Wall clock time and date at job start Tue Mar 31 2020 15:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 H 1.09001 * 109.46932 * 304.99747 * 3 2 1 5 5 C 1.50694 * 109.46946 * 185.00290 * 3 2 1 6 6 H 1.08001 * 120.00225 * 239.99634 * 5 3 2 7 7 C 1.37881 * 120.00250 * 60.00085 * 5 3 2 8 8 N 1.31510 * 120.00162 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99901 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47052 * 90.00035 * 9 7 5 11 11 H 1.48504 * 109.46737 * 209.99516 * 9 7 5 12 12 H 1.48496 * 109.47082 * 329.99325 * 9 7 5 13 13 N 1.46498 * 109.47168 * 65.00203 * 3 2 1 14 14 C 1.36809 * 125.06765 * 59.97737 * 13 3 2 15 15 C 1.34240 * 109.92907 * 180.02562 * 14 13 3 16 16 C 1.50706 * 126.49533 * 179.97438 * 15 14 13 17 17 C 1.53120 * 109.57283 * 300.18405 * 16 15 14 18 18 C 1.53040 * 109.27503 * 177.59028 * 17 16 15 19 19 N 1.46850 * 109.52419 * 300.82105 * 18 17 16 20 20 C 1.46841 * 111.19924 * 61.73999 * 19 18 17 21 21 C 1.53042 * 109.52629 * 298.26169 * 20 19 18 22 22 C 1.46490 * 107.01103 * 0.26120 * 15 14 13 23 23 C 1.39670 * 133.96794 * 180.48095 * 22 15 14 24 24 C 1.37795 * 119.62816 * 179.55263 * 23 22 15 25 25 F 1.35103 * 119.83595 * 179.71743 * 24 23 22 26 26 C 1.39032 * 120.33034 * 359.74964 * 24 23 22 27 27 C 1.37717 * 120.65277 * 359.96830 * 26 24 23 28 28 C 1.37811 * 125.06556 * 239.99874 * 13 3 2 29 29 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46739 * 299.99865 * 1 2 3 31 31 H 1.08992 * 109.47119 * 60.00012 * 1 2 3 32 32 H 1.08996 * 109.47130 * 240.00424 * 2 1 3 33 33 H 1.08996 * 109.47508 * 119.99709 * 2 1 3 34 34 H 0.96995 * 120.00524 * 180.02562 * 8 7 5 35 35 H 1.07998 * 125.03942 * 359.97438 * 14 13 3 36 36 H 1.09002 * 109.52449 * 180.02562 * 16 15 14 37 37 H 1.09002 * 109.50326 * 297.52399 * 17 16 15 38 38 H 1.08999 * 109.50267 * 57.65056 * 17 16 15 39 39 H 1.09002 * 109.46407 * 180.80522 * 18 17 16 40 40 H 1.08999 * 109.46610 * 60.83611 * 18 17 16 41 41 H 1.00898 * 110.99871 * 185.84610 * 19 18 17 42 42 H 1.08998 * 109.46320 * 178.24106 * 20 19 18 43 43 H 1.08998 * 109.45897 * 58.27716 * 20 19 18 44 44 H 1.09003 * 109.49792 * 299.23877 * 21 20 19 45 45 H 1.08997 * 109.53473 * 179.13824 * 21 20 19 46 46 H 1.08000 * 120.18748 * 359.25895 * 23 22 15 47 47 H 1.08001 * 119.67551 * 179.97438 * 26 24 23 48 48 H 1.07994 * 120.02263 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8802 -1.3812 10 1 6.5538 -0.3519 -0.7599 11 1 6.3834 0.9215 -2.8166 12 1 6.5575 2.0721 -0.6891 13 7 1.6525 2.0975 1.2518 14 6 2.0225 1.6844 2.5024 15 6 1.4983 2.5027 3.4284 16 6 1.6680 2.3919 4.9218 17 6 1.1226 1.0439 5.4014 18 6 1.3526 0.9132 6.9087 19 7 2.7895 1.0105 7.1962 20 6 3.3256 2.3150 6.7873 21 6 3.1545 2.4875 5.2763 22 6 0.7244 3.5199 2.7127 23 6 -0.0291 4.6254 3.1138 24 6 -0.6449 5.4111 2.1640 25 9 -1.3794 6.4781 2.5476 26 6 -0.5146 5.1108 0.8127 27 6 0.2300 4.0273 0.4028 28 6 0.8604 3.2215 1.3451 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0617 -2.9496 35 1 2.6436 0.8264 2.7135 36 1 1.1240 3.1998 5.4112 37 1 0.0548 0.9873 5.1900 38 1 1.6401 0.2367 4.8829 39 1 0.9784 -0.0517 7.2510 40 1 0.8236 1.7125 7.4275 41 1 2.9759 0.8324 8.1716 42 1 4.3842 2.3683 7.0414 43 1 2.7873 3.1077 7.3067 44 1 3.7039 1.7030 4.7560 45 1 3.5385 3.4621 4.9750 46 1 -0.1324 4.8604 4.1629 47 1 -1.0022 5.7335 0.0772 48 1 0.3247 3.8037 -0.6495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:38 Heat of formation + Delta-G solvation = -18.997375 kcal Electronic energy + Delta-G solvation = -28998.113243 eV Core-core repulsion = 25159.090473 eV Total energy + Delta-G solvation = -3839.022770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.69808 -42.30348 -39.38664 -38.02613 -36.30146 -34.37581 -33.36714 -31.94261 -31.62263 -30.32218 -29.44975 -28.23186 -25.49647 -24.48031 -23.83932 -23.75216 -22.81457 -21.72912 -20.95922 -19.81556 -18.67587 -18.12471 -17.88551 -17.36826 -17.07765 -16.48523 -16.43000 -15.93078 -15.67636 -15.45481 -15.05349 -15.01680 -14.72076 -14.61048 -14.51029 -14.16257 -13.96267 -13.80514 -13.59491 -13.52227 -13.34559 -13.23849 -13.04686 -12.92118 -12.72576 -12.24671 -12.17092 -12.05365 -11.89989 -11.80576 -11.70268 -11.62385 -11.45944 -11.10703 -11.03846 -10.60241 -10.39680 -9.29648 -8.95372 -8.40707 -8.16811 -6.42710 0.11109 0.56657 1.37621 1.40213 1.48863 1.88771 2.21002 2.40990 2.82813 3.02467 3.37011 3.39773 3.72424 3.81334 3.95571 4.09764 4.14554 4.18714 4.29193 4.37483 4.38676 4.42873 4.52007 4.58510 4.59728 4.64795 4.72614 4.76756 4.80432 4.85961 4.92490 5.00152 5.05473 5.11119 5.13145 5.16438 5.19187 5.25157 5.30705 5.37935 5.38489 5.42820 5.56238 5.69455 5.76479 5.91961 5.98010 6.06305 6.16408 6.45851 6.56759 6.62479 6.77275 7.29089 8.77065 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.005045 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.804180 B = 5549.099121 C = 7641.186519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.272 3.728 4 H 0.028 0.972 5 C -0.549 4.549 6 H 0.052 0.948 7 C 0.032 3.968 8 N -0.905 5.905 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.452 5.452 14 C 0.081 3.919 15 C -0.186 4.186 16 C 0.003 3.997 17 C -0.105 4.105 18 C 0.063 3.937 19 N -0.700 5.700 20 C 0.064 3.936 21 C -0.108 4.108 22 C -0.097 4.097 23 C -0.107 4.107 24 C 0.049 3.951 25 F -0.148 7.148 26 C -0.136 4.136 27 C -0.105 4.105 28 C 0.068 3.932 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.269 0.731 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.352 0.648 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 3.055 14.529 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.171 3.829 4 H 0.046 0.954 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.170 4.170 8 N -0.543 5.543 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.201 1.201 13 N -0.129 5.129 14 C -0.048 4.048 15 C -0.193 4.193 16 C -0.017 4.017 17 C -0.144 4.144 18 C -0.066 4.066 19 N -0.333 5.333 20 C -0.065 4.065 21 C -0.146 4.146 22 C -0.102 4.102 23 C -0.126 4.126 24 C 0.029 3.971 25 F -0.127 7.127 26 C -0.156 4.156 27 C -0.126 4.126 28 C -0.041 4.041 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.174 0.826 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.055 0.945 41 H 0.172 0.828 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.163 0.837 47 H 0.172 0.828 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.807 2.487 13.452 14.500 hybrid contribution 0.604 0.614 -0.142 0.873 sum -4.203 3.101 13.310 14.298 Atomic orbital electron populations 1.21669 0.96334 1.01069 1.00165 1.21776 0.94373 0.97555 1.02214 1.18963 0.94376 0.90414 0.79101 0.95387 1.21474 0.91353 1.39373 1.06495 0.92956 1.25518 1.02528 0.94100 0.94848 1.69930 1.36771 1.37830 1.09761 0.85558 0.80102 0.78620 0.77442 1.19607 1.20471 1.20067 1.44742 1.39017 1.21682 1.07461 1.21563 1.00303 1.00140 0.82810 1.20133 1.06090 0.97885 0.95145 1.19395 0.96154 0.97945 0.88171 1.21620 1.00515 0.96468 0.95746 1.21905 0.88030 1.01371 0.95320 1.60209 1.15293 1.32002 1.25814 1.21876 1.00234 0.89646 0.94763 1.21633 0.95620 1.01276 0.96071 1.18967 1.01976 0.97507 0.91759 1.20395 0.98299 0.94145 0.99745 1.17269 0.98715 0.88024 0.93125 1.91431 1.75422 1.53920 1.91952 1.20805 1.01704 0.98506 0.94564 1.20008 0.98981 0.95187 0.98380 1.18699 0.98279 0.91499 0.95620 0.92148 0.94238 0.93966 0.89644 0.94078 0.92149 0.82624 0.90777 0.91658 0.92574 0.89808 0.94491 0.82844 0.90073 0.94455 0.92749 0.92168 0.83676 0.82822 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 9.80 71.98 0.71 -4.40 16 2 C -0.12 -5.33 5.23 30.60 0.16 -5.17 16 3 C 0.27 12.84 2.31 44.25 0.10 12.94 16 4 H 0.03 1.46 7.33 -2.39 -0.02 1.44 16 5 C -0.55 -28.39 8.48 25.60 0.22 -28.18 16 6 H 0.05 2.78 7.72 -2.91 -0.02 2.76 16 7 C 0.03 1.62 5.29 84.66 0.45 2.07 16 8 N -0.91 -47.77 11.29 21.45 0.24 -47.53 16 9 Si 0.96 41.40 29.54 68.60 2.03 43.42 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.45 -19.04 2.10 -497.41 -1.04 -20.08 16 14 C 0.08 3.07 9.42 83.00 0.78 3.85 16 15 C -0.19 -6.21 5.06 -18.62 -0.09 -6.31 16 16 C 0.00 0.07 2.64 -11.46 -0.03 0.04 16 17 C -0.11 -2.50 5.28 30.65 0.16 -2.34 16 18 C 0.06 1.17 6.55 86.33 0.57 1.73 16 19 N -0.70 -13.22 6.84 -514.00 -3.52 -16.74 16 20 C 0.06 1.25 6.55 86.33 0.57 1.81 16 21 C -0.11 -2.71 5.28 30.65 0.16 -2.55 16 22 C -0.10 -3.44 6.35 -20.20 -0.13 -3.57 16 23 C -0.11 -3.34 10.07 22.51 0.23 -3.11 16 24 C 0.05 1.53 7.29 22.36 0.16 1.69 16 25 F -0.15 -4.41 17.26 44.97 0.78 -3.64 16 26 C -0.14 -4.23 9.99 22.34 0.22 -4.00 16 27 C -0.11 -3.81 9.80 22.35 0.22 -3.59 16 28 C 0.07 2.69 6.81 38.99 0.27 2.96 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.48 7.75 -2.38 -0.02 1.46 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 4.22 5.95 -2.39 -0.01 4.20 16 33 H 0.04 1.78 7.71 -2.39 -0.02 1.76 16 34 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.16 5.85 8.03 -2.91 -0.02 5.82 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.51 7.96 -2.39 -0.02 1.49 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.35 4.98 8.90 -89.70 -0.80 4.18 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 1.56 7.96 -2.39 -0.02 1.54 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 47 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 48 H 0.12 4.43 7.55 -2.91 -0.02 4.41 16 Total: -1.00 -55.22 385.12 3.35 -51.87 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.16 Total: 28.82 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 4.71 Total: -36.13 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -4.32 Total: -84.35 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -55.22 3.35 -51.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.871 kcal (2) G-P(sol) polarization free energy of solvation -55.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds