Wall clock time and date at job start Tue Mar 31 2020 15:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46906 * 2 1 4 4 H 1.08998 * 109.47236 * 54.99467 * 3 2 1 5 5 C 1.53004 * 109.46886 * 294.99624 * 3 2 1 6 6 C 1.52999 * 109.46710 * 175.00020 * 3 2 1 7 7 N 1.46904 * 109.46554 * 181.01086 * 6 3 2 8 8 C 1.47145 * 110.99618 * 176.80663 * 7 6 3 9 9 C 1.53852 * 106.75402 * 219.04086 * 8 7 6 10 10 F 1.39899 * 112.67245 * 150.76927 * 9 8 7 11 11 C 1.51100 * 109.69839 * 277.14496 * 9 8 7 12 12 O 1.21280 * 124.86966 * 307.37326 * 11 9 8 13 13 N 1.34374 * 110.25899 * 127.34082 * 11 9 8 14 14 C 1.46505 * 124.33432 * 180.34390 * 13 11 9 15 15 C 1.52998 * 109.46802 * 90.02362 * 14 13 11 16 16 C 1.50696 * 109.46897 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00269 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99825 * 179.72858 * 16 15 14 19 19 N 1.31509 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47043 * 89.99668 * 20 18 16 22 22 H 1.48499 * 109.46999 * 209.99584 * 20 18 16 23 23 H 1.48492 * 109.47055 * 329.99815 * 20 18 16 24 24 C 1.46718 * 111.32763 * 0.61200 * 13 11 9 25 25 C 1.54600 * 105.53103 * 342.46340 * 24 13 11 26 26 F 1.39901 * 113.99049 * 148.38315 * 25 24 13 27 27 C 1.47028 * 111.00218 * 55.13544 * 7 6 3 28 28 H 1.08999 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47834 * 300.00196 * 1 2 3 30 30 H 1.09008 * 109.47280 * 60.00400 * 1 2 3 31 31 H 1.08993 * 109.47109 * 239.99791 * 2 1 3 32 32 H 1.08996 * 109.46703 * 119.99308 * 2 1 3 33 33 H 1.08999 * 109.47052 * 306.02150 * 5 3 2 34 34 H 1.09002 * 109.47216 * 66.02032 * 5 3 2 35 35 H 1.08996 * 109.46987 * 186.02067 * 5 3 2 36 36 H 1.08995 * 109.47403 * 61.01101 * 6 3 2 37 37 H 1.08997 * 109.46785 * 301.00254 * 6 3 2 38 38 H 1.08999 * 110.00513 * 99.72044 * 8 7 6 39 39 H 1.08998 * 110.00288 * 338.36194 * 8 7 6 40 40 H 1.08993 * 109.46939 * 330.02434 * 14 13 11 41 41 H 1.08999 * 109.47160 * 210.02526 * 14 13 11 42 42 H 1.09006 * 109.47058 * 60.00091 * 15 14 13 43 43 H 1.08999 * 109.47397 * 300.00019 * 15 14 13 44 44 H 0.97000 * 120.00319 * 180.02562 * 19 18 16 45 45 H 1.08994 * 110.21822 * 101.60999 * 24 13 11 46 46 H 1.08994 * 110.21628 * 223.54097 * 24 13 11 47 47 H 1.08999 * 109.75718 * 243.26342 * 27 7 6 48 48 H 1.09001 * 109.75849 * 3.95744 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 7 4.0524 2.8299 0.1501 8 6 5.5100 2.8725 0.3466 9 6 5.7964 4.0563 1.2866 10 9 6.9430 3.8623 2.0642 11 6 5.8435 5.3394 0.4899 12 8 6.5289 5.5197 -0.4942 13 7 5.0165 6.2517 1.0279 14 6 4.8175 7.6021 0.4959 15 6 3.6725 7.5869 -0.5188 16 6 3.4682 8.9758 -1.0665 17 1 4.0923 9.7882 -0.7248 18 6 2.4878 9.2084 -2.0078 19 7 1.7314 8.2181 -2.4279 20 14 2.2342 10.9303 -2.6862 21 1 3.0852 11.1190 -3.8884 22 1 0.8075 11.1113 -3.0563 23 1 2.6082 11.9294 -1.6533 24 6 4.3431 5.7243 2.2200 25 6 4.5019 4.1885 2.1397 26 9 4.5850 3.5594 3.3865 27 6 3.3974 3.6003 1.2174 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 1.9792 1.5290 -2.1517 34 1 0.5500 2.2209 -1.3473 35 1 2.0881 3.1168 -1.3547 36 1 4.0002 0.9208 -0.7254 37 1 3.8538 0.9413 1.0484 38 1 6.0108 3.0259 -0.6093 39 1 5.8521 1.9433 0.8023 40 1 5.7318 7.9383 0.0070 41 1 4.5709 8.2814 1.3119 42 1 2.7581 7.2506 -0.0298 43 1 3.9191 6.9076 -1.3348 44 1 1.0419 8.3816 -3.0903 45 1 4.8191 6.1080 3.1223 46 1 3.2871 5.9941 2.2064 47 1 2.8129 4.4105 0.7814 48 1 2.7456 2.9466 1.7969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272419804.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:02 Heat of formation + Delta-G solvation = -143.353109 kcal Electronic energy + Delta-G solvation = -30537.130870 eV Core-core repulsion = 26261.946406 eV Total energy + Delta-G solvation = -4275.184464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.67824 -48.66247 -41.94884 -39.66967 -37.81176 -36.84923 -35.41700 -33.44548 -31.55102 -30.78711 -29.85607 -27.88303 -27.18452 -26.59875 -24.58852 -23.48585 -22.53143 -22.43600 -21.04602 -20.48819 -18.84272 -18.69015 -17.92161 -17.59481 -17.07033 -16.72534 -16.62853 -16.48873 -16.26556 -15.98573 -15.61599 -15.46968 -15.30907 -15.11556 -14.93367 -14.63233 -14.37350 -14.20520 -14.16014 -14.04173 -13.77942 -13.53101 -13.36628 -13.08664 -12.87050 -12.81774 -12.78590 -12.68570 -12.28068 -12.19456 -12.08071 -11.87843 -11.81259 -11.47055 -11.42380 -11.41042 -11.35525 -10.93378 -10.56294 -9.87144 -9.52206 -8.20163 -6.32071 1.09175 1.41793 1.43477 1.53367 1.60129 2.15993 2.38372 2.42923 2.50313 2.58446 2.95836 3.14213 3.19547 3.41464 3.81774 3.89603 3.97021 4.08614 4.16701 4.20767 4.24369 4.33955 4.44536 4.49003 4.51494 4.60724 4.63432 4.66709 4.69260 4.77516 4.84309 4.86055 4.89930 5.11711 5.16688 5.20663 5.23307 5.33106 5.42464 5.50929 5.52343 5.57679 5.68340 5.81088 5.84021 5.90807 6.16591 6.73481 6.85079 7.37448 8.91358 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.004288 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.007763 B = 6528.474921 C = 8487.413363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.140 4.140 6 C 0.055 3.945 7 N -0.530 5.530 8 C 0.044 3.956 9 C 0.060 3.940 10 F -0.166 7.166 11 C 0.508 3.492 12 O -0.545 6.545 13 N -0.596 5.596 14 C 0.141 3.859 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.963 3.037 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.258 1.258 24 C 0.087 3.913 25 C 0.081 3.919 26 F -0.161 7.161 27 C 0.037 3.963 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.009 0.991 43 H -0.022 1.022 44 H 0.263 0.737 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 -16.307 11.773 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.197 4.197 6 C -0.072 4.072 7 N -0.254 5.254 8 C -0.084 4.084 9 C 0.037 3.963 10 F -0.146 7.146 11 C 0.292 3.708 12 O -0.422 6.422 13 N -0.328 5.328 14 C 0.021 3.979 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.085 0.915 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.788 3.212 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.182 1.182 24 C -0.036 4.036 25 C 0.060 3.940 26 F -0.141 7.141 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.027 0.973 43 H -0.003 1.003 44 H 0.072 0.928 45 H 0.131 0.869 46 H 0.139 0.861 47 H 0.113 0.887 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.169 -15.966 10.699 19.220 hybrid contribution 0.270 0.543 0.049 0.608 sum 0.102 -15.424 10.748 18.799 Atomic orbital electron populations 1.21801 0.95517 1.01949 1.01827 1.21497 0.96234 0.94666 1.02603 1.21283 0.93416 0.97377 0.98594 0.90793 1.21737 1.00558 1.00333 0.97071 1.22544 0.96049 0.86505 1.02090 1.63195 1.02564 1.15073 1.44582 1.23040 0.90385 0.95701 0.99276 1.22688 0.84193 0.97363 0.92103 1.92911 1.50668 1.95929 1.75069 1.20647 0.80108 0.85757 0.84324 1.90709 1.43864 1.80887 1.26742 1.48393 1.41963 1.14475 1.27926 1.21627 0.99293 0.79221 0.97744 1.19190 0.93073 0.95875 0.93065 1.21509 1.17593 0.95203 1.24025 0.91547 1.25894 0.95491 1.01223 0.96595 1.70097 1.21628 1.33444 1.31465 0.85477 0.77278 0.79655 0.78821 1.20504 1.20681 1.18194 1.22769 1.02014 0.89687 0.89117 1.23101 0.95110 0.94406 0.81372 1.92924 1.96791 1.82861 1.41484 1.23647 0.94808 0.99952 0.90701 0.91948 0.92732 0.93090 0.91605 0.90948 0.92947 0.92859 0.94075 0.89572 0.92551 0.88974 0.88409 0.92008 0.87882 0.97308 1.00330 0.92789 0.86855 0.86092 0.88676 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 71.98 0.70 -1.47 16 2 C -0.11 -1.58 5.40 30.60 0.17 -1.41 16 3 C -0.09 -1.59 2.09 -10.79 -0.02 -1.62 16 4 H 0.07 1.32 6.19 -2.39 -0.01 1.31 16 5 C -0.14 -3.28 8.73 71.98 0.63 -2.65 16 6 C 0.05 1.03 4.17 86.30 0.36 1.39 16 7 N -0.53 -13.41 4.40 -888.36 -3.91 -17.31 16 8 C 0.04 1.18 6.05 86.54 0.52 1.70 16 9 C 0.06 1.79 1.74 -10.23 -0.02 1.77 16 10 F -0.17 -5.03 16.99 44.97 0.76 -4.26 16 11 C 0.51 19.41 7.01 87.85 0.62 20.03 16 12 O -0.54 -25.52 17.19 -3.03 -0.05 -25.58 16 13 N -0.60 -20.89 2.93 -818.19 -2.40 -23.28 16 14 C 0.14 5.68 5.87 86.38 0.51 6.19 16 15 C 0.03 1.33 5.30 29.85 0.16 1.48 16 16 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 17 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 20 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 C 0.09 2.20 6.51 86.88 0.57 2.76 16 25 C 0.08 1.98 1.98 -8.51 -0.02 1.97 16 26 F -0.16 -3.68 17.11 44.97 0.77 -2.91 16 27 C 0.04 0.87 5.53 87.12 0.48 1.35 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.80 6.70 -2.38 -0.02 0.79 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.20 6.87 -2.39 -0.02 1.18 16 35 H 0.04 1.24 7.46 -2.39 -0.02 1.22 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 0.88 8.02 -2.39 -0.02 0.86 16 38 H 0.09 2.80 7.67 -2.39 -0.02 2.78 16 39 H 0.10 2.05 7.63 -2.39 -0.02 2.03 16 40 H 0.06 2.67 7.92 -2.39 -0.02 2.66 16 41 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 43 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.12 2.73 7.75 -2.39 -0.02 2.71 16 47 H 0.10 2.66 7.47 -2.39 -0.02 2.64 16 48 H 0.11 2.03 5.98 -2.39 -0.01 2.01 16 Total: -1.00 -69.40 384.51 3.77 -65.62 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.94 Total: 14.83 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.34 Total: 2.55 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -6.02 Total: -95.71 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 9 Polarization: -8.71 SS G_CDS: 1.53 Total: -7.18 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.40 3.77 -65.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272419804.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.730 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds