Wall clock time and date at job start Tue Mar 31 2020 15:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 14 14 C 1.36797 * 125.07430 * 60.02720 * 13 3 2 15 15 C 1.34244 * 109.92296 * 179.97438 * 14 13 3 16 16 C 1.50703 * 126.49302 * 179.97438 * 15 14 13 17 17 C 1.53122 * 109.51900 * 59.90731 * 16 15 14 18 18 C 1.53044 * 109.27185 * 182.50064 * 17 16 15 19 19 N 1.46847 * 109.57772 * 59.08365 * 18 17 16 20 20 C 1.46849 * 111.19585 * 298.28907 * 19 18 17 21 21 C 1.53039 * 109.52463 * 61.74350 * 20 19 18 22 22 C 1.46481 * 107.01288 * 0.02562 * 15 14 13 23 23 C 1.39698 * 134.01305 * 180.02562 * 22 15 14 24 24 C 1.36614 * 119.80724 * 179.27409 * 23 22 15 25 25 C 1.38837 * 120.54338 * 0.54239 * 24 23 22 26 26 C 1.37932 * 120.63656 * 359.66024 * 25 24 23 27 27 F 1.35100 * 120.13149 * 179.97438 * 26 25 24 28 28 C 1.37774 * 125.07275 * 239.71799 * 13 3 2 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 33 33 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 34 34 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 35 35 H 1.08004 * 125.03529 * 359.97438 * 14 13 3 36 36 H 1.08999 * 109.51954 * 180.02562 * 16 15 14 37 37 H 1.08996 * 109.50027 * 302.37746 * 17 16 15 38 38 H 1.08999 * 109.50427 * 62.49679 * 17 16 15 39 39 H 1.08997 * 109.41446 * 299.06551 * 18 17 16 40 40 H 1.09001 * 109.46297 * 179.12820 * 18 17 16 41 41 H 1.00898 * 111.00055 * 62.38228 * 19 18 17 42 42 H 1.09002 * 109.46262 * 301.72232 * 20 19 18 43 43 H 1.09000 * 109.45996 * 181.75485 * 20 19 18 44 44 H 1.09000 * 109.50400 * 180.87965 * 21 20 19 45 45 H 1.08996 * 109.53780 * 60.77699 * 21 20 19 46 46 H 1.07998 * 120.09887 * 359.94639 * 23 22 15 47 47 H 1.07999 * 119.72495 * 180.20462 * 24 23 22 48 48 H 1.07995 * 119.68036 * 179.63141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0974 1.2518 14 6 2.0231 1.6849 2.5023 15 6 1.4994 2.5039 3.4282 16 6 1.6698 2.3938 4.9215 17 6 3.1565 2.4898 5.2752 18 6 3.3286 2.3150 6.7859 19 7 2.7917 1.0108 7.1946 20 6 1.3547 0.9148 6.9081 21 6 1.1237 1.0461 5.4009 22 6 0.7299 3.5240 2.7120 23 6 -0.0280 4.6271 3.1123 24 6 -0.6287 5.4155 2.1721 25 6 -0.5018 5.1234 0.8208 26 6 0.2382 4.0369 0.4030 27 9 0.3546 3.7618 -0.9146 28 6 0.8651 3.2242 1.3451 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8292 -0.0602 -2.9504 35 1 2.6449 0.8274 2.7134 36 1 1.1261 3.2021 5.4106 37 1 3.7058 1.7058 4.7541 38 1 3.5399 3.4649 4.9747 39 1 2.7913 3.1081 7.3059 40 1 4.3875 2.3674 7.0392 41 1 3.2991 0.2572 6.7555 42 1 0.8265 1.7144 7.4276 43 1 0.9798 -0.0499 7.2502 44 1 0.0557 0.9904 5.1902 45 1 1.6397 0.2388 4.8814 46 1 -0.1299 4.8623 4.1614 47 1 -1.2116 6.2699 2.4829 48 1 -0.9874 5.7526 0.0897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:51 Heat of formation + Delta-G solvation = -9.584655 kcal Electronic energy + Delta-G solvation = -29432.446352 eV Core-core repulsion = 25593.831748 eV Total energy + Delta-G solvation = -3838.614604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.25986 -40.86480 -38.59933 -36.82315 -34.71108 -32.84100 -31.69846 -30.77772 -30.10778 -29.05826 -28.15847 -26.58669 -23.92555 -23.12338 -22.78184 -22.24441 -21.56464 -20.70806 -19.96607 -18.72389 -17.02621 -16.50227 -16.25455 -15.72519 -15.44832 -15.15844 -14.72919 -14.64405 -14.63343 -14.32760 -14.16007 -13.90503 -13.67793 -13.26664 -13.08828 -12.74158 -12.48155 -12.29865 -12.18874 -12.09241 -11.71998 -11.61982 -11.44613 -11.21516 -11.18104 -11.15116 -10.98483 -10.81853 -10.76703 -10.48078 -10.33128 -10.25622 -10.09581 -9.97222 -9.33654 -8.78590 -8.64465 -8.38162 -7.70257 -6.88990 -6.29974 -4.41752 1.45658 2.00555 3.13852 3.19973 3.22424 3.26922 3.69766 4.19043 4.23107 4.30170 4.69705 4.85519 4.99458 5.08291 5.11085 5.16046 5.20928 5.27520 5.35064 5.44175 5.49667 5.58560 5.71474 5.77448 5.88820 5.89319 5.98758 6.05146 6.06149 6.07860 6.12009 6.18507 6.23888 6.28523 6.32029 6.42560 6.56181 6.64057 6.70553 6.77988 6.86786 6.95895 6.99563 7.09552 7.28189 7.33476 7.36786 7.47183 7.64185 7.80458 8.09072 8.10018 8.63860 9.25927 10.73552 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009064 B = 0.005173 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.271716 B = 5411.885414 C = 7170.431987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.253 3.747 4 H 0.067 0.933 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.431 5.431 14 C 0.100 3.900 15 C -0.206 4.206 16 C 0.004 3.996 17 C -0.149 4.149 18 C 0.056 3.944 19 N -0.689 5.689 20 C 0.056 3.944 21 C -0.148 4.148 22 C -0.083 4.083 23 C -0.088 4.088 24 C -0.134 4.134 25 C -0.156 4.156 26 C 0.100 3.900 27 F -0.138 7.138 28 C 0.064 3.936 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.268 0.732 35 H 0.157 0.843 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.340 0.660 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.116 0.884 47 H 0.121 0.879 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 3.432 12.895 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.154 3.846 4 H 0.085 0.915 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.520 5.520 9 Si 0.730 3.270 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.107 5.107 14 C -0.031 4.031 15 C -0.213 4.213 16 C -0.016 4.016 17 C -0.189 4.189 18 C -0.073 4.073 19 N -0.317 5.317 20 C -0.073 4.073 21 C -0.188 4.188 22 C -0.088 4.088 23 C -0.106 4.106 24 C -0.154 4.154 25 C -0.176 4.176 26 C 0.079 3.921 27 F -0.117 7.117 28 C -0.046 4.046 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.175 0.825 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.157 0.843 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.244 3.305 12.974 14.379 hybrid contribution 1.025 -0.183 -1.705 1.997 sum -4.219 3.122 11.269 12.431 Atomic orbital electron populations 1.21812 0.98504 0.99777 1.00451 1.21949 0.92546 0.98627 1.03476 1.19565 0.96010 0.90258 0.78782 0.91507 1.21265 0.89893 1.39515 1.06766 0.91764 1.24881 0.99028 0.94418 0.95062 1.69850 1.35458 1.37354 1.09360 0.86397 0.84306 0.78674 0.77583 1.20307 1.20823 1.19712 1.44962 1.37370 1.20283 1.08054 1.21440 0.99249 0.99361 0.83096 1.19837 1.08177 0.99422 0.93847 1.19270 0.95123 0.96875 0.90301 1.22352 0.96674 1.02883 0.96957 1.22036 1.00012 0.91668 0.93601 1.60711 1.03778 1.04719 1.62527 1.22037 0.89133 1.01973 0.94179 1.22343 1.01927 0.97708 0.96787 1.18872 1.01615 0.97466 0.90863 1.20122 0.97554 0.94031 0.98942 1.20228 1.02730 1.00707 0.91707 1.20623 1.02446 0.97419 0.97145 1.16809 1.02043 0.96882 0.76405 1.91479 1.94636 1.93356 1.32212 1.18281 0.99720 0.92248 0.94366 0.94143 0.94389 0.93506 0.87172 0.94146 0.92247 0.82550 0.91196 0.91842 0.91342 0.91175 0.91022 0.84298 0.91158 0.91058 0.91446 0.91933 0.86570 0.86087 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 37.16 0.36 -2.60 16 2 C -0.13 -2.88 5.23 -26.73 -0.14 -3.02 16 3 C 0.25 6.11 2.31 -69.08 -0.16 5.95 16 4 H 0.07 1.81 6.10 -51.93 -0.32 1.49 16 5 C -0.54 -13.98 8.48 -34.44 -0.29 -14.28 16 6 H 0.06 1.70 7.71 -52.49 -0.40 1.29 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -23.68 11.29 55.43 0.63 -23.06 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.43 -9.29 2.10 -108.53 -0.23 -9.51 16 14 C 0.10 1.88 9.42 -16.74 -0.16 1.72 16 15 C -0.21 -3.44 5.06 -102.71 -0.52 -3.96 16 16 C 0.00 0.05 2.65 -91.65 -0.24 -0.20 16 17 C -0.15 -1.81 5.27 -26.65 -0.14 -1.95 16 18 C 0.06 0.58 6.55 -3.83 -0.03 0.56 16 19 N -0.69 -7.12 6.87 -113.81 -0.78 -7.90 16 20 C 0.06 0.57 6.55 -3.83 -0.03 0.54 16 21 C -0.15 -1.72 5.27 -26.65 -0.14 -1.87 16 22 C -0.08 -1.49 6.35 -105.15 -0.67 -2.15 16 23 C -0.09 -1.33 10.05 -39.62 -0.40 -1.73 16 24 C -0.13 -1.93 9.97 -39.95 -0.40 -2.32 16 25 C -0.16 -2.53 9.99 -39.47 -0.39 -2.93 16 26 C 0.10 2.00 7.32 -39.29 -0.29 1.71 16 27 F -0.14 -3.02 15.37 2.25 0.03 -2.99 16 28 C 0.06 1.33 6.82 -83.91 -0.57 0.76 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.11 2.75 5.95 -51.93 -0.31 2.44 16 33 H 0.04 0.87 7.72 -51.93 -0.40 0.47 16 34 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.16 2.80 8.03 -52.48 -0.42 2.38 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.34 3.33 8.86 -39.29 -0.35 2.98 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.77 7.96 -51.93 -0.41 0.35 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 47 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -27.19 382.66 -11.53 -38.72 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.64 Total: 7.62 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -4.29 Total: -24.04 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.38 Total: -40.47 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.03 Total: -2.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.19 -11.53 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.135 kcal (2) G-P(sol) polarization free energy of solvation -27.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds