40619 * 15 14 13 23 23 C 1.39631 * 133.98578 * 179.88331 * 22 15 14 24 24 C 1.36608 * 119.80101 * 179.68197 * 23 22 15 25 25 C 1.39029 * 120.50232 * 359.97438 * 24 23 22 26 26 F 1.35093 * 119.69611 * 180.02562 * 25 24 23 27 27 C 1.37951 * 120.61133 * 359.97438 * 25 24 23 28 28 C 1.37692 * 125.06408 * 119.99905 * 13 3 2 29 29 H 1.09004 * 109.47069 * 65.14018 * 1 2 3 30 30 H 1.09005 * 109.46976 * 185.13713 * 1 2 3 31 31 H 1.08997 * 109.47467 * 305.13523 * 1 2 3 32 32 H 1.08994 * 109.47672 * 239.99638 * 2 1 3 33 33 H 1.09004 * 109.47472 * 119.99635 * 2 1 3 34 34 H 0.97001 * 119.99647 * 179.97438 * 8 7 5 35 35 H 1.08008 * 125.03500 * 359.97438 * 14 13 3 36 36 H 1.08998 * 109.52400 * 180.10788 * 16 15 14 37 37 H 1.09001 * 109.50361 * 302.37910 * 17 16 15 38 38 H 1.09001 * 109.50516 * 62.50079 * 17 16 15 39 39 H 1.08999 * 109.41104 * 299.06788 * 18 17 16 40 40 H 1.09004 * 109.46018 * 179.13522 * 18 17 16 41 41 H 1.00899 * 110.99817 * 62.38621 * 19 18 17 42 42 H 1.09005 * 109.45691 * 301.72142 * 20 19 18 43 43 H 1.08998 * 109.46014 * 181.76270 * 20 19 18 44 44 H 1.09005 * 109.50255 * 180.88291 * 21 20 19 45 45 H 1.09000 * 109.54003 * 60.78422 * 21 20 19 46 46 H 1.08003 * 120.09671 * 359.66232 * 23 22 15 47 47 H 1.07999 * 119.74893 * 180.02562 * 24 23 22 48 48 H 1.07994 * 120.11701 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6111 1.9795 0.8460 5 6 3.5427 1.4441 0.1136 6 1 4.1457 1.8105 -0.7040 7 6 4.1478 0.9778 1.2614 8 7 3.4216 0.7058 2.3236 9 14 5.9990 0.7323 1.3077 10 1 6.5811 1.1072 -0.0060 11 1 6.5852 1.5867 2.3714 12 1 6.3023 -0.6929 1.5944 13 7 1.6439 2.1005 -1.2476 14 6 2.0055 1.6900 -2.5025 15 6 1.4704 2.5071 -3.4230 16 6 1.6231 2.3953 -4.9181 17 6 1.0691 1.0479 -5.3895 18 6 1.2835 0.9140 -6.8990 19 7 2.7170 1.0088 -7.2027 20 6 3.2595 2.3133 -6.8019 21 6 3.1056 2.4883 -5.2895 22 6 0.7114 3.5298 -2.6984 23 6 -0.0490 4.6331 -3.0911 24 6 -0.6544 5.4116 -2.1458 25 6 -0.5198 5.1137 -0.7945 26 9 -1.1260 5.8943 0.1265 27 6 0.2261 4.0277 -0.3855 28 6 0.8519 3.2236 -1.3327 29 1 -0.3633 0.4320 -0.9325 30 1 -0.3633 -1.0236 0.0920 31 1 -0.3634 0.5914 0.8404 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8473 0.3774 3.1310 35 1 2.6258 0.8329 -2.7198 36 1 1.0749 3.2039 -5.4016 37 1 1.5904 0.2402 -4.8758 38 1 0.0036 0.9942 -5.1662 39 1 0.7497 1.7133 -7.4131 40 1 0.9040 -0.0509 -7.2355 41 1 3.2292 0.2555 -6.7688 42 1 2.7165 3.1060 -7.3165 43 1 4.3153 2.3648 -7.0680 44 1 3.4941 3.4632 -4.9945 45 1 3.6599 1.7044 -4.7734 46 1 -0.1580 4.8703 -4.1391 47 1 -1.2427 6.2645 -2.4506 48 1 0.3250 3.8035 0.6663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174701.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:27 Heat of formation + Delta-G solvation = -23.368591 kcal Electronic energy + Delta-G solvation = -29045.234366 eV Core-core repulsion = 25206.022046 eV Total energy + Delta-G solvation = -3839.212320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.84060 -42.33961 -39.55485 -38.11323 -36.27992 -34.32083 -33.44171 -31.72110 -31.63832 -30.64382 -29.19216 -28.28519 -25.47267 -24.48712 -23.78676 -23.64478 -22.88930 -21.89830 -21.34318 -20.05882 -18.68491 -18.16298 -17.86153 -17.06333 -16.75807 -16.59076 -16.44153 -16.03430 -15.70228 -15.46989 -15.18601 -15.08818 -14.91129 -14.67458 -14.53770 -14.32569 -13.97657 -13.80995 -13.60658 -13.48567 -13.32317 -13.06328 -13.00427 -12.77019 -12.49527 -12.35831 -12.29349 -12.12841 -12.06501 -11.96816 -11.81002 -11.70135 -11.45740 -11.28721 -11.10033 -10.66131 -10.38291 -9.21492 -9.00733 -8.46378 -8.23045 -6.47237 0.07840 0.60656 1.32928 1.36410 1.46709 1.84909 2.14523 2.35315 2.84139 2.96666 3.39173 3.50423 3.72182 3.73579 4.02496 4.08333 4.16311 4.17184 4.23664 4.32583 4.33897 4.39068 4.49847 4.51311 4.57453 4.61619 4.62645 4.72656 4.78688 4.90783 4.99150 5.01486 5.06397 5.09906 5.10722 5.17377 5.20115 5.22543 5.26557 5.34157 5.37434 5.43671 5.48562 5.61060 5.67016 5.86688 5.93625 6.05397 6.20026 6.42548 6.51927 6.55883 6.72937 7.23692 8.72820 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.007738 B = 0.005277 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.739450 B = 5305.044108 C = 7606.015420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.269 3.731 4 H 0.023 0.977 5 C -0.550 4.550 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.909 5.909 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.453 5.453 14 C 0.068 3.932 15 C -0.176 4.176 16 C 0.004 3.996 17 C -0.142 4.142 18 C 0.062 3.938 19 N -0.692 5.692 20 C 0.063 3.937 21 C -0.144 4.144 22 C -0.127 4.127 23 C -0.035 4.035 24 C -0.182 4.182 25 C 0.098 3.902 26 F -0.149 7.149 27 C -0.183 4.183 28 C 0.097 3.903 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.269 0.731 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.342 0.658 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.162 0.838 47 H 0.161 0.839 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 2.279 -16.315 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.168 3.832 4 H 0.041 0.959 5 C -0.588 4.588 6 H 0.073 0.927 7 C -0.172 4.172 8 N -0.546 5.546 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.130 5.130 14 C -0.060 4.060 15 C -0.182 4.182 16 C -0.015 4.015 17 C -0.181 4.181 18 C -0.067 4.067 19 N -0.320 5.320 20 C -0.066 4.066 21 C -0.184 4.184 22 C -0.133 4.133 23 C -0.053 4.053 24 C -0.202 4.202 25 C 0.077 3.923 26 F -0.128 7.128 27 C -0.205 4.205 28 C -0.013 4.013 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.179 0.821 47 H 0.179 0.821 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.199 2.217 -16.447 17.392 hybrid contribution 1.014 -0.212 2.651 2.846 sum -4.185 2.006 -13.796 14.556 Atomic orbital electron populations 1.21670 0.96134 1.01284 1.00188 1.21669 0.94599 0.97279 1.01394 1.18962 0.94553 0.90277 0.79366 0.95934 1.21470 0.91082 1.44130 1.02132 0.92654 1.25602 1.02783 0.94415 0.94387 1.70043 1.37620 1.44231 1.02723 0.85501 0.79753 0.78228 0.78217 1.19255 1.20784 1.19659 1.44696 1.39090 1.21702 1.07550 1.21582 1.01100 1.00706 0.82575 1.20234 1.05417 0.97329 0.95256 1.19399 0.96052 0.98268 0.87763 1.22278 1.01457 0.96356 0.98000 1.22030 0.89111 1.02938 0.92669 1.60737 1.03919 1.04810 1.62523 1.22004 1.00722 0.91939 0.91967 1.22295 0.95790 1.01946 0.98347 1.19422 1.03718 0.99077 0.91059 1.20342 0.93233 0.91220 1.00503 1.20742 1.06002 1.03990 0.89465 1.17309 0.97080 0.90691 0.87183 1.91430 1.81495 1.73354 1.66495 1.19879 1.04076 0.97841 0.98681 1.18167 0.97137 0.90767 0.95256 0.93812 0.91667 0.94596 0.92988 0.91670 0.92167 0.82527 0.89830 0.92890 0.91624 0.90405 0.89960 0.84013 0.90334 0.90261 0.92208 0.93102 0.82068 0.82144 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.73 71.98 0.70 -4.46 16 2 C -0.11 -4.87 5.27 30.59 0.16 -4.71 16 3 C 0.27 13.02 2.18 44.25 0.10 13.12 16 4 H 0.02 1.26 7.28 -2.39 -0.02 1.24 16 5 C -0.55 -28.83 8.43 25.60 0.22 -28.62 16 6 H 0.06 2.95 7.66 -2.91 -0.02 2.93 16 7 C 0.03 1.56 5.16 84.66 0.44 2.00 16 8 N -0.91 -49.66 12.16 21.45 0.26 -49.40 16 9 Si 0.96 41.62 29.55 68.60 2.03 43.65 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.45 -19.28 2.17 -497.39 -1.08 -20.36 16 14 C 0.07 2.50 9.38 82.98 0.78 3.27 16 15 C -0.18 -5.49 5.06 -18.62 -0.09 -5.59 16 16 C 0.00 0.10 2.65 -11.46 -0.03 0.07 16 17 C -0.14 -2.86 5.27 30.65 0.16 -2.70 16 18 C 0.06 1.02 6.55 86.33 0.57 1.59 16 19 N -0.69 -12.05 6.87 -513.99 -3.53 -15.58 16 20 C 0.06 1.10 6.55 86.32 0.57 1.67 16 21 C -0.14 -3.15 5.27 30.64 0.16 -2.99 16 22 C -0.13 -4.32 6.35 -20.19 -0.13 -4.45 16 23 C -0.03 -0.94 10.05 22.22 0.22 -0.72 16 24 C -0.18 -5.04 9.95 22.08 0.22 -4.83 16 25 C 0.10 3.37 7.28 22.39 0.16 3.54 16 26 F -0.15 -5.10 17.25 44.97 0.78 -4.32 16 27 C -0.18 -7.39 9.78 22.41 0.22 -7.17 16 28 C 0.10 3.93 6.81 39.03 0.27 4.20 16 29 H 0.04 1.63 7.89 -2.38 -0.02 1.61 16 30 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 2.16 7.73 -2.39 -0.02 2.14 16 33 H 0.06 3.19 6.81 -2.38 -0.02 3.17 16 34 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.16 5.51 8.03 -2.91 -0.02 5.49 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.18 7.96 -2.39 -0.02 1.16 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.34 5.76 8.86 -89.69 -0.79 4.97 16 42 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.05 1.24 7.95 -2.39 -0.02 1.22 16 46 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 47 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 48 H 0.11 4.61 7.56 -2.91 -0.02 4.58 16 Total: -1.00 -58.12 386.49 3.29 -54.83 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.16 Total: 27.96 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 4.68 Total: -36.77 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -4.35 Total: -85.34 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -58.12 3.29 -54.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174701.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.458 kcal (2) G-P(sol) polarization free energy of solvation -58.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds