Wall clock time and date at job start Tue Mar 31 2020 15:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.09001 * 109.47010 * 304.99681 * 3 2 1 5 5 C 1.52991 * 109.47343 * 65.00108 * 3 2 1 6 6 C 1.53004 * 109.46910 * 184.99920 * 3 2 1 7 7 N 1.46900 * 109.46913 * 175.00117 * 6 3 2 8 8 C 1.47148 * 111.00096 * 290.11999 * 7 6 3 9 9 C 1.53840 * 106.76140 * 219.04323 * 8 7 6 10 10 F 1.39896 * 112.67323 * 150.76471 * 9 8 7 11 11 C 1.51094 * 109.70029 * 277.14861 * 9 8 7 12 12 O 1.21277 * 124.86507 * 307.36593 * 11 9 8 13 13 N 1.34376 * 110.26255 * 127.33944 * 11 9 8 14 14 C 1.46496 * 124.33412 * 180.34702 * 13 11 9 15 15 C 1.52998 * 109.47238 * 90.02253 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.46717 * 111.32641 * 0.60810 * 13 11 9 25 25 C 1.54607 * 105.53022 * 342.46555 * 24 13 11 26 26 F 1.39898 * 113.98678 * 148.38073 * 25 24 13 27 27 C 1.47032 * 110.99921 * 168.45810 * 7 6 3 28 28 H 1.08993 * 109.46862 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47449 * 300.00006 * 1 2 3 30 30 H 1.09004 * 109.46628 * 60.00158 * 1 2 3 31 31 H 1.08997 * 109.47449 * 239.99994 * 2 1 3 32 32 H 1.08997 * 109.47056 * 119.99335 * 2 1 3 33 33 H 1.09002 * 109.47707 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47284 * 299.99734 * 5 3 2 35 35 H 1.09001 * 109.47417 * 59.99822 * 5 3 2 36 36 H 1.09003 * 109.47357 * 54.99753 * 6 3 2 37 37 H 1.09002 * 109.47363 * 294.99737 * 6 3 2 38 38 H 1.09004 * 110.00060 * 99.71295 * 8 7 6 39 39 H 1.09002 * 110.03621 * 338.39219 * 8 7 6 40 40 H 1.09000 * 109.47435 * 330.02157 * 14 13 11 41 41 H 1.09002 * 109.46784 * 210.01792 * 14 13 11 42 42 H 1.09001 * 109.47671 * 59.99927 * 15 14 13 43 43 H 1.08998 * 109.47454 * 299.99925 * 15 14 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 45 45 H 1.08995 * 110.21762 * 101.61218 * 24 13 11 46 46 H 1.08996 * 110.21777 * 223.54218 * 24 13 11 47 47 H 1.09011 * 109.75320 * 243.26379 * 27 7 6 48 48 H 1.09005 * 109.75667 * 3.95242 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 7 4.0445 2.8276 -0.2461 8 6 3.6660 3.4059 -1.5452 9 6 4.8593 4.2541 -2.0178 10 9 4.9529 4.3237 -3.4119 11 6 4.8037 5.6175 -1.3691 12 8 3.8409 6.3549 -1.3866 13 7 5.9737 5.8957 -0.7696 14 6 6.2544 7.1349 -0.0404 15 6 5.8734 6.9584 1.4309 16 6 6.1627 8.2330 2.1812 17 1 6.5773 9.0836 1.6607 18 6 5.8934 8.3148 3.5309 19 7 6.1455 9.4272 4.1855 20 14 5.1692 6.8459 4.4294 21 1 6.2679 5.9950 4.9531 22 1 4.3299 7.3209 5.5587 23 1 4.3342 6.0540 3.4909 24 6 6.9360 4.8021 -0.9442 25 6 6.0953 3.5736 -1.3616 26 9 6.7656 2.6882 -2.2123 27 6 5.5055 2.8938 -0.0942 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.9989 3.1541 1.3075 34 1 0.5489 2.1253 1.3969 35 1 2.0698 1.5876 2.1491 36 1 3.8571 0.8800 -1.0113 37 1 4.0030 0.9837 0.7597 38 1 2.7835 4.0352 -1.4303 39 1 3.4658 2.6110 -2.2637 40 1 5.6725 7.9498 -0.4711 41 1 7.3166 7.3678 -0.1152 42 1 6.4553 6.1436 1.8617 43 1 4.8113 6.7254 1.5058 44 1 5.9556 9.4848 5.1350 45 1 7.6539 5.0532 -1.7249 46 1 7.4533 4.6022 -0.0059 47 1 5.7579 3.4809 0.7889 48 1 5.9116 1.8870 0.0045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272419805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:05 Heat of formation + Delta-G solvation = -143.829633 kcal Electronic energy + Delta-G solvation = -30533.628431 eV Core-core repulsion = 26258.423303 eV Total energy + Delta-G solvation = -4275.205128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.67682 -48.65990 -41.95728 -39.58577 -37.87241 -36.88534 -35.39160 -33.61265 -31.67696 -30.86107 -30.14085 -27.83773 -27.23826 -26.54798 -24.55266 -23.24607 -22.44299 -22.39683 -21.11794 -20.60462 -19.12013 -18.73521 -17.94849 -17.63961 -17.07631 -16.82244 -16.52389 -16.37612 -16.14364 -15.99249 -15.70102 -15.57315 -15.35808 -15.07893 -14.81567 -14.69908 -14.66403 -14.49352 -14.14113 -14.09521 -13.72062 -13.57116 -13.42775 -13.13087 -12.91935 -12.82997 -12.76185 -12.69833 -12.25794 -12.16103 -11.98745 -11.94816 -11.76250 -11.51686 -11.48840 -11.40876 -11.38847 -10.95363 -10.77789 -9.92782 -9.55608 -8.30973 -6.36167 1.07027 1.33407 1.39181 1.50454 1.55684 2.15815 2.35138 2.38964 2.50573 2.59443 2.94382 3.04823 3.19158 3.43220 3.82934 3.91777 3.96801 4.09636 4.14980 4.19082 4.25466 4.35618 4.41135 4.47982 4.51331 4.55529 4.59580 4.64478 4.72548 4.73273 4.75088 4.86626 4.87266 4.99251 5.14778 5.18595 5.23164 5.24129 5.29545 5.40881 5.48460 5.55711 5.61430 5.67665 5.82544 5.86307 6.21393 6.68716 6.75318 7.29066 8.85166 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.004565 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.172029 B = 6132.635427 C = 7891.143885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.087 4.087 4 H 0.061 0.939 5 C -0.139 4.139 6 C 0.055 3.945 7 N -0.530 5.530 8 C 0.047 3.953 9 C 0.057 3.943 10 F -0.168 7.168 11 C 0.508 3.492 12 O -0.543 6.543 13 N -0.597 5.597 14 C 0.147 3.853 15 C -0.013 4.013 16 C -0.532 4.532 17 H 0.041 0.959 18 C 0.012 3.988 19 N -0.946 5.946 20 Si 0.945 3.055 21 H -0.254 1.254 22 H -0.288 1.288 23 H -0.256 1.256 24 C 0.085 3.915 25 C 0.081 3.919 26 F -0.162 7.162 27 C 0.035 3.965 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.004 0.996 44 H 0.267 0.733 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.106 0.894 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -24.514 -10.566 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.105 4.105 4 H 0.080 0.920 5 C -0.197 4.197 6 C -0.072 4.072 7 N -0.254 5.254 8 C -0.082 4.082 9 C 0.033 3.967 10 F -0.148 7.148 11 C 0.292 3.708 12 O -0.420 6.420 13 N -0.329 5.329 14 C 0.027 3.973 15 C -0.051 4.051 16 C -0.570 4.570 17 H 0.059 0.941 18 C -0.186 4.186 19 N -0.587 5.587 20 Si 0.768 3.232 21 H -0.179 1.179 22 H -0.214 1.214 23 H -0.180 1.180 24 C -0.037 4.037 25 C 0.060 3.940 26 F -0.142 7.142 27 C -0.093 4.093 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.148 0.852 47 H 0.124 0.876 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.401 -23.712 -10.019 25.965 hybrid contribution -0.014 -0.008 -0.346 0.346 sum -3.415 -23.719 -10.365 26.109 Atomic orbital electron populations 1.21810 0.95715 1.01905 1.01721 1.21503 0.96117 0.94862 1.02609 1.21155 0.93977 0.96946 0.98464 0.92038 1.21738 1.00664 1.00280 0.96969 1.22613 0.96053 0.86080 1.02455 1.63157 1.10970 1.21714 1.29600 1.23035 0.95561 0.98067 0.91509 1.22746 1.00154 0.96280 0.77493 1.92912 1.97084 1.97202 1.27599 1.20661 0.83223 0.87490 0.79437 1.90723 1.35791 1.54073 1.61371 1.48388 1.13048 1.19407 1.52095 1.21412 1.02139 0.82551 0.91208 1.19735 0.96225 0.96254 0.92914 1.21254 1.42494 0.99074 0.94199 0.94098 1.25890 0.95292 0.98825 0.98576 1.70043 1.50068 1.28706 1.09848 0.85734 0.79482 0.79798 0.78140 1.17872 1.21409 1.18010 1.22825 0.91486 0.83101 1.06328 1.23118 0.90830 0.89601 0.90432 1.92929 1.80961 1.68773 1.71520 1.23675 0.87257 1.03668 0.94652 0.91980 0.92813 0.93166 0.91283 0.91210 0.94103 0.92775 0.92523 0.92680 0.88692 0.89214 0.88923 0.92237 0.87929 0.94605 0.97780 0.92389 0.87164 0.85151 0.87593 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.25 16 2 C -0.11 -1.38 5.40 30.60 0.17 -1.22 16 3 C -0.09 -1.40 2.39 -10.79 -0.03 -1.42 16 4 H 0.06 1.12 7.38 -2.39 -0.02 1.10 16 5 C -0.14 -2.74 8.84 71.98 0.64 -2.10 16 6 C 0.05 0.85 3.92 86.30 0.34 1.19 16 7 N -0.53 -11.34 4.56 -888.33 -4.05 -15.39 16 8 C 0.05 1.12 5.06 86.54 0.44 1.56 16 9 C 0.06 1.55 1.74 -10.23 -0.02 1.53 16 10 F -0.17 -4.85 16.99 44.97 0.76 -4.09 16 11 C 0.51 17.91 7.01 87.84 0.62 18.52 16 12 O -0.54 -23.94 17.19 -3.02 -0.05 -23.99 16 13 N -0.60 -18.94 2.93 -818.20 -2.40 -21.33 16 14 C 0.15 5.55 5.87 86.38 0.51 6.06 16 15 C -0.01 -0.59 4.37 29.85 0.13 -0.46 16 16 C -0.53 -29.80 9.66 25.60 0.25 -29.55 16 17 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 18 C 0.01 0.68 5.47 84.65 0.46 1.14 16 19 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 20 Si 0.94 43.75 27.47 68.60 1.88 45.64 16 21 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.26 -11.53 6.53 99.48 0.65 -10.88 16 24 C 0.09 1.85 6.51 86.89 0.57 2.41 16 25 C 0.08 1.71 1.98 -8.51 -0.02 1.69 16 26 F -0.16 -3.31 17.11 44.97 0.77 -2.54 16 27 C 0.04 0.66 6.26 87.12 0.55 1.21 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.73 6.57 -2.39 -0.02 0.71 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.04 1.04 7.75 -2.39 -0.02 1.02 16 34 H 0.05 1.00 6.57 -2.38 -0.02 0.99 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.72 7.82 -2.39 -0.02 0.70 16 37 H 0.09 1.25 7.98 -2.39 -0.02 1.23 16 38 H 0.09 2.53 7.67 -2.39 -0.02 2.51 16 39 H 0.09 1.82 7.51 -2.39 -0.02 1.80 16 40 H 0.06 2.52 7.92 -2.39 -0.02 2.50 16 41 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 43 H 0.00 0.19 7.18 -2.39 -0.02 0.17 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.13 2.24 7.75 -2.39 -0.02 2.22 16 47 H 0.11 2.17 7.47 -2.38 -0.02 2.15 16 48 H 0.11 1.46 7.50 -2.38 -0.02 1.44 16 Total: -1.00 -71.39 383.06 3.39 -68.00 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.88 Total: 12.63 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.29 Total: -0.69 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -6.15 Total: -94.96 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 1.53 Total: -6.63 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -71.39 3.39 -68.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272419805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.832 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds