Wall clock time and date at job start Tue Mar 31 2020 15:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47327 * 2 1 4 4 H 1.09004 * 109.47438 * 305.00505 * 3 2 1 5 5 C 1.52998 * 109.47601 * 184.99606 * 3 2 1 6 6 N 1.46500 * 109.46814 * 64.99812 * 3 2 1 7 7 C 1.46771 * 124.34785 * 239.99820 * 6 3 2 8 8 C 1.54252 * 105.47170 * 197.29090 * 7 6 3 9 9 F 1.39895 * 113.32815 * 96.81530 * 8 7 6 10 10 C 1.53707 * 109.53543 * 224.34334 * 8 7 6 11 11 N 1.47111 * 106.88246 * 81.81087 * 10 8 7 12 12 C 1.46897 * 110.99848 * 140.67853 * 11 10 8 13 13 C 1.52995 * 109.47471 * 53.27152 * 12 11 10 14 14 C 1.53005 * 109.47173 * 174.68251 * 13 12 11 15 15 C 1.50697 * 109.47095 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00174 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00010 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00032 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47090 * 60.00129 * 19 17 15 21 21 H 1.48503 * 109.46996 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47311 * 299.99739 * 19 17 15 23 23 C 1.46973 * 109.24288 * 17.95056 * 11 10 8 24 24 C 1.53739 * 108.13327 * 358.73300 * 23 11 10 25 25 F 1.39896 * 112.74548 * 107.45305 * 24 23 11 26 26 C 1.34386 * 124.34484 * 59.96498 * 6 3 2 27 27 O 1.21281 * 124.89783 * 0.17056 * 26 6 3 28 28 H 1.08996 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47389 * 299.99670 * 1 2 3 30 30 H 1.09000 * 109.46825 * 60.00116 * 1 2 3 31 31 H 1.09005 * 109.47254 * 239.99937 * 2 1 3 32 32 H 1.09005 * 109.47268 * 120.00438 * 2 1 3 33 33 H 1.09004 * 109.46415 * 60.00311 * 5 3 2 34 34 H 1.08999 * 109.47161 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.46973 * 300.00894 * 5 3 2 36 36 H 1.09004 * 110.24786 * 78.29430 * 7 6 3 37 37 H 1.09003 * 110.24932 * 316.28943 * 7 6 3 38 38 H 1.08995 * 109.98125 * 322.45174 * 10 8 7 39 39 H 1.09010 * 110.00969 * 201.18259 * 10 8 7 40 40 H 1.09004 * 109.46450 * 173.27452 * 12 11 10 41 41 H 1.09003 * 109.47395 * 293.26845 * 12 11 10 42 42 H 1.09000 * 109.47208 * 294.68681 * 13 12 11 43 43 H 1.09002 * 109.47121 * 54.68658 * 13 12 11 44 44 H 1.08996 * 109.47049 * 299.99967 * 14 13 12 45 45 H 1.09002 * 109.46765 * 60.00189 * 14 13 12 46 46 H 0.97006 * 120.00166 * 180.02562 * 18 17 15 47 47 H 1.09007 * 109.73658 * 118.40355 * 23 11 10 48 48 H 1.08997 * 109.73944 * 239.05844 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1256 6 7 1.6524 2.0974 1.2518 7 6 0.8076 3.2948 1.3329 8 6 1.0341 3.8631 2.7489 9 9 1.9824 4.8908 2.7882 10 6 -0.3168 4.2602 3.3655 11 7 -0.9180 3.0307 3.9049 12 6 -1.5854 3.2900 5.1876 13 6 -2.5738 4.4463 5.0237 14 6 -3.3636 4.6299 6.3212 15 6 -4.3375 5.7685 6.1596 16 1 -4.3885 6.3070 5.2247 17 6 -5.1636 6.1227 7.2050 18 7 -5.1020 5.4667 8.3432 19 14 -6.3704 7.5345 7.0049 20 1 -7.3079 7.2306 5.8940 21 1 -7.1370 7.7127 8.2642 22 1 -5.6261 8.7821 6.6973 23 6 0.1248 2.0054 4.0514 24 6 1.4525 2.5987 3.5526 25 9 2.3424 2.8841 4.5937 26 6 2.0243 1.6785 2.4734 27 8 2.7255 0.7135 2.6924 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8532 0.9570 -1.0571 34 1 3.9282 2.4720 -0.1252 35 1 3.9994 0.9052 0.7162 36 1 -0.2403 3.0270 1.1971 37 1 1.1120 4.0229 0.5810 38 1 -0.9647 4.6867 2.5998 39 1 -0.1629 4.9824 4.1674 40 1 -2.1217 2.3958 5.5053 41 1 -0.8402 3.5526 5.9384 42 1 -2.0274 5.3621 4.7981 43 1 -3.2617 4.2234 4.2081 44 1 -3.9100 3.7142 6.5466 45 1 -2.6757 4.8528 7.1368 46 1 -5.6834 5.7157 9.0787 47 1 0.2187 1.7231 5.1001 48 1 -0.1337 1.1297 3.4563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274041023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:40 Heat of formation + Delta-G solvation = -145.913494 kcal Electronic energy + Delta-G solvation = -30149.871821 eV Core-core repulsion = 25874.576330 eV Total energy + Delta-G solvation = -4275.295491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.64022 -48.65472 -42.04290 -39.72719 -37.77104 -36.42857 -35.28787 -33.55252 -31.63110 -31.02195 -30.44595 -28.05916 -27.28759 -25.47845 -24.61783 -23.35601 -22.74518 -22.47812 -21.35220 -20.48625 -18.79020 -18.38469 -18.19853 -17.19724 -17.10200 -16.91307 -16.68994 -16.57401 -16.36633 -16.06526 -15.56710 -15.39857 -15.13316 -14.81007 -14.76322 -14.62595 -14.49551 -14.31154 -14.22681 -14.04069 -13.75121 -13.51789 -13.40897 -13.24098 -13.08789 -12.80201 -12.65704 -12.46670 -12.32114 -12.25059 -12.18170 -11.99958 -11.85222 -11.74699 -11.51734 -11.37859 -11.13215 -10.72870 -10.52132 -9.96885 -9.63100 -8.17596 -6.28312 1.02933 1.42693 1.45361 1.47016 1.53051 2.19286 2.42050 2.48034 2.56679 2.61560 3.01136 3.16321 3.25764 3.31332 3.75538 3.83820 4.03845 4.11115 4.14654 4.17800 4.30799 4.35801 4.42050 4.42885 4.50157 4.59936 4.62107 4.67421 4.68505 4.72001 4.74739 4.92544 4.93116 5.07723 5.08414 5.17555 5.23537 5.24068 5.40723 5.49554 5.52936 5.63846 5.68804 5.76621 5.81855 5.88670 6.27390 6.73420 6.89427 7.41202 8.94168 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.002665 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.768334 B =10505.892808 C =10714.805693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.153 3.847 4 H 0.133 0.867 5 C -0.168 4.168 6 N -0.591 5.591 7 C 0.097 3.903 8 C 0.081 3.919 9 F -0.179 7.179 10 C 0.031 3.969 11 N -0.503 5.503 12 C 0.058 3.942 13 C -0.092 4.092 14 C 0.024 3.976 15 C -0.540 4.540 16 H 0.065 0.935 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.043 3.957 24 C 0.034 3.966 25 F -0.181 7.181 26 C 0.515 3.485 27 O -0.536 6.536 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.068 0.932 44 H -0.007 1.007 45 H -0.014 1.014 46 H 0.262 0.738 47 H 0.080 0.920 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.605 -7.463 -22.746 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.053 3.947 4 H 0.150 0.850 5 C -0.226 4.226 6 N -0.324 5.324 7 C -0.025 4.025 8 C 0.061 3.939 9 F -0.159 7.159 10 C -0.097 4.097 11 N -0.226 5.226 12 C -0.070 4.070 13 C -0.130 4.130 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.788 3.212 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.086 4.086 24 C 0.010 3.990 25 F -0.161 7.161 26 C 0.299 3.701 27 O -0.412 6.412 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.012 0.988 45 H 0.004 0.996 46 H 0.071 0.929 47 H 0.098 0.902 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.589 -8.168 -22.884 27.839 hybrid contribution 0.434 0.953 1.828 2.107 sum 14.022 -7.216 -21.055 26.306 Atomic orbital electron populations 1.21742 0.94499 1.02051 1.02308 1.21949 0.97160 0.95569 1.03086 1.21466 0.95468 0.93952 0.83792 0.84953 1.22191 0.94823 1.02496 1.03087 1.48280 1.49769 1.28836 1.05490 1.23016 0.98525 0.87222 0.93750 1.22913 0.88525 0.84023 0.98478 1.92915 1.65814 1.59803 1.97346 1.23300 0.91656 0.93275 1.01472 1.63466 1.25271 1.06996 1.26891 1.22410 0.96356 1.00018 0.88200 1.21464 0.96821 0.96067 0.98625 1.18972 0.93993 0.95285 0.93121 1.21682 1.20120 1.16769 0.99209 0.91729 1.25987 0.99486 0.99570 0.94956 1.70095 1.40459 1.42712 1.04360 0.85527 0.78803 0.79385 0.77512 1.18904 1.21262 1.19172 1.23113 0.85181 0.96949 1.03364 1.23505 0.91262 0.97783 0.86415 1.92898 1.70295 1.94147 1.58809 1.20727 0.79982 0.84571 0.84840 1.90710 1.37965 1.28787 1.83781 0.92760 0.93691 0.90663 0.88680 0.93457 0.88694 0.92201 0.94203 0.84872 0.84953 0.84467 0.91974 0.90125 0.95472 0.92551 0.91362 0.98819 0.99552 0.92893 0.90204 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 71.98 0.71 -1.02 16 2 C -0.14 -1.81 5.36 30.59 0.16 -1.64 16 3 C 0.15 1.81 2.86 44.99 0.13 1.94 16 4 H 0.13 0.66 8.07 -2.38 -0.02 0.64 16 5 C -0.17 -2.28 9.20 71.98 0.66 -1.61 16 6 N -0.59 -9.69 2.28 -792.27 -1.81 -11.50 16 7 C 0.10 1.20 6.51 86.75 0.56 1.77 16 8 C 0.08 1.65 1.89 -9.25 -0.02 1.64 16 9 F -0.18 -4.35 17.08 44.97 0.77 -3.58 16 10 C 0.03 0.67 4.70 86.50 0.41 1.08 16 11 N -0.50 -12.20 5.23 -892.49 -4.67 -16.87 16 12 C 0.06 1.80 4.62 86.30 0.40 2.20 16 13 C -0.09 -3.42 4.78 30.59 0.15 -3.28 16 14 C 0.02 1.22 4.97 29.85 0.15 1.36 16 15 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 16 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 17 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 18 N -0.94 -56.65 13.29 21.45 0.28 -56.37 16 19 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C 0.04 1.02 6.24 86.54 0.54 1.56 16 24 C 0.03 0.87 1.86 -9.69 -0.02 0.85 16 25 F -0.18 -5.84 17.04 44.97 0.77 -5.07 16 26 C 0.52 12.77 6.24 88.44 0.55 13.32 16 27 O -0.54 -16.87 15.06 -3.03 -0.05 -16.91 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.63 7.75 -2.39 -0.02 0.62 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.95 6.64 -2.38 -0.02 0.93 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 0.82 6.78 -2.39 -0.02 0.80 16 36 H 0.13 1.19 7.70 -2.38 -0.02 1.17 16 37 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.14 2.22 7.93 -2.39 -0.02 2.20 16 39 H 0.06 1.60 6.85 -2.38 -0.02 1.58 16 40 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.03 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.06 2.01 6.73 -2.39 -0.02 2.00 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 47 H 0.08 2.05 7.50 -2.38 -0.02 2.03 16 48 H 0.12 2.44 7.59 -2.39 -0.02 2.42 16 Total: -1.00 -71.66 383.52 3.34 -68.32 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.94 Total: 7.63 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.08 Total: -11.06 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -6.19 Total: -84.74 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 1.53 Total: -8.65 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.66 3.34 -68.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274041023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.590 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds