Wall clock time and date at job start Tue Mar 31 2020 15:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 H 1.09002 * 109.47278 * 55.42025 * 3 2 1 5 5 C 1.50703 * 109.47344 * 175.41723 * 3 2 1 6 6 H 1.08005 * 120.00115 * 114.55213 * 5 3 2 7 7 C 1.37873 * 119.99972 * 294.55964 * 5 3 2 8 8 N 1.31517 * 120.00043 * 350.59510 * 7 5 3 9 9 Si 1.86802 * 120.00113 * 170.59900 * 7 5 3 10 10 H 1.48501 * 109.47307 * 59.99364 * 9 7 5 11 11 H 1.48501 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46698 * 299.99758 * 9 7 5 13 13 N 1.46504 * 109.47525 * 295.42036 * 3 2 1 14 14 C 1.36885 * 125.05972 * 299.69824 * 13 3 2 15 15 C 1.34209 * 109.91882 * 179.81072 * 14 13 3 16 16 C 1.50701 * 126.50620 * 180.16381 * 15 14 13 17 17 C 1.53124 * 109.51959 * 60.00134 * 16 15 14 18 18 C 1.53035 * 109.27462 * 182.43979 * 17 16 15 19 19 N 1.46842 * 109.52634 * 59.18272 * 18 17 16 20 20 C 1.46844 * 111.19850 * 298.25731 * 19 18 17 21 21 C 1.53035 * 109.52484 * 61.73814 * 20 19 18 22 22 C 1.46503 * 106.98939 * 0.43586 * 15 14 13 23 23 C 1.37698 * 125.06504 * 119.99990 * 13 3 2 24 24 C 1.39122 * 133.41194 * 0.02562 * 23 13 3 25 25 C 1.37753 * 119.96492 * 179.97438 * 24 23 13 26 26 C 1.38795 * 120.69520 * 0.02562 * 25 24 23 27 27 C 1.37874 * 120.34931 * 0.02562 * 26 25 24 28 28 F 1.35106 * 120.19328 * 179.97438 * 27 26 25 29 29 H 1.08996 * 109.47222 * 185.13361 * 1 2 3 30 30 H 1.09000 * 109.46929 * 305.13482 * 1 2 3 31 31 H 1.09000 * 109.47293 * 65.12955 * 1 2 3 32 32 H 1.08999 * 109.47018 * 240.00306 * 2 1 3 33 33 H 1.09000 * 109.46919 * 120.00121 * 2 1 3 34 34 H 0.97000 * 119.99504 * 180.02562 * 8 7 5 35 35 H 1.08012 * 125.04239 * 359.97438 * 14 13 3 36 36 H 1.09001 * 109.52638 * 180.19170 * 16 15 14 37 37 H 1.08992 * 109.50544 * 302.38335 * 17 16 15 38 38 H 1.08996 * 109.49902 * 62.50194 * 17 16 15 39 39 H 1.08998 * 109.46773 * 299.16057 * 18 17 16 40 40 H 1.09007 * 109.45998 * 179.19926 * 18 17 16 41 41 H 1.00902 * 111.00088 * 62.35133 * 19 18 17 42 42 H 1.09006 * 109.46123 * 301.72646 * 20 19 18 43 43 H 1.09001 * 109.46758 * 181.75697 * 20 19 18 44 44 H 1.08999 * 109.50658 * 180.88250 * 21 20 19 45 45 H 1.09003 * 109.53440 * 60.78518 * 21 20 19 46 46 H 1.07995 * 120.01731 * 359.95554 * 24 23 13 47 47 H 1.08000 * 119.65064 * 179.97438 * 25 24 23 48 48 H 1.07994 * 119.82638 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5428 1.4440 0.1135 6 1 4.1457 1.8104 -0.7042 7 6 4.1479 0.9775 1.2612 8 7 3.4217 0.7055 2.3235 9 14 5.9991 0.7320 1.3074 10 1 6.6770 2.0270 1.0453 11 1 6.3980 0.2256 2.6452 12 1 6.3939 -0.2526 0.2681 13 7 1.6439 2.1006 -1.2475 14 6 2.0106 1.6939 -2.5020 15 6 1.4757 2.5112 -3.4223 16 6 1.6357 2.4050 -4.9170 17 6 1.0902 1.0566 -5.3955 18 6 1.3107 0.9292 -6.9045 19 7 2.7453 1.0301 -7.2012 20 6 3.2813 2.3350 -6.7935 21 6 3.1196 2.5045 -5.2812 22 6 0.7120 3.5301 -2.6978 23 6 0.8519 3.2239 -1.3324 24 6 0.2284 4.0280 -0.3838 25 6 -0.5183 5.1136 -0.7858 26 6 -0.6583 5.4175 -2.1328 27 6 -0.0503 4.6341 -3.0906 28 9 -0.1891 4.9325 -4.4009 29 1 -0.3633 -1.0235 0.0919 30 1 -0.3633 0.5914 0.8404 31 1 -0.3634 0.4322 -0.9323 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8476 0.3777 3.1310 35 1 2.6356 0.8401 -2.7192 36 1 1.0870 3.2132 -5.4005 37 1 1.6128 0.2497 -4.8819 38 1 0.0240 0.9973 -5.1772 39 1 0.7764 1.7283 -7.4184 40 1 0.9362 -0.0359 -7.2460 41 1 3.2581 0.2771 -6.7674 42 1 2.7378 3.1277 -7.3079 43 1 4.3381 2.3912 -7.0544 44 1 3.5033 3.4796 -4.9812 45 1 3.6744 1.7208 -4.7653 46 1 0.3294 3.8012 0.6672 47 1 -1.0006 5.7342 -0.0451 48 1 -1.2474 6.2717 -2.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:42 Heat of formation + Delta-G solvation = -12.809863 kcal Electronic energy + Delta-G solvation = -29356.411418 eV Core-core repulsion = 25517.656959 eV Total energy + Delta-G solvation = -3838.754459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.42212 -40.88564 -38.59690 -36.64596 -34.82762 -32.77303 -31.81417 -30.73967 -30.18880 -29.11566 -27.99010 -26.67240 -23.92331 -23.16050 -22.74658 -22.24298 -21.62175 -20.69695 -19.92578 -18.83401 -16.98236 -16.57924 -16.25583 -15.54576 -15.51445 -15.23207 -15.06051 -14.60401 -14.54469 -14.26004 -14.14954 -14.06987 -13.69123 -13.24325 -13.09826 -12.72551 -12.54514 -12.40480 -12.16775 -12.12277 -11.85072 -11.69417 -11.44305 -11.15897 -11.13443 -11.08134 -11.00486 -10.88319 -10.79644 -10.47953 -10.34620 -10.21509 -10.16362 -10.05550 -9.46560 -8.80130 -8.69961 -8.34891 -7.71878 -6.90471 -6.37603 -4.45977 1.45305 1.99243 3.13214 3.18769 3.18976 3.25468 3.69162 4.16643 4.21376 4.33626 4.73629 4.79474 4.93240 5.11570 5.11914 5.18350 5.24879 5.28347 5.44037 5.48148 5.53344 5.61233 5.75245 5.78342 5.89194 5.92446 5.95330 5.95570 6.08196 6.09098 6.12749 6.16004 6.22446 6.24151 6.35216 6.47552 6.50957 6.55194 6.64008 6.75175 6.81633 6.88775 7.02833 7.04686 7.22313 7.27497 7.35832 7.37730 7.55381 7.73521 8.04820 8.08629 8.59999 9.21178 10.67861 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.004956 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.864182 B = 5647.830773 C = 7292.077042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.261 3.739 4 H 0.063 0.937 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.438 5.438 14 C 0.093 3.907 15 C -0.193 4.193 16 C -0.004 4.004 17 C -0.147 4.147 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.057 3.943 21 C -0.148 4.148 22 C -0.141 4.141 23 C 0.127 3.873 24 C -0.125 4.125 25 C -0.092 4.092 26 C -0.195 4.195 27 C 0.132 3.868 28 F -0.147 7.147 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.157 0.843 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.339 0.661 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 2.192 -10.522 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.162 3.838 4 H 0.081 0.919 5 C -0.579 4.579 6 H 0.083 0.917 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.114 5.114 14 C -0.037 4.037 15 C -0.200 4.200 16 C -0.023 4.023 17 C -0.186 4.186 18 C -0.073 4.073 19 N -0.317 5.317 20 C -0.073 4.073 21 C -0.187 4.187 22 C -0.147 4.147 23 C 0.016 3.984 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.215 4.215 27 C 0.112 3.888 28 F -0.125 7.125 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.202 2.105 -10.709 12.090 hybrid contribution 1.012 -0.181 1.177 1.563 sum -4.190 1.924 -9.532 10.588 Atomic orbital electron populations 1.21813 0.98105 1.00050 1.00645 1.21866 0.92934 0.98699 1.02469 1.19357 0.95857 0.89672 0.78907 0.91942 1.21199 0.89778 1.44466 1.02414 0.91715 1.24876 0.98919 0.94607 0.94720 1.69923 1.36241 1.43396 1.02273 0.86516 0.84443 0.78925 0.77462 1.19984 1.20926 1.19887 1.44950 1.37632 1.20994 1.07785 1.21392 0.99627 0.99589 0.83060 1.19793 1.07380 0.98899 0.93924 1.19381 0.95345 0.97225 0.90340 1.22321 1.01850 0.97572 0.96846 1.22033 0.89210 1.01968 0.94112 1.60707 1.03701 1.04670 1.62579 1.22035 1.00008 0.91693 0.93575 1.22334 0.96628 1.02772 0.96989 1.18913 1.04346 0.97925 0.93514 1.18025 0.96537 0.90590 0.93265 1.20138 1.00121 0.95820 0.98462 1.20428 0.99245 0.96894 0.94652 1.20627 1.05898 1.02188 0.92768 1.17021 0.99401 0.95144 0.77213 1.91398 1.94396 1.92853 1.33891 0.94070 0.93360 0.94028 0.93719 0.89097 0.92165 0.82540 0.90688 0.91975 0.91545 0.91120 0.91040 0.84363 0.91124 0.90998 0.91450 0.91872 0.85861 0.85615 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.73 37.16 0.36 -2.37 16 2 C -0.12 -2.54 5.27 -26.73 -0.14 -2.68 16 3 C 0.26 5.90 2.17 -69.08 -0.15 5.75 16 4 H 0.06 1.55 7.27 -51.93 -0.38 1.17 16 5 C -0.54 -13.48 8.43 -34.44 -0.29 -13.77 16 6 H 0.06 1.65 7.66 -52.48 -0.40 1.25 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -22.85 12.16 55.43 0.67 -22.17 16 9 Si 0.90 19.80 29.55 -169.99 -5.02 14.78 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.44 -8.98 2.17 -108.57 -0.24 -9.22 16 14 C 0.09 1.74 9.37 -16.72 -0.16 1.58 16 15 C -0.19 -3.39 5.06 -102.71 -0.52 -3.91 16 16 C 0.00 -0.05 2.65 -91.64 -0.24 -0.30 16 17 C -0.15 -1.85 5.27 -26.65 -0.14 -1.99 16 18 C 0.06 0.62 6.55 -3.84 -0.03 0.59 16 19 N -0.69 -7.63 6.87 -113.82 -0.78 -8.41 16 20 C 0.06 0.64 6.55 -3.84 -0.03 0.61 16 21 C -0.15 -1.95 5.26 -26.65 -0.14 -2.09 16 22 C -0.14 -2.66 6.33 -105.09 -0.67 -3.32 16 23 C 0.13 2.50 6.81 -84.00 -0.57 1.93 16 24 C -0.12 -2.23 9.80 -39.43 -0.39 -2.62 16 25 C -0.09 -1.41 10.01 -39.55 -0.40 -1.80 16 26 C -0.19 -3.00 10.01 -39.51 -0.40 -3.40 16 27 C 0.13 2.30 7.34 -39.14 -0.29 2.01 16 28 F -0.15 -2.48 16.02 2.25 0.04 -2.45 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.76 7.89 -51.93 -0.41 0.35 16 32 H 0.04 0.90 7.75 -51.93 -0.40 0.50 16 33 H 0.09 2.10 6.81 -51.93 -0.35 1.75 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.16 2.76 8.05 -52.48 -0.42 2.34 16 36 H 0.07 1.15 6.85 -51.93 -0.36 0.79 16 37 H 0.06 0.79 7.96 -51.93 -0.41 0.38 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.34 3.50 8.86 -39.29 -0.35 3.16 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.85 7.95 -51.93 -0.41 0.44 16 46 H 0.12 2.16 7.55 -52.49 -0.40 1.77 16 47 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 48 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -25.75 384.03 -11.46 -37.21 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -7.66 Total: 8.49 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -4.26 Total: -24.01 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.34 Total: -39.81 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -25.75 -11.46 -37.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.401 kcal (2) G-P(sol) polarization free energy of solvation -25.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds