Wall clock time and date at job start Tue Mar 31 2020 15:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 H 1.09001 * 109.46932 * 304.99747 * 3 2 1 5 5 C 1.50694 * 109.46946 * 185.00290 * 3 2 1 6 6 H 1.08001 * 120.00225 * 239.99634 * 5 3 2 7 7 C 1.37881 * 120.00250 * 60.00085 * 5 3 2 8 8 N 1.31510 * 120.00162 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99901 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47052 * 90.00035 * 9 7 5 11 11 H 1.48504 * 109.46737 * 209.99516 * 9 7 5 12 12 H 1.48496 * 109.47082 * 329.99325 * 9 7 5 13 13 N 1.46498 * 109.47168 * 65.00203 * 3 2 1 14 14 C 1.36809 * 125.06765 * 59.97737 * 13 3 2 15 15 C 1.34240 * 109.92907 * 180.02562 * 14 13 3 16 16 C 1.50706 * 126.49533 * 179.97438 * 15 14 13 17 17 C 1.53120 * 109.57283 * 300.18405 * 16 15 14 18 18 C 1.53040 * 109.27503 * 177.59028 * 17 16 15 19 19 N 1.46850 * 109.52419 * 300.82105 * 18 17 16 20 20 C 1.46841 * 111.19924 * 61.73999 * 19 18 17 21 21 C 1.53042 * 109.52629 * 298.26169 * 20 19 18 22 22 C 1.46490 * 107.01103 * 0.26120 * 15 14 13 23 23 C 1.39670 * 133.96794 * 180.48095 * 22 15 14 24 24 C 1.37795 * 119.62816 * 179.55263 * 23 22 15 25 25 F 1.35103 * 119.83595 * 179.71743 * 24 23 22 26 26 C 1.39032 * 120.33034 * 359.74964 * 24 23 22 27 27 C 1.37717 * 120.65277 * 359.96830 * 26 24 23 28 28 C 1.37811 * 125.06556 * 239.99874 * 13 3 2 29 29 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46739 * 299.99865 * 1 2 3 31 31 H 1.08992 * 109.47119 * 60.00012 * 1 2 3 32 32 H 1.08996 * 109.47130 * 240.00424 * 2 1 3 33 33 H 1.08996 * 109.47508 * 119.99709 * 2 1 3 34 34 H 0.96995 * 120.00524 * 180.02562 * 8 7 5 35 35 H 1.07998 * 125.03942 * 359.97438 * 14 13 3 36 36 H 1.09002 * 109.52449 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.50326 * 297.52399 * 17 16 15 38 38 H 1.08999 * 109.50267 * 57.65056 * 17 16 15 39 39 H 1.09002 * 109.46407 * 180.80522 * 18 17 16 40 40 H 1.08999 * 109.46610 * 60.83611 * 18 17 16 41 41 H 1.00898 * 110.99871 * 185.84610 * 19 18 17 42 42 H 1.08998 * 109.46320 * 178.24106 * 20 19 18 43 43 H 1.08998 * 109.45897 * 58.27716 * 20 19 18 44 44 H 1.09003 * 109.49792 * 299.23877 * 21 20 19 45 45 H 1.08997 * 109.53473 * 179.13824 * 21 20 19 46 46 H 1.08000 * 120.18748 * 359.25895 * 23 22 15 47 47 H 1.08001 * 119.67551 * 179.97438 * 26 24 23 48 48 H 1.07994 * 120.02263 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8802 -1.3812 10 1 6.5538 -0.3519 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0975 1.2518 14 6 2.0225 1.6844 2.5024 15 6 1.4983 2.5027 3.4284 16 6 1.6680 2.3919 4.9218 17 6 1.1226 1.0439 5.4014 18 6 1.3526 0.9132 6.9087 19 7 2.7895 1.0105 7.1962 20 6 3.3256 2.3150 6.7873 21 6 3.1545 2.4875 5.2763 22 6 0.7244 3.5199 2.7127 23 6 -0.0291 4.6254 3.1138 24 6 -0.6449 5.4111 2.1640 25 9 -1.3794 6.4781 2.5476 26 6 -0.5146 5.1108 0.8127 27 6 0.2300 4.0273 0.4028 28 6 0.8604 3.2215 1.3451 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0617 -2.9496 35 1 2.6436 0.8264 2.7135 36 1 1.1240 3.1998 5.4112 37 1 0.0548 0.9873 5.1900 38 1 1.6401 0.2367 4.8829 39 1 0.9784 -0.0517 7.2510 40 1 0.8236 1.7125 7.4275 41 1 2.9759 0.8324 8.1716 42 1 4.3842 2.3683 7.0414 43 1 2.7873 3.1077 7.3067 44 1 3.7039 1.7030 4.7560 45 1 3.5385 3.4621 4.9750 46 1 -0.1324 4.8604 4.1629 47 1 -1.0022 5.7335 0.0772 48 1 0.3247 3.8037 -0.6495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:38 Heat of formation + Delta-G solvation = -9.083592 kcal Electronic energy + Delta-G solvation = -28997.683349 eV Core-core repulsion = 25159.090473 eV Total energy + Delta-G solvation = -3838.592876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.39104 -40.88065 -38.39895 -36.53830 -34.76211 -32.96160 -31.72908 -30.69768 -30.63235 -28.78480 -28.08168 -26.59861 -24.02320 -23.06839 -22.82254 -22.45330 -21.36640 -20.33192 -19.68765 -18.50052 -17.01664 -16.74717 -16.60321 -16.01212 -15.69777 -15.14119 -14.85467 -14.58087 -14.43600 -14.13449 -13.94982 -13.74558 -13.42642 -13.26361 -13.14242 -12.85673 -12.62999 -12.52755 -12.18300 -12.12030 -12.03057 -11.89879 -11.47866 -11.20445 -11.09784 -11.00466 -10.75095 -10.66404 -10.48302 -10.45408 -10.27574 -10.11746 -9.97551 -9.95274 -9.38496 -8.97774 -8.67121 -8.49619 -7.53468 -6.90223 -6.32127 -4.43790 1.48347 1.94914 3.14604 3.22214 3.24515 3.31274 3.75928 4.19170 4.19756 4.24142 4.71339 4.93924 4.97811 4.98335 5.08179 5.11294 5.30287 5.34200 5.46046 5.50806 5.51607 5.66790 5.78598 5.83992 5.86158 5.87282 5.99220 6.05833 6.10207 6.12162 6.17985 6.25850 6.30228 6.35312 6.41468 6.44351 6.57656 6.60031 6.68777 6.72682 6.84825 6.92524 7.00420 7.12671 7.28782 7.33177 7.38850 7.46634 7.64111 7.79629 8.11256 8.14274 8.63518 9.24803 10.71095 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.005045 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.804180 B = 5549.099121 C = 7641.186519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.262 3.738 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.066 0.934 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.439 5.439 14 C 0.105 3.895 15 C -0.206 4.206 16 C 0.000 4.000 17 C -0.109 4.109 18 C 0.058 3.942 19 N -0.690 5.690 20 C 0.058 3.942 21 C -0.110 4.110 22 C -0.082 4.082 23 C -0.113 4.113 24 C 0.052 3.948 25 F -0.154 7.154 26 C -0.149 4.149 27 C -0.087 4.087 28 C 0.092 3.908 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.160 0.840 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.337 0.663 42 H 0.071 0.929 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.128 0.872 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.612 2.416 12.503 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.163 3.837 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.084 0.916 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.730 3.270 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.115 5.115 14 C -0.026 4.026 15 C -0.213 4.213 16 C -0.019 4.019 17 C -0.147 4.147 18 C -0.071 4.071 19 N -0.321 5.321 20 C -0.071 4.071 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.132 4.132 24 C 0.032 3.968 25 F -0.133 7.133 26 C -0.169 4.169 27 C -0.107 4.107 28 C -0.017 4.017 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.177 0.823 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.155 0.845 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.146 0.854 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.320 1.850 11.393 12.324 hybrid contribution 0.507 0.727 0.469 1.002 sum -3.813 2.577 11.862 12.723 Atomic orbital electron populations 1.21815 0.98476 0.99845 1.00429 1.21964 0.92544 0.98640 1.03620 1.19338 0.95788 0.89993 0.78595 0.92717 1.21296 0.89971 1.39404 1.06696 0.91613 1.24877 0.99022 0.94357 0.95092 1.69834 1.35504 1.37415 1.09474 0.86402 0.84336 0.78780 0.77501 1.20267 1.20915 1.19678 1.44959 1.37801 1.20916 1.07828 1.21475 0.98910 0.99178 0.82991 1.19785 1.08209 0.99516 0.93785 1.19311 0.95395 0.96816 0.90385 1.21678 1.00884 0.97947 0.94143 1.21952 0.87844 1.00202 0.97088 1.60265 1.15225 1.32118 1.24521 1.21952 0.99322 0.89094 0.96706 1.21687 0.96533 1.02296 0.94245 1.18739 1.01161 0.96608 0.92242 1.20172 0.99477 0.95139 0.98451 1.17200 0.98720 0.87898 0.92995 1.91413 1.75607 1.54252 1.92015 1.20555 1.03081 0.99373 0.93885 1.19899 0.97892 0.94302 0.98581 1.18308 0.97760 0.91372 0.94305 0.94194 0.94195 0.93609 0.87230 0.93938 0.92254 0.82307 0.91748 0.91657 0.90994 0.91113 0.95563 0.84545 0.91076 0.95566 0.90897 0.91563 0.86014 0.85425 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.13 -2.76 5.23 -26.73 -0.14 -2.90 16 3 C 0.26 5.93 2.31 -69.08 -0.16 5.77 16 4 H 0.06 1.35 7.33 -51.93 -0.38 0.96 16 5 C -0.54 -13.36 8.48 -34.44 -0.29 -13.65 16 6 H 0.07 1.68 7.72 -52.49 -0.40 1.28 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -22.80 11.29 55.43 0.63 -22.17 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.44 -8.94 2.10 -108.57 -0.23 -9.17 16 14 C 0.11 1.95 9.42 -16.74 -0.16 1.79 16 15 C -0.21 -3.47 5.06 -102.71 -0.52 -3.99 16 16 C 0.00 0.00 2.64 -91.65 -0.24 -0.24 16 17 C -0.11 -1.36 5.28 -26.65 -0.14 -1.50 16 18 C 0.06 0.62 6.55 -3.83 -0.03 0.59 16 19 N -0.69 -7.34 6.84 -113.82 -0.78 -8.12 16 20 C 0.06 0.63 6.55 -3.83 -0.03 0.61 16 21 C -0.11 -1.43 5.28 -26.65 -0.14 -1.57 16 22 C -0.08 -1.48 6.35 -105.14 -0.67 -2.15 16 23 C -0.11 -1.88 10.07 -39.21 -0.40 -2.27 16 24 C 0.05 0.87 7.29 -39.45 -0.29 0.58 16 25 F -0.15 -2.49 17.26 2.25 0.04 -2.45 16 26 C -0.15 -2.41 9.99 -39.48 -0.39 -2.81 16 27 C -0.09 -1.55 9.80 -39.45 -0.39 -1.94 16 28 C 0.09 1.80 6.81 -83.95 -0.57 1.23 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.04 0.89 7.71 -51.93 -0.40 0.49 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.16 2.83 8.03 -52.49 -0.42 2.41 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.34 2.87 8.90 -39.29 -0.35 2.52 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 48 H 0.13 2.19 7.55 -52.49 -0.40 1.80 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -25.60 385.12 -11.51 -37.12 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.68 Total: 7.32 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -4.28 Total: -23.21 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.38 Total: -39.46 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -25.60 -11.51 -37.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.032 kcal (2) G-P(sol) polarization free energy of solvation -25.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds