Wall clock time and date at job start Tue Mar 31 2020 15:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46498 * 109.46687 * 65.00113 * 3 2 1 14 14 C 1.36797 * 125.07430 * 60.02720 * 13 3 2 15 15 C 1.34244 * 109.92296 * 179.97438 * 14 13 3 16 16 C 1.50703 * 126.49302 * 179.97438 * 15 14 13 17 17 C 1.53122 * 109.51900 * 59.90731 * 16 15 14 18 18 C 1.53044 * 109.27185 * 182.50064 * 17 16 15 19 19 N 1.46847 * 109.57772 * 59.08365 * 18 17 16 20 20 C 1.46849 * 111.19585 * 298.28907 * 19 18 17 21 21 C 1.53039 * 109.52463 * 61.74350 * 20 19 18 22 22 C 1.46481 * 107.01288 * 0.02562 * 15 14 13 23 23 C 1.39698 * 134.01305 * 180.02562 * 22 15 14 24 24 C 1.36614 * 119.80724 * 179.27409 * 23 22 15 25 25 C 1.38837 * 120.54338 * 0.54239 * 24 23 22 26 26 C 1.37932 * 120.63656 * 359.66024 * 25 24 23 27 27 F 1.35100 * 120.13149 * 179.97438 * 26 25 24 28 28 C 1.37774 * 125.07275 * 239.71799 * 13 3 2 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 32 32 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 33 33 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 34 34 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 35 35 H 1.08004 * 125.03529 * 359.97438 * 14 13 3 36 36 H 1.08999 * 109.51954 * 180.02562 * 16 15 14 37 37 H 1.08996 * 109.50027 * 302.37746 * 17 16 15 38 38 H 1.08999 * 109.50427 * 62.49679 * 17 16 15 39 39 H 1.08997 * 109.41446 * 299.06551 * 18 17 16 40 40 H 1.09001 * 109.46297 * 179.12820 * 18 17 16 41 41 H 1.00898 * 111.00055 * 62.38228 * 19 18 17 42 42 H 1.09002 * 109.46262 * 301.72232 * 20 19 18 43 43 H 1.09000 * 109.45996 * 181.75485 * 20 19 18 44 44 H 1.09000 * 109.50400 * 180.87965 * 21 20 19 45 45 H 1.08996 * 109.53780 * 60.77699 * 21 20 19 46 46 H 1.07998 * 120.09887 * 359.94639 * 23 22 15 47 47 H 1.07999 * 119.72495 * 180.20462 * 24 23 22 48 48 H 1.07995 * 119.68036 * 179.63141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6524 2.0974 1.2518 14 6 2.0231 1.6849 2.5023 15 6 1.4994 2.5039 3.4282 16 6 1.6698 2.3938 4.9215 17 6 3.1565 2.4898 5.2752 18 6 3.3286 2.3150 6.7859 19 7 2.7917 1.0108 7.1946 20 6 1.3547 0.9148 6.9081 21 6 1.1237 1.0461 5.4009 22 6 0.7299 3.5240 2.7120 23 6 -0.0280 4.6271 3.1123 24 6 -0.6287 5.4155 2.1721 25 6 -0.5018 5.1234 0.8208 26 6 0.2382 4.0369 0.4030 27 9 0.3546 3.7618 -0.9146 28 6 0.8651 3.2242 1.3451 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8292 -0.0602 -2.9504 35 1 2.6449 0.8274 2.7134 36 1 1.1261 3.2021 5.4106 37 1 3.7058 1.7058 4.7541 38 1 3.5399 3.4649 4.9747 39 1 2.7913 3.1081 7.3059 40 1 4.3875 2.3674 7.0392 41 1 3.2991 0.2572 6.7555 42 1 0.8265 1.7144 7.4276 43 1 0.9798 -0.0499 7.2502 44 1 0.0557 0.9904 5.1902 45 1 1.6397 0.2388 4.8814 46 1 -0.1299 4.8623 4.1614 47 1 -1.2116 6.2699 2.4829 48 1 -0.9874 5.7526 0.0897 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180242.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:50 Heat of formation + Delta-G solvation = -21.953606 kcal Electronic energy + Delta-G solvation = -29432.982710 eV Core-core repulsion = 25593.831748 eV Total energy + Delta-G solvation = -3839.150962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.80964 -42.26979 -39.55386 -38.26783 -36.33206 -34.27496 -33.38087 -31.65814 -31.38707 -30.55632 -29.56927 -28.25338 -25.44942 -24.49505 -23.66356 -23.60267 -23.00673 -21.94082 -21.38432 -20.05822 -18.83067 -17.91367 -17.78902 -17.01788 -16.84101 -16.69712 -16.28128 -16.02788 -15.73732 -15.50628 -15.48555 -15.16781 -14.84879 -14.77077 -14.52285 -14.16107 -13.86962 -13.71498 -13.52211 -13.35802 -13.10108 -13.05740 -12.97625 -12.76713 -12.64052 -12.36967 -12.26876 -12.13965 -12.07461 -12.02815 -11.85452 -11.80289 -11.44539 -11.31247 -11.11358 -10.65268 -10.18502 -9.23493 -9.11048 -8.41718 -8.18398 -6.49243 0.09900 0.68917 1.32433 1.34002 1.43944 1.81428 2.15158 2.35077 2.88772 2.96802 3.39572 3.50776 3.71915 3.82074 3.97521 4.11822 4.14100 4.15193 4.24526 4.31847 4.33151 4.46228 4.47800 4.51996 4.55463 4.59701 4.64042 4.77621 4.85071 4.90238 4.96718 5.04303 5.05774 5.08160 5.10662 5.15399 5.20501 5.27403 5.33524 5.34376 5.35566 5.48768 5.57180 5.67627 5.69764 5.91563 5.93229 6.07679 6.18315 6.39637 6.51301 6.53854 6.69771 7.22218 8.72620 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009064 B = 0.005173 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.271716 B = 5411.885414 C = 7170.431987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 C 0.263 3.737 4 H 0.029 0.971 5 C -0.551 4.551 6 H 0.052 0.948 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 0.963 3.037 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.451 5.451 14 C 0.069 3.931 15 C -0.182 4.182 16 C 0.006 3.994 17 C -0.144 4.144 18 C 0.064 3.936 19 N -0.691 5.691 20 C 0.063 3.937 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.139 4.139 26 C 0.047 3.953 27 F -0.163 7.163 28 C 0.032 3.968 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.342 0.658 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.154 0.846 47 H 0.168 0.832 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 4.737 15.924 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.162 3.838 4 H 0.046 0.954 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.200 1.200 13 N -0.128 5.128 14 C -0.059 4.059 15 C -0.189 4.189 16 C -0.013 4.013 17 C -0.184 4.184 18 C -0.066 4.066 19 N -0.319 5.319 20 C -0.067 4.067 21 C -0.181 4.181 22 C -0.104 4.104 23 C -0.096 4.096 24 C -0.144 4.144 25 C -0.159 4.159 26 C 0.026 3.974 27 F -0.142 7.142 28 C -0.077 4.077 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.171 0.829 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.171 0.829 47 H 0.186 0.814 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.006 4.609 16.037 17.735 hybrid contribution 1.172 -0.460 -2.593 2.883 sum -4.834 4.149 13.444 14.877 Atomic orbital electron populations 1.21650 0.96550 1.01104 0.99739 1.21755 0.94214 0.97538 1.02203 1.19106 0.94682 0.90618 0.79357 0.95360 1.21461 0.91182 1.39593 1.06711 0.93003 1.25627 1.03111 0.94016 0.94676 1.69966 1.36996 1.37806 1.09704 0.85472 0.79368 0.78767 0.77593 1.19097 1.20339 1.20019 1.44704 1.39054 1.21333 1.07676 1.21576 1.00971 1.00590 0.82812 1.20258 1.05715 0.97568 0.95361 1.19380 0.96014 0.98236 0.87641 1.22298 0.95732 1.01863 0.98487 1.22005 1.00783 0.91963 0.91827 1.60746 1.04026 1.04803 1.62354 1.22030 0.89032 1.02998 0.92617 1.22278 1.01417 0.96343 0.98091 1.19292 1.02597 0.98815 0.89733 1.20604 0.95547 0.92306 1.01123 1.20765 1.01901 1.01428 0.90316 1.21082 1.00209 0.95646 0.98977 1.17410 1.05107 0.99259 0.75626 1.91406 1.95131 1.93809 1.33824 1.18774 1.00435 0.92443 0.96091 0.91625 0.94394 0.94804 0.89698 0.93835 0.92101 0.82852 0.89732 0.93312 0.92192 0.90217 0.90206 0.84060 0.90248 0.89943 0.91696 0.93122 0.82864 0.81420 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.80 71.98 0.71 -4.82 16 2 C -0.12 -5.64 5.23 30.60 0.16 -5.48 16 3 C 0.26 13.56 2.31 44.25 0.10 13.66 16 4 H 0.03 1.67 6.10 -2.39 -0.01 1.65 16 5 C -0.55 -30.35 8.48 25.60 0.22 -30.13 16 6 H 0.05 2.90 7.71 -2.91 -0.02 2.88 16 7 C 0.03 1.46 5.29 84.65 0.45 1.91 16 8 N -0.91 -50.74 11.29 21.45 0.24 -50.50 16 9 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.45 -20.44 2.10 -497.27 -1.04 -21.48 16 14 C 0.07 2.71 9.42 83.01 0.78 3.50 16 15 C -0.18 -6.01 5.06 -18.63 -0.09 -6.10 16 16 C 0.01 0.15 2.65 -11.46 -0.03 0.12 16 17 C -0.14 -3.31 5.27 30.65 0.16 -3.15 16 18 C 0.06 1.16 6.55 86.33 0.57 1.72 16 19 N -0.69 -12.56 6.87 -513.98 -3.53 -16.09 16 20 C 0.06 1.08 6.55 86.33 0.57 1.65 16 21 C -0.14 -3.05 5.27 30.65 0.16 -2.89 16 22 C -0.10 -3.46 6.35 -20.20 -0.13 -3.59 16 23 C -0.08 -2.08 10.05 22.24 0.22 -1.86 16 24 C -0.13 -3.09 9.97 22.03 0.22 -2.87 16 25 C -0.14 -4.30 9.99 22.34 0.22 -4.08 16 26 C 0.05 1.95 7.32 22.46 0.16 2.11 16 27 F -0.16 -7.63 15.37 44.97 0.69 -6.94 16 28 C 0.03 1.36 6.82 39.04 0.27 1.63 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 31 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 4.48 5.95 -2.39 -0.01 4.46 16 33 H 0.04 1.98 7.72 -2.39 -0.02 1.96 16 34 H 0.27 14.24 8.31 -92.70 -0.77 13.47 16 35 H 0.15 5.85 8.03 -2.91 -0.02 5.82 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.34 6.08 8.86 -89.70 -0.79 5.28 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 46 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 48 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -63.12 382.66 3.26 -59.86 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.16 Total: 28.83 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 4.71 Total: -38.67 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -4.33 Total: -88.08 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.69 Total: -6.94 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.12 3.26 -59.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180242.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.904 kcal (2) G-P(sol) polarization free energy of solvation -63.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds