Wall clock time and date at job start Tue Mar 31 2020 15:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08998 * 109.47236 * 54.99467 * 3 2 1 5 5 C 1.53004 * 109.46886 * 294.99624 * 3 2 1 6 6 C 1.52999 * 109.46710 * 175.00020 * 3 2 1 7 7 N 1.46904 * 109.46554 * 181.01086 * 6 3 2 8 8 C 1.47145 * 110.99618 * 176.80663 * 7 6 3 9 9 C 1.53852 * 106.75402 * 219.04086 * 8 7 6 10 10 F 1.39899 * 112.67245 * 150.76927 * 9 8 7 11 11 C 1.51100 * 109.69839 * 277.14496 * 9 8 7 12 12 O 1.21280 * 124.86966 * 307.37326 * 11 9 8 13 13 N 1.34374 * 110.25899 * 127.34082 * 11 9 8 14 14 C 1.46505 * 124.33432 * 180.34390 * 13 11 9 15 15 C 1.52998 * 109.46802 * 90.02362 * 14 13 11 16 16 C 1.50696 * 109.46897 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99825 * 179.72858 * 16 15 14 19 19 N 1.31509 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47043 * 89.99668 * 20 18 16 22 22 H 1.48499 * 109.46999 * 209.99584 * 20 18 16 23 23 H 1.48492 * 109.47055 * 329.99815 * 20 18 16 24 24 C 1.46718 * 111.32763 * 0.61200 * 13 11 9 25 25 C 1.54600 * 105.53103 * 342.46340 * 24 13 11 26 26 F 1.39901 * 113.99049 * 148.38315 * 25 24 13 27 27 C 1.47028 * 111.00218 * 55.13544 * 7 6 3 28 28 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47834 * 300.00196 * 1 2 3 30 30 H 1.09008 * 109.47280 * 60.00400 * 1 2 3 31 31 H 1.08993 * 109.47109 * 239.99791 * 2 1 3 32 32 H 1.08996 * 109.46703 * 119.99308 * 2 1 3 33 33 H 1.08999 * 109.47052 * 306.02150 * 5 3 2 34 34 H 1.09002 * 109.47216 * 66.02032 * 5 3 2 35 35 H 1.08996 * 109.46987 * 186.02067 * 5 3 2 36 36 H 1.08995 * 109.47403 * 61.01101 * 6 3 2 37 37 H 1.08997 * 109.46785 * 301.00254 * 6 3 2 38 38 H 1.08999 * 110.00513 * 99.72044 * 8 7 6 39 39 H 1.08998 * 110.00288 * 338.36194 * 8 7 6 40 40 H 1.08993 * 109.46939 * 330.02434 * 14 13 11 41 41 H 1.08999 * 109.47160 * 210.02526 * 14 13 11 42 42 H 1.09006 * 109.47058 * 60.00091 * 15 14 13 43 43 H 1.08999 * 109.47397 * 300.00019 * 15 14 13 44 44 H 0.97000 * 120.00319 * 180.02562 * 19 18 16 45 45 H 1.08994 * 110.21822 * 101.60999 * 24 13 11 46 46 H 1.08994 * 110.21628 * 223.54097 * 24 13 11 47 47 H 1.08999 * 109.75718 * 243.26342 * 27 7 6 48 48 H 1.09001 * 109.75849 * 3.95744 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 7 4.0524 2.8299 0.1501 8 6 5.5100 2.8725 0.3466 9 6 5.7964 4.0563 1.2866 10 9 6.9430 3.8623 2.0642 11 6 5.8435 5.3394 0.4899 12 8 6.5289 5.5197 -0.4942 13 7 5.0165 6.2517 1.0279 14 6 4.8175 7.6021 0.4959 15 6 3.6725 7.5869 -0.5188 16 6 3.4682 8.9758 -1.0665 17 1 4.0923 9.7882 -0.7248 18 6 2.4878 9.2084 -2.0078 19 7 1.7314 8.2181 -2.4279 20 14 2.2342 10.9303 -2.6862 21 1 3.0852 11.1190 -3.8884 22 1 0.8075 11.1113 -3.0563 23 1 2.6082 11.9294 -1.6533 24 6 4.3431 5.7243 2.2200 25 6 4.5019 4.1885 2.1397 26 9 4.5850 3.5594 3.3865 27 6 3.3974 3.6003 1.2174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 1.9792 1.5290 -2.1517 34 1 0.5500 2.2209 -1.3473 35 1 2.0881 3.1168 -1.3547 36 1 4.0002 0.9208 -0.7254 37 1 3.8538 0.9413 1.0484 38 1 6.0108 3.0259 -0.6093 39 1 5.8521 1.9433 0.8023 40 1 5.7318 7.9383 0.0070 41 1 4.5709 8.2814 1.3119 42 1 2.7581 7.2506 -0.0298 43 1 3.9191 6.9076 -1.3348 44 1 1.0419 8.3816 -3.0903 45 1 4.8191 6.1080 3.1223 46 1 3.2871 5.9941 2.2064 47 1 2.8129 4.4105 0.7814 48 1 2.7456 2.9466 1.7969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272419804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:03 Heat of formation + Delta-G solvation = -125.033446 kcal Electronic energy + Delta-G solvation = -30536.336470 eV Core-core repulsion = 26261.946406 eV Total energy + Delta-G solvation = -4274.390064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.51055 -47.51447 -40.65967 -38.56218 -36.45692 -35.73681 -33.55780 -31.93326 -30.38450 -29.48019 -28.72239 -26.73771 -25.95215 -25.05876 -23.50279 -22.01613 -21.54023 -21.06236 -19.77569 -19.46302 -17.65270 -16.83075 -16.54781 -16.25135 -15.89591 -15.66187 -15.37248 -15.14870 -14.92514 -14.68747 -14.54539 -14.20089 -14.15499 -13.92658 -13.79307 -13.36057 -13.15241 -12.97312 -12.84224 -12.70753 -12.42683 -12.24376 -12.21044 -11.94830 -11.86485 -11.48169 -11.45107 -11.25734 -10.99541 -10.83773 -10.74912 -10.67598 -10.64036 -10.53936 -10.09098 -9.96515 -9.56038 -9.23237 -8.57268 -8.41508 -8.32022 -6.06541 -4.10485 2.55364 2.96932 3.29628 3.31664 3.36189 3.38684 3.52113 3.58075 3.71702 4.09595 4.32057 4.41545 4.50151 4.64346 4.73454 4.86661 5.00906 5.05180 5.17634 5.28334 5.29945 5.36127 5.37894 5.39602 5.56552 5.58341 5.60556 5.63720 5.66573 5.80200 5.83848 5.85616 5.94722 6.00598 6.12445 6.27776 6.31611 6.53026 6.61497 6.65449 6.68543 6.74009 7.17469 7.56852 7.71293 7.90747 8.18803 8.32081 8.95292 9.54038 11.04476 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.004288 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.007763 B = 6528.474921 C = 8487.413363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.094 4.094 4 H 0.072 0.928 5 C -0.144 4.144 6 C 0.054 3.946 7 N -0.510 5.510 8 C 0.040 3.960 9 C 0.058 3.942 10 F -0.164 7.164 11 C 0.520 3.480 12 O -0.496 6.496 13 N -0.594 5.594 14 C 0.127 3.873 15 C 0.013 3.987 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.093 3.907 25 C 0.064 3.936 26 F -0.169 7.169 27 C 0.032 3.968 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.115 0.885 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -15.803 9.800 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.112 4.112 4 H 0.090 0.910 5 C -0.201 4.201 6 C -0.074 4.074 7 N -0.233 5.233 8 C -0.088 4.088 9 C 0.035 3.965 10 F -0.144 7.144 11 C 0.302 3.698 12 O -0.370 6.370 13 N -0.328 5.328 14 C 0.009 3.991 15 C -0.025 4.025 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.031 4.031 25 C 0.044 3.956 26 F -0.149 7.149 27 C -0.096 4.096 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.133 0.867 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.417 -15.450 8.680 17.726 hybrid contribution 0.097 0.413 0.685 0.805 sum 0.514 -15.037 9.364 17.722 Atomic orbital electron populations 1.21795 0.95634 1.01353 1.02231 1.21538 0.96200 0.96037 1.01783 1.21318 0.93639 0.96337 0.99954 0.90957 1.21802 1.00747 1.02005 0.95531 1.22474 0.95947 0.87930 1.01017 1.63271 1.02894 1.13205 1.43918 1.23101 0.89940 0.95414 1.00382 1.22739 0.83386 0.98778 0.91613 1.92916 1.50295 1.96054 1.75143 1.19973 0.80756 0.84447 0.84641 1.90750 1.41908 1.79726 1.24583 1.48399 1.42044 1.15329 1.26986 1.22011 1.02056 0.77169 0.97911 1.19415 0.91790 0.97856 0.93442 1.21039 1.17575 0.94022 1.23780 0.92462 1.24969 0.95765 0.97022 0.96254 1.69961 1.20933 1.31104 1.30765 0.86570 0.77323 0.84529 0.79449 1.20562 1.21191 1.19819 1.22450 1.01169 0.89426 0.90082 1.23279 0.96428 0.94575 0.81364 1.92900 1.96895 1.83049 1.42058 1.23719 0.94975 1.00031 0.90871 0.93023 0.92816 0.92163 0.91861 0.92354 0.93066 0.93013 0.90647 0.89904 0.94432 0.87030 0.91036 0.90456 0.90925 0.96321 0.95645 0.92884 0.89527 0.87622 0.86711 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -0.96 5.40 -26.73 -0.14 -1.11 16 3 C -0.09 -0.92 2.09 -90.62 -0.19 -1.10 16 4 H 0.07 0.71 6.19 -51.93 -0.32 0.39 16 5 C -0.14 -1.66 8.73 37.16 0.32 -1.34 16 6 C 0.05 0.55 4.17 -3.82 -0.02 0.54 16 7 N -0.51 -6.57 4.40 -232.14 -1.02 -7.59 16 8 C 0.04 0.54 6.05 -3.25 -0.02 0.52 16 9 C 0.06 0.89 1.74 -89.75 -0.16 0.73 16 10 F -0.16 -2.59 16.99 2.25 0.04 -2.55 16 11 C 0.52 9.70 7.01 -10.97 -0.08 9.63 16 12 O -0.50 -11.04 17.19 5.56 0.10 -10.94 16 13 N -0.59 -10.40 2.93 -172.47 -0.50 -10.91 16 14 C 0.13 2.54 5.87 -4.04 -0.02 2.51 16 15 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 16 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.09 1.26 6.51 -3.08 -0.02 1.24 16 25 C 0.06 0.85 1.98 -87.09 -0.17 0.68 16 26 F -0.17 -2.21 17.11 2.25 0.04 -2.17 16 27 C 0.03 0.40 5.53 -2.45 -0.01 0.38 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 6.70 -51.92 -0.35 0.16 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.57 6.87 -51.93 -0.36 0.22 16 35 H 0.07 1.08 7.46 -51.93 -0.39 0.70 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.36 8.02 -51.93 -0.42 -0.06 16 38 H 0.11 1.63 7.67 -51.93 -0.40 1.23 16 39 H 0.07 0.82 7.63 -51.93 -0.40 0.43 16 40 H 0.08 1.63 7.92 -51.93 -0.41 1.22 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.11 1.29 7.75 -51.93 -0.40 0.89 16 47 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 48 H 0.08 0.89 5.98 -51.93 -0.31 0.58 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -31.06 384.51 -8.46 -39.52 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.91 Total: -1.09 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.71 Total: -0.98 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.79 Total: -43.70 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.10 Total: -10.94 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.72 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.06 -8.46 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272419804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.518 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds