Wall clock time and date at job start Tue Mar 31 2020 15:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.09001 * 109.47010 * 304.99681 * 3 2 1 5 5 C 1.52991 * 109.47343 * 65.00108 * 3 2 1 6 6 C 1.53004 * 109.46910 * 184.99920 * 3 2 1 7 7 N 1.46900 * 109.46913 * 175.00117 * 6 3 2 8 8 C 1.47148 * 111.00096 * 290.11999 * 7 6 3 9 9 C 1.53840 * 106.76140 * 219.04323 * 8 7 6 10 10 F 1.39896 * 112.67323 * 150.76471 * 9 8 7 11 11 C 1.51094 * 109.70029 * 277.14861 * 9 8 7 12 12 O 1.21277 * 124.86507 * 307.36593 * 11 9 8 13 13 N 1.34376 * 110.26255 * 127.33944 * 11 9 8 14 14 C 1.46496 * 124.33412 * 180.34702 * 13 11 9 15 15 C 1.52998 * 109.47238 * 90.02253 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.46717 * 111.32641 * 0.60810 * 13 11 9 25 25 C 1.54607 * 105.53022 * 342.46555 * 24 13 11 26 26 F 1.39898 * 113.98678 * 148.38073 * 25 24 13 27 27 C 1.47032 * 110.99921 * 168.45810 * 7 6 3 28 28 H 1.08993 * 109.46862 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 300.00006 * 1 2 3 30 30 H 1.09004 * 109.46628 * 60.00158 * 1 2 3 31 31 H 1.08997 * 109.47449 * 239.99994 * 2 1 3 32 32 H 1.08997 * 109.47056 * 119.99335 * 2 1 3 33 33 H 1.09002 * 109.47707 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47284 * 299.99734 * 5 3 2 35 35 H 1.09001 * 109.47417 * 59.99822 * 5 3 2 36 36 H 1.09003 * 109.47357 * 54.99753 * 6 3 2 37 37 H 1.09002 * 109.47363 * 294.99737 * 6 3 2 38 38 H 1.09004 * 110.00060 * 99.71295 * 8 7 6 39 39 H 1.09002 * 110.03621 * 338.39219 * 8 7 6 40 40 H 1.09000 * 109.47435 * 330.02157 * 14 13 11 41 41 H 1.09002 * 109.46784 * 210.01792 * 14 13 11 42 42 H 1.09001 * 109.47671 * 59.99927 * 15 14 13 43 43 H 1.08998 * 109.47454 * 299.99925 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.21762 * 101.61218 * 24 13 11 46 46 H 1.08996 * 110.21777 * 223.54218 * 24 13 11 47 47 H 1.09011 * 109.75320 * 243.26379 * 27 7 6 48 48 H 1.09005 * 109.75667 * 3.95242 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 7 4.0445 2.8276 -0.2461 8 6 3.6660 3.4059 -1.5452 9 6 4.8593 4.2541 -2.0178 10 9 4.9529 4.3237 -3.4119 11 6 4.8037 5.6175 -1.3691 12 8 3.8409 6.3549 -1.3866 13 7 5.9737 5.8957 -0.7696 14 6 6.2544 7.1349 -0.0404 15 6 5.8734 6.9584 1.4309 16 6 6.1627 8.2330 2.1812 17 1 6.5773 9.0836 1.6607 18 6 5.8934 8.3148 3.5309 19 7 6.1455 9.4272 4.1855 20 14 5.1692 6.8459 4.4294 21 1 6.2679 5.9950 4.9531 22 1 4.3299 7.3209 5.5587 23 1 4.3342 6.0540 3.4909 24 6 6.9360 4.8021 -0.9442 25 6 6.0953 3.5736 -1.3616 26 9 6.7656 2.6882 -2.2123 27 6 5.5055 2.8938 -0.0942 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.9989 3.1541 1.3075 34 1 0.5489 2.1253 1.3969 35 1 2.0698 1.5876 2.1491 36 1 3.8571 0.8800 -1.0113 37 1 4.0030 0.9837 0.7597 38 1 2.7835 4.0352 -1.4303 39 1 3.4658 2.6110 -2.2637 40 1 5.6725 7.9498 -0.4711 41 1 7.3166 7.3678 -0.1152 42 1 6.4553 6.1436 1.8617 43 1 4.8113 6.7254 1.5058 44 1 5.9556 9.4848 5.1350 45 1 7.6539 5.0532 -1.7249 46 1 7.4533 4.6022 -0.0059 47 1 5.7579 3.4809 0.7889 48 1 5.9116 1.8870 0.0045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272419805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:06 Heat of formation + Delta-G solvation = -124.049715 kcal Electronic energy + Delta-G solvation = -30532.770709 eV Core-core repulsion = 26258.423303 eV Total energy + Delta-G solvation = -4274.347406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.60912 -47.61164 -40.76934 -38.59695 -36.64580 -35.86013 -33.60074 -32.04183 -30.46130 -29.85396 -29.07616 -26.82581 -26.03572 -25.24071 -23.61011 -21.95973 -21.46805 -21.06493 -20.01856 -19.58816 -17.67152 -17.13788 -16.72116 -16.41530 -16.02382 -15.82380 -15.38517 -15.30168 -15.01483 -14.94383 -14.46568 -14.15143 -14.13089 -14.04052 -13.84853 -13.56458 -13.36857 -13.16084 -13.00712 -12.79784 -12.65528 -12.47985 -12.33397 -12.05401 -11.97203 -11.74435 -11.54095 -11.49818 -11.09646 -10.91296 -10.80897 -10.75140 -10.72159 -10.54676 -10.14047 -9.95547 -9.61052 -9.31827 -8.72904 -8.60952 -8.50113 -6.11249 -4.11384 2.42832 2.84604 3.19027 3.26231 3.35785 3.39547 3.41681 3.45821 3.60863 3.95334 4.19364 4.40255 4.40667 4.53109 4.65335 4.77377 4.90858 4.93290 5.07645 5.17589 5.22699 5.23601 5.27351 5.31012 5.41631 5.42977 5.47915 5.53301 5.55996 5.65581 5.72104 5.76094 5.83571 5.87410 5.99285 6.15329 6.16993 6.35898 6.41156 6.48235 6.51175 6.60445 6.93059 7.18549 7.34989 7.66529 8.10588 8.41536 8.90964 9.50014 11.01592 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.004565 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.172029 B = 6132.635427 C = 7891.143885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.143 4.143 6 C 0.054 3.946 7 N -0.513 5.513 8 C 0.040 3.960 9 C 0.058 3.942 10 F -0.162 7.162 11 C 0.519 3.481 12 O -0.493 6.493 13 N -0.598 5.598 14 C 0.136 3.864 15 C -0.024 4.024 16 C -0.524 4.524 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.262 1.262 24 C 0.092 3.908 25 C 0.065 3.935 26 F -0.167 7.167 27 C 0.034 3.966 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.014 0.986 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 -20.701 -10.509 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.200 4.200 6 C -0.074 4.074 7 N -0.237 5.237 8 C -0.088 4.088 9 C 0.035 3.965 10 F -0.142 7.142 11 C 0.301 3.699 12 O -0.367 6.367 13 N -0.332 5.332 14 C 0.018 3.982 15 C -0.062 4.062 16 C -0.562 4.562 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.032 4.032 25 C 0.044 3.956 26 F -0.147 7.147 27 C -0.094 4.094 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.124 0.876 47 H 0.131 0.869 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.320 -19.859 -9.941 22.624 hybrid contribution 0.259 -1.287 -0.308 1.348 sum -4.062 -21.146 -10.249 23.847 Atomic orbital electron populations 1.21800 0.95649 1.01402 1.02165 1.21548 0.96210 0.96113 1.01810 1.21175 0.93743 0.96076 0.99765 0.91048 1.21787 1.00512 1.01882 0.95800 1.22539 0.96253 0.87330 1.01244 1.63201 1.10303 1.19965 1.30195 1.23141 0.97072 0.98117 0.90501 1.22734 0.97716 0.98129 0.77934 1.92925 1.96911 1.97273 1.27130 1.20010 0.83710 0.86525 0.79646 1.90761 1.34060 1.52261 1.59585 1.48432 1.12347 1.19222 1.53156 1.21788 1.01342 0.81747 0.93362 1.19904 0.97327 0.98078 0.90869 1.20913 1.43384 0.98128 0.93814 0.90750 1.24958 0.94783 0.95803 0.97478 1.69897 1.48288 1.26234 1.09319 0.86809 0.79769 0.83353 0.79661 1.20300 1.21272 1.18617 1.22474 0.92097 0.84466 1.04179 1.23238 0.92135 0.89664 0.90529 1.92909 1.81224 1.69076 1.71528 1.23628 0.87727 1.02203 0.95830 0.92961 0.92245 0.92786 0.92274 0.91901 0.91148 0.93010 0.93091 0.94128 0.89992 0.87087 0.90873 0.89813 0.90260 0.96819 0.95695 0.92570 0.89236 0.87616 0.86949 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.88 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.80 2.39 -90.62 -0.22 -1.02 16 4 H 0.07 0.69 7.38 -51.93 -0.38 0.30 16 5 C -0.14 -1.47 8.84 37.15 0.33 -1.14 16 6 C 0.05 0.50 3.92 -3.82 -0.01 0.48 16 7 N -0.51 -6.05 4.56 -232.13 -1.06 -7.11 16 8 C 0.04 0.50 5.06 -3.25 -0.02 0.49 16 9 C 0.06 0.84 1.74 -89.76 -0.16 0.68 16 10 F -0.16 -2.45 16.99 2.25 0.04 -2.41 16 11 C 0.52 9.16 7.01 -10.97 -0.08 9.08 16 12 O -0.49 -10.47 17.19 5.56 0.10 -10.37 16 13 N -0.60 -9.83 2.93 -172.47 -0.50 -10.33 16 14 C 0.14 2.59 5.87 -4.04 -0.02 2.57 16 15 C -0.02 -0.54 4.37 -27.88 -0.12 -0.66 16 16 C -0.52 -14.42 9.66 -34.44 -0.33 -14.76 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 20 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.25 6.53 56.52 0.37 -5.88 16 24 C 0.09 1.14 6.51 -3.08 -0.02 1.12 16 25 C 0.06 0.79 1.98 -87.09 -0.17 0.62 16 26 F -0.17 -2.04 17.11 2.25 0.04 -2.00 16 27 C 0.03 0.38 6.26 -2.45 -0.02 0.37 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 34 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.35 7.82 -51.93 -0.41 -0.06 16 37 H 0.08 0.70 7.98 -51.93 -0.41 0.29 16 38 H 0.11 1.53 7.67 -51.93 -0.40 1.13 16 39 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 40 H 0.08 1.71 7.92 -51.93 -0.41 1.30 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.01 0.30 7.58 -51.93 -0.39 -0.10 16 43 H 0.02 0.62 7.18 -51.93 -0.37 0.24 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.11 1.14 7.75 -51.93 -0.40 0.73 16 47 H 0.11 1.35 7.47 -51.92 -0.39 0.96 16 48 H 0.08 0.74 7.50 -51.93 -0.39 0.35 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -31.87 383.06 -8.22 -40.09 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.98 Total: -1.88 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.72 Total: -1.99 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.79 Total: -43.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.10 Total: -10.37 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.87 -8.22 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272419805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.960 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds