Wall clock time and date at job start Tue Mar 31 2020 15:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47327 * 2 1 4 4 H 1.09004 * 109.47438 * 305.00505 * 3 2 1 5 5 C 1.52998 * 109.47601 * 184.99606 * 3 2 1 6 6 N 1.46500 * 109.46814 * 64.99812 * 3 2 1 7 7 C 1.46771 * 124.34785 * 239.99820 * 6 3 2 8 8 C 1.54252 * 105.47170 * 197.29090 * 7 6 3 9 9 F 1.39895 * 113.32815 * 96.81530 * 8 7 6 10 10 C 1.53707 * 109.53543 * 224.34334 * 8 7 6 11 11 N 1.47111 * 106.88246 * 81.81087 * 10 8 7 12 12 C 1.46897 * 110.99848 * 140.67853 * 11 10 8 13 13 C 1.52995 * 109.47471 * 53.27152 * 12 11 10 14 14 C 1.53005 * 109.47173 * 174.68251 * 13 12 11 15 15 C 1.50697 * 109.47095 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00174 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00010 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00032 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47090 * 60.00129 * 19 17 15 21 21 H 1.48503 * 109.46996 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47311 * 299.99739 * 19 17 15 23 23 C 1.46973 * 109.24288 * 17.95056 * 11 10 8 24 24 C 1.53739 * 108.13327 * 358.73300 * 23 11 10 25 25 F 1.39896 * 112.74548 * 107.45305 * 24 23 11 26 26 C 1.34386 * 124.34484 * 59.96498 * 6 3 2 27 27 O 1.21281 * 124.89783 * 0.17056 * 26 6 3 28 28 H 1.08996 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47389 * 299.99670 * 1 2 3 30 30 H 1.09000 * 109.46825 * 60.00116 * 1 2 3 31 31 H 1.09005 * 109.47254 * 239.99937 * 2 1 3 32 32 H 1.09005 * 109.47268 * 120.00438 * 2 1 3 33 33 H 1.09004 * 109.46415 * 60.00311 * 5 3 2 34 34 H 1.08999 * 109.47161 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46973 * 300.00894 * 5 3 2 36 36 H 1.09004 * 110.24786 * 78.29430 * 7 6 3 37 37 H 1.09003 * 110.24932 * 316.28943 * 7 6 3 38 38 H 1.08995 * 109.98125 * 322.45174 * 10 8 7 39 39 H 1.09010 * 110.00969 * 201.18259 * 10 8 7 40 40 H 1.09004 * 109.46450 * 173.27452 * 12 11 10 41 41 H 1.09003 * 109.47395 * 293.26845 * 12 11 10 42 42 H 1.09000 * 109.47208 * 294.68681 * 13 12 11 43 43 H 1.09002 * 109.47121 * 54.68658 * 13 12 11 44 44 H 1.08996 * 109.47049 * 299.99967 * 14 13 12 45 45 H 1.09002 * 109.46765 * 60.00189 * 14 13 12 46 46 H 0.97006 * 120.00166 * 180.02562 * 18 17 15 47 47 H 1.09007 * 109.73658 * 118.40355 * 23 11 10 48 48 H 1.08997 * 109.73944 * 239.05844 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1256 6 7 1.6524 2.0974 1.2518 7 6 0.8076 3.2948 1.3329 8 6 1.0341 3.8631 2.7489 9 9 1.9824 4.8908 2.7882 10 6 -0.3168 4.2602 3.3655 11 7 -0.9180 3.0307 3.9049 12 6 -1.5854 3.2900 5.1876 13 6 -2.5738 4.4463 5.0237 14 6 -3.3636 4.6299 6.3212 15 6 -4.3375 5.7685 6.1596 16 1 -4.3885 6.3070 5.2247 17 6 -5.1636 6.1227 7.2050 18 7 -5.1020 5.4667 8.3432 19 14 -6.3704 7.5345 7.0049 20 1 -7.3079 7.2306 5.8940 21 1 -7.1370 7.7127 8.2642 22 1 -5.6261 8.7821 6.6973 23 6 0.1248 2.0054 4.0514 24 6 1.4525 2.5987 3.5526 25 9 2.3424 2.8841 4.5937 26 6 2.0243 1.6785 2.4734 27 8 2.7255 0.7135 2.6924 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8532 0.9570 -1.0571 34 1 3.9282 2.4720 -0.1252 35 1 3.9994 0.9052 0.7162 36 1 -0.2403 3.0270 1.1971 37 1 1.1120 4.0229 0.5810 38 1 -0.9647 4.6867 2.5998 39 1 -0.1629 4.9824 4.1674 40 1 -2.1217 2.3958 5.5053 41 1 -0.8402 3.5526 5.9384 42 1 -2.0274 5.3621 4.7981 43 1 -3.2617 4.2234 4.2081 44 1 -3.9100 3.7142 6.5466 45 1 -2.6757 4.8528 7.1368 46 1 -5.6834 5.7157 9.0787 47 1 0.2187 1.7231 5.1001 48 1 -0.1337 1.1297 3.4563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274041023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:41 Heat of formation + Delta-G solvation = -126.614573 kcal Electronic energy + Delta-G solvation = -30149.034957 eV Core-core repulsion = 25874.576330 eV Total energy + Delta-G solvation = -4274.458627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.60709 -47.61503 -41.16132 -38.69089 -36.90031 -35.30130 -33.70878 -31.98974 -30.72915 -30.09836 -29.38723 -26.50856 -26.40765 -24.41616 -23.53452 -22.36759 -21.63930 -21.42986 -19.94827 -19.59871 -17.74876 -17.39681 -16.36839 -16.26685 -16.17313 -15.84626 -15.78212 -15.52785 -14.93292 -14.65315 -14.48539 -14.25918 -14.16753 -13.94867 -13.91150 -13.71837 -13.57818 -13.37687 -13.05410 -12.82048 -12.69673 -12.41799 -12.28439 -12.16143 -11.71609 -11.66418 -11.55532 -11.41966 -11.30125 -11.09255 -10.98070 -10.85845 -10.62594 -10.58105 -9.85118 -9.80261 -9.40975 -9.21904 -9.12466 -8.51839 -8.37466 -6.02644 -4.05366 1.96638 2.25284 3.11144 3.31523 3.36315 3.37995 3.38620 3.46323 3.60948 3.92588 4.14937 4.24325 4.36047 4.44307 4.56008 4.68685 4.78552 4.93613 4.97633 5.15672 5.19346 5.23861 5.25909 5.28763 5.33288 5.39090 5.41498 5.51608 5.56355 5.61767 5.65148 5.70558 5.75976 5.83933 5.95752 6.12680 6.16469 6.44388 6.51325 6.56985 6.74858 6.99283 7.07422 7.61849 7.62676 7.76298 7.96400 8.38519 9.01326 9.58943 11.08701 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.002665 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.768334 B =10505.892808 C =10714.805693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.158 3.842 4 H 0.095 0.905 5 C -0.171 4.171 6 N -0.603 5.603 7 C 0.093 3.907 8 C 0.078 3.922 9 F -0.168 7.168 10 C 0.034 3.966 11 N -0.514 5.514 12 C 0.047 3.953 13 C -0.110 4.110 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.039 3.961 24 C 0.052 3.948 25 F -0.159 7.159 26 C 0.519 3.481 27 O -0.499 6.499 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.014 0.986 46 H 0.261 0.739 47 H 0.088 0.912 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.427 -8.511 -19.283 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.057 3.943 4 H 0.113 0.887 5 C -0.229 4.229 6 N -0.337 5.337 7 C -0.030 4.030 8 C 0.057 3.943 9 F -0.148 7.148 10 C -0.094 4.094 11 N -0.238 5.238 12 C -0.080 4.080 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.090 4.090 24 C 0.028 3.972 25 F -0.139 7.139 26 C 0.302 3.698 27 O -0.373 6.373 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.411 -9.231 -19.373 25.850 hybrid contribution 0.128 1.310 0.742 1.511 sum 14.540 -7.921 -18.631 24.925 Atomic orbital electron populations 1.21758 0.95046 1.02041 1.02024 1.21984 0.96781 0.95578 1.03738 1.21155 0.95539 0.93672 0.83914 0.88712 1.22210 0.94607 1.02763 1.03296 1.48147 1.50712 1.28913 1.05927 1.22793 0.97524 0.87385 0.95308 1.22814 0.89513 0.85166 0.96768 1.92935 1.65349 1.59347 1.97183 1.23179 0.90724 0.94271 1.01268 1.63451 1.24945 1.06341 1.29104 1.22684 0.97021 1.01351 0.86904 1.21748 0.96724 0.94445 1.01830 1.19056 0.94419 0.97048 0.90966 1.21178 1.19781 1.16156 0.98843 0.92707 1.25022 0.97374 0.96724 0.95311 1.69949 1.39291 1.40808 1.03412 0.86658 0.81232 0.82766 0.77347 1.20211 1.21300 1.20250 1.23131 0.85532 0.96854 1.03502 1.23187 0.91415 0.96174 0.86426 1.92955 1.69482 1.93891 1.57589 1.20747 0.80052 0.85053 0.83930 1.90728 1.36118 1.27260 1.83158 0.92467 0.92423 0.92687 0.90576 0.90213 0.91033 0.92220 0.90923 0.87048 0.88164 0.87250 0.90157 0.89962 0.94378 0.93277 0.92150 0.96433 0.96715 0.92906 0.89338 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.80 37.16 0.36 -0.71 16 2 C -0.14 -1.07 5.36 -26.73 -0.14 -1.21 16 3 C 0.16 1.17 2.86 -67.93 -0.19 0.97 16 4 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 5 C -0.17 -1.31 9.20 37.16 0.34 -0.97 16 6 N -0.60 -5.62 2.28 -164.28 -0.37 -6.00 16 7 C 0.09 0.75 6.51 -3.24 -0.02 0.73 16 8 C 0.08 0.86 1.89 -88.23 -0.17 0.70 16 9 F -0.17 -2.16 17.08 2.25 0.04 -2.12 16 10 C 0.03 0.40 4.70 -3.34 -0.02 0.38 16 11 N -0.51 -6.58 5.23 -233.45 -1.22 -7.80 16 12 C 0.05 0.74 4.62 -3.83 -0.02 0.72 16 13 C -0.11 -2.07 4.78 -26.73 -0.13 -2.20 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 16 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.04 0.47 6.24 -3.40 -0.02 0.45 16 24 C 0.05 0.67 1.86 -88.91 -0.16 0.50 16 25 F -0.16 -2.47 17.04 2.25 0.04 -2.43 16 26 C 0.52 6.51 6.24 -10.05 -0.06 6.45 16 27 O -0.50 -7.59 15.06 5.56 0.08 -7.51 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.48 7.75 -51.93 -0.40 0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.81 6.64 -51.93 -0.34 0.46 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.75 6.78 -51.93 -0.35 0.40 16 36 H 0.11 0.77 7.70 -51.93 -0.40 0.37 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.11 1.09 7.93 -51.93 -0.41 0.68 16 39 H 0.08 1.07 6.85 -51.92 -0.36 0.71 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.04 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.05 0.90 6.73 -51.93 -0.35 0.55 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.09 1.10 7.50 -51.93 -0.39 0.71 16 48 H 0.10 1.11 7.59 -51.93 -0.39 0.72 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -31.75 383.52 -8.73 -40.48 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -8.01 Total: -3.89 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.78 Total: -6.94 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.86 Total: -39.66 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.75 -8.73 -40.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274041023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.133 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds