Wall clock time and date at job start Tue Mar 31 2020 15:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 H 1.09002 * 109.47278 * 55.42025 * 3 2 1 5 5 C 1.50703 * 109.47344 * 175.41723 * 3 2 1 6 6 H 1.08005 * 120.00115 * 114.55213 * 5 3 2 7 7 C 1.37873 * 119.99972 * 294.55964 * 5 3 2 8 8 N 1.31517 * 120.00043 * 350.59510 * 7 5 3 9 9 Si 1.86802 * 120.00113 * 170.59900 * 7 5 3 10 10 H 1.48501 * 109.47307 * 59.99364 * 9 7 5 11 11 H 1.48501 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46698 * 299.99758 * 9 7 5 13 13 N 1.46504 * 109.47525 * 295.42036 * 3 2 1 14 14 C 1.36885 * 125.05972 * 299.69824 * 13 3 2 15 15 C 1.34209 * 109.91882 * 179.81072 * 14 13 3 16 16 C 1.50701 * 126.50620 * 180.16381 * 15 14 13 17 17 C 1.53124 * 109.51959 * 60.00134 * 16 15 14 18 18 C 1.53035 * 109.27462 * 182.43979 * 17 16 15 19 19 N 1.46842 * 109.52634 * 59.18272 * 18 17 16 20 20 C 1.46844 * 111.19850 * 298.25731 * 19 18 17 21 21 C 1.53035 * 109.52484 * 61.73814 * 20 19 18 22 22 C 1.46503 * 106.98939 * 0.43586 * 15 14 13 23 23 C 1.37698 * 125.06504 * 119.99990 * 13 3 2 24 24 C 1.39122 * 133.41194 * 0.02562 * 23 13 3 25 25 C 1.37753 * 119.96492 * 179.97438 * 24 23 13 26 26 C 1.38795 * 120.69520 * 0.02562 * 25 24 23 27 27 C 1.37874 * 120.34931 * 0.02562 * 26 25 24 28 28 F 1.35106 * 120.19328 * 179.97438 * 27 26 25 29 29 H 1.08996 * 109.47222 * 185.13361 * 1 2 3 30 30 H 1.09000 * 109.46929 * 305.13482 * 1 2 3 31 31 H 1.09000 * 109.47293 * 65.12955 * 1 2 3 32 32 H 1.08999 * 109.47018 * 240.00306 * 2 1 3 33 33 H 1.09000 * 109.46919 * 120.00121 * 2 1 3 34 34 H 0.97000 * 119.99504 * 180.02562 * 8 7 5 35 35 H 1.08012 * 125.04239 * 359.97438 * 14 13 3 36 36 H 1.09001 * 109.52638 * 180.19170 * 16 15 14 37 37 H 1.08992 * 109.50544 * 302.38335 * 17 16 15 38 38 H 1.08996 * 109.49902 * 62.50194 * 17 16 15 39 39 H 1.08998 * 109.46773 * 299.16057 * 18 17 16 40 40 H 1.09007 * 109.45998 * 179.19926 * 18 17 16 41 41 H 1.00902 * 111.00088 * 62.35133 * 19 18 17 42 42 H 1.09006 * 109.46123 * 301.72646 * 20 19 18 43 43 H 1.09001 * 109.46758 * 181.75697 * 20 19 18 44 44 H 1.08999 * 109.50658 * 180.88250 * 21 20 19 45 45 H 1.09003 * 109.53440 * 60.78518 * 21 20 19 46 46 H 1.07995 * 120.01731 * 359.95554 * 24 23 13 47 47 H 1.08000 * 119.65064 * 179.97438 * 25 24 23 48 48 H 1.07994 * 119.82638 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5428 1.4440 0.1135 6 1 4.1457 1.8104 -0.7042 7 6 4.1479 0.9775 1.2612 8 7 3.4217 0.7055 2.3235 9 14 5.9991 0.7320 1.3074 10 1 6.6770 2.0270 1.0453 11 1 6.3980 0.2256 2.6452 12 1 6.3939 -0.2526 0.2681 13 7 1.6439 2.1006 -1.2475 14 6 2.0106 1.6939 -2.5020 15 6 1.4757 2.5112 -3.4223 16 6 1.6357 2.4050 -4.9170 17 6 1.0902 1.0566 -5.3955 18 6 1.3107 0.9292 -6.9045 19 7 2.7453 1.0301 -7.2012 20 6 3.2813 2.3350 -6.7935 21 6 3.1196 2.5045 -5.2812 22 6 0.7120 3.5301 -2.6978 23 6 0.8519 3.2239 -1.3324 24 6 0.2284 4.0280 -0.3838 25 6 -0.5183 5.1136 -0.7858 26 6 -0.6583 5.4175 -2.1328 27 6 -0.0503 4.6341 -3.0906 28 9 -0.1891 4.9325 -4.4009 29 1 -0.3633 -1.0235 0.0919 30 1 -0.3633 0.5914 0.8404 31 1 -0.3634 0.4322 -0.9323 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8476 0.3777 3.1310 35 1 2.6356 0.8401 -2.7192 36 1 1.0870 3.2132 -5.4005 37 1 1.6128 0.2497 -4.8819 38 1 0.0240 0.9973 -5.1772 39 1 0.7764 1.7283 -7.4184 40 1 0.9362 -0.0359 -7.2460 41 1 3.2581 0.2771 -6.7674 42 1 2.7378 3.1277 -7.3079 43 1 4.3381 2.3912 -7.0544 44 1 3.5033 3.4796 -4.9812 45 1 3.6744 1.7208 -4.7653 46 1 0.3294 3.8012 0.6672 47 1 -1.0006 5.7342 -0.0451 48 1 -1.2474 6.2717 -2.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:41 Heat of formation + Delta-G solvation = -23.198223 kcal Electronic energy + Delta-G solvation = -29356.861891 eV Core-core repulsion = 25517.656959 eV Total energy + Delta-G solvation = -3839.204932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.76420 -42.30722 -39.63901 -38.08581 -36.38703 -34.27951 -33.39013 -31.71898 -31.50375 -30.56350 -29.43526 -28.27520 -25.45446 -24.51586 -23.72683 -23.60476 -23.05377 -21.95577 -21.31798 -20.20654 -18.72075 -17.98310 -17.73556 -16.86015 -16.78586 -16.59915 -16.49837 -16.14888 -15.63374 -15.58581 -15.54292 -15.22411 -14.90512 -14.74349 -14.47611 -14.07350 -13.89561 -13.72271 -13.64354 -13.43911 -13.14018 -13.12662 -13.02761 -12.74157 -12.56533 -12.33021 -12.22969 -12.15620 -12.13941 -12.09623 -11.91516 -11.75693 -11.51404 -11.32365 -11.13945 -10.62994 -10.21368 -9.28914 -9.13470 -8.43096 -8.19386 -6.44680 0.07838 0.64989 1.36526 1.38117 1.45259 1.81255 2.15953 2.37335 2.82412 2.98745 3.39026 3.44353 3.63528 3.83283 3.99875 4.04038 4.08380 4.17980 4.26068 4.27508 4.31656 4.35976 4.46153 4.49204 4.52882 4.55599 4.57931 4.77095 4.84156 4.88071 4.94013 4.97281 5.01559 5.08412 5.09752 5.12501 5.13939 5.21491 5.28610 5.31522 5.34643 5.48363 5.52633 5.61149 5.62853 5.83732 5.90162 6.03713 6.11253 6.42748 6.50461 6.52174 6.73702 7.25794 8.74204 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.004956 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.864182 B = 5647.830773 C = 7292.077042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C 0.272 3.728 4 H 0.033 0.967 5 C -0.553 4.553 6 H 0.052 0.948 7 C 0.034 3.966 8 N -0.905 5.905 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.267 1.267 13 N -0.451 5.451 14 C 0.073 3.927 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.139 4.139 18 C 0.062 3.938 19 N -0.687 5.687 20 C 0.064 3.936 21 C -0.142 4.142 22 C -0.163 4.163 23 C 0.101 3.899 24 C -0.148 4.148 25 C -0.075 4.075 26 C -0.184 4.184 27 C 0.120 3.880 28 F -0.145 7.145 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.160 0.840 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.345 0.655 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.117 0.883 47 H 0.165 0.835 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 2.714 -11.946 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.051 0.949 5 C -0.591 4.591 6 H 0.070 0.930 7 C -0.168 4.168 8 N -0.542 5.542 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.192 1.192 13 N -0.128 5.128 14 C -0.055 4.055 15 C -0.190 4.190 16 C -0.021 4.021 17 C -0.179 4.179 18 C -0.067 4.067 19 N -0.316 5.316 20 C -0.066 4.066 21 C -0.181 4.181 22 C -0.169 4.169 23 C -0.009 4.009 24 C -0.169 4.169 25 C -0.094 4.094 26 C -0.204 4.204 27 C 0.100 3.900 28 F -0.123 7.123 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.177 0.823 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.163 0.837 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.135 0.865 47 H 0.182 0.818 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.743 2.626 -12.159 13.701 hybrid contribution 1.103 -0.219 1.612 1.966 sum -4.640 2.407 -10.547 11.771 Atomic orbital electron populations 1.21668 0.96021 1.01305 1.00280 1.21686 0.94706 0.97372 1.01311 1.18985 0.94429 0.90241 0.79200 0.94915 1.21401 0.91190 1.44426 1.02116 0.92952 1.25523 1.02477 0.94375 0.94406 1.70010 1.37594 1.44005 1.02614 0.85664 0.80085 0.78634 0.77678 1.20297 1.20363 1.19209 1.44751 1.38851 1.21769 1.07455 1.21506 1.00797 1.00480 0.82760 1.20164 1.05851 0.97741 0.95253 1.19429 0.96272 0.98103 0.88258 1.22255 1.01209 0.96173 0.98221 1.22020 0.89253 1.02926 0.92522 1.60729 1.03787 1.04690 1.62379 1.21995 1.00915 0.91949 0.91751 1.22279 0.95437 1.01827 0.98607 1.19196 1.05331 0.98989 0.93389 1.18416 0.97222 0.90850 0.94363 1.20350 1.01462 0.97060 0.98029 1.20861 0.97323 0.95634 0.95566 1.21048 1.04779 1.02302 0.92260 1.17241 0.99733 0.95246 0.77787 1.91399 1.94383 1.92772 1.33784 0.91850 0.93923 0.94143 0.93432 0.91442 0.92100 0.82308 0.91409 0.92227 0.92163 0.91048 0.89405 0.83733 0.90997 0.89692 0.92725 0.92429 0.86545 0.81785 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.73 71.98 0.70 -4.31 16 2 C -0.11 -4.83 5.27 30.59 0.16 -4.67 16 3 C 0.27 12.79 2.17 44.24 0.10 12.89 16 4 H 0.03 1.72 7.27 -2.39 -0.02 1.71 16 5 C -0.55 -28.53 8.43 25.60 0.22 -28.32 16 6 H 0.05 2.77 7.66 -2.91 -0.02 2.74 16 7 C 0.03 1.76 5.16 84.65 0.44 2.20 16 8 N -0.91 -48.04 12.16 21.45 0.26 -47.78 16 9 Si 0.95 41.04 29.55 68.60 2.03 43.06 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 N -0.45 -19.20 2.17 -497.42 -1.08 -20.28 16 14 C 0.07 2.80 9.37 82.98 0.78 3.58 16 15 C -0.18 -6.51 5.06 -18.63 -0.09 -6.61 16 16 C 0.00 -0.04 2.65 -11.46 -0.03 -0.07 16 17 C -0.14 -3.39 5.27 30.65 0.16 -3.23 16 18 C 0.06 1.25 6.55 86.33 0.57 1.82 16 19 N -0.69 -13.86 6.87 -514.01 -3.53 -17.39 16 20 C 0.06 1.34 6.55 86.33 0.57 1.90 16 21 C -0.14 -3.68 5.26 30.65 0.16 -3.52 16 22 C -0.16 -6.18 6.33 -20.17 -0.13 -6.31 16 23 C 0.10 4.10 6.81 39.02 0.27 4.37 16 24 C -0.15 -5.33 9.80 22.37 0.22 -5.11 16 25 C -0.07 -2.11 10.01 22.29 0.22 -1.89 16 26 C -0.18 -5.19 10.01 22.32 0.22 -4.97 16 27 C 0.12 4.03 7.34 22.56 0.17 4.20 16 28 F -0.14 -4.70 16.02 44.97 0.72 -3.98 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.49 7.89 -2.39 -0.02 1.47 16 32 H 0.05 1.97 7.75 -2.39 -0.02 1.95 16 33 H 0.07 3.22 6.81 -2.39 -0.02 3.20 16 34 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.16 5.82 8.05 -2.90 -0.02 5.80 16 36 H 0.07 2.04 6.85 -2.39 -0.02 2.02 16 37 H 0.06 1.48 7.96 -2.39 -0.02 1.46 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.34 6.45 8.86 -89.69 -0.79 5.65 16 42 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 46 H 0.12 4.24 7.55 -2.91 -0.02 4.22 16 47 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 48 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -56.40 384.03 3.25 -53.15 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.16 Total: 31.26 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 4.69 Total: -38.04 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -4.35 Total: -85.45 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.72 Total: -3.98 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -56.40 3.25 -53.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.954 kcal (2) G-P(sol) polarization free energy of solvation -56.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds