Wall clock time and date at job start Tue Mar 31 2020 16:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 115.56170 * 2 1 4 4 C 1.53001 * 117.49363 * 145.68575 * 2 1 3 5 5 C 1.53001 * 117.49458 * 214.30446 * 2 1 3 6 6 H 1.08998 * 117.51959 * 359.97438 * 5 2 1 7 7 C 1.53000 * 117.49611 * 145.02326 * 5 2 1 8 8 N 1.46900 * 109.47176 * 243.31509 * 7 5 2 9 9 C 1.48352 * 111.01106 * 54.88964 * 8 7 5 10 10 C 1.51072 * 105.64090 * 92.19675 * 9 8 7 11 11 N 1.34940 * 144.32948 * 197.17843 * 10 9 8 12 12 H 0.97005 * 124.88003 * 0.06261 * 11 10 9 13 13 N 1.28539 * 110.24082 * 180.02562 * 11 10 9 14 14 C 1.31937 * 110.05013 * 359.97438 * 13 11 10 15 15 C 1.47708 * 126.56628 * 180.02562 * 14 13 11 16 16 O 1.21565 * 120.00057 * 179.97438 * 15 14 13 17 17 N 1.34778 * 119.99713 * 359.97438 * 15 14 13 18 18 C 1.47061 * 136.06410 * 359.63142 * 17 15 14 19 19 C 1.53238 * 88.08845 * 207.20218 * 18 17 15 20 20 C 1.50693 * 114.32599 * 220.46896 * 19 18 17 21 21 H 1.08007 * 119.99734 * 93.75860 * 20 19 18 22 22 C 1.37877 * 120.00175 * 273.75375 * 20 19 18 23 23 N 1.31517 * 119.99938 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99691 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.46996 * 89.99906 * 24 22 20 26 26 H 1.48498 * 109.46704 * 209.99947 * 24 22 20 27 27 H 1.48496 * 109.47069 * 329.99722 * 24 22 20 28 28 C 1.47076 * 136.05111 * 180.02562 * 17 15 14 29 29 C 1.35375 * 108.59491 * 17.20678 * 10 9 8 30 30 C 1.48192 * 110.99946 * 169.18300 * 8 7 5 31 31 H 1.08997 * 109.47415 * 205.69295 * 1 2 3 32 32 H 1.09006 * 109.46762 * 325.69261 * 1 2 3 33 33 H 1.08999 * 109.46949 * 85.69089 * 1 2 3 34 34 H 1.08998 * 117.50198 * 0.02562 * 4 2 1 35 35 H 1.08998 * 117.51703 * 214.97056 * 4 2 1 36 36 H 1.09000 * 109.46707 * 123.31352 * 7 5 2 37 37 H 1.08999 * 109.46773 * 3.31732 * 7 5 2 38 38 H 1.08999 * 110.22177 * 333.14883 * 9 8 7 39 39 H 1.08994 * 110.26472 * 211.26919 * 9 8 7 40 40 H 1.09003 * 113.46643 * 321.93609 * 18 17 15 41 41 H 1.08993 * 113.46944 * 92.36914 * 18 17 15 42 42 H 1.09001 * 114.01798 * 87.71163 * 19 18 17 43 43 H 0.96995 * 119.99588 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.46252 * 267.62311 * 28 17 15 45 45 H 1.08992 * 113.46775 * 38.06620 * 28 17 15 46 46 H 1.09000 * 110.23400 * 148.70522 * 30 8 7 47 47 H 1.08997 * 110.23055 * 26.82439 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1211 -0.7649 6 1 1.6114 -1.8590 -1.2678 7 6 3.5490 -0.7762 -1.4714 8 7 3.3858 -0.9516 -2.9207 9 6 2.2371 -0.1606 -3.4263 10 6 2.8143 1.1687 -3.8529 11 7 2.5122 2.4486 -4.1556 12 1 1.6186 2.8257 -4.1423 13 7 3.5789 3.0965 -4.4631 14 6 4.6293 2.3021 -4.3840 15 6 6.0333 2.6697 -4.6588 16 8 6.9124 1.8375 -4.5475 17 7 6.3396 3.9277 -5.0330 18 6 5.5935 5.1712 -5.2777 19 6 6.7026 5.5847 -6.2508 20 6 7.0856 7.0401 -6.1732 21 1 7.9070 7.3495 -5.5438 22 6 6.3876 7.9767 -6.9057 23 7 6.7223 9.2468 -6.8383 24 14 4.9667 7.4416 -7.9938 25 1 3.7045 7.4764 -7.2123 26 1 4.8568 8.3631 -9.1531 27 1 5.2094 6.0600 -8.4810 28 6 7.5666 4.6592 -5.3832 29 6 4.1547 1.0343 -3.9869 30 6 4.5402 -0.3855 -3.6575 31 1 -0.3634 -0.9260 0.4455 32 1 -0.3633 0.8489 0.5793 33 1 -0.3633 0.0772 -1.0248 34 1 1.6111 -1.8587 1.2681 35 1 3.1716 -0.8756 1.2684 36 1 4.3391 -1.4356 -1.1122 37 1 3.8150 0.2592 -1.2583 38 1 1.5021 -0.0154 -2.6346 39 1 1.7785 -0.6629 -4.2779 40 1 4.6303 5.0112 -5.7623 41 1 5.5230 5.8147 -4.4009 42 1 6.5532 5.2299 -7.2706 43 1 6.2314 9.9056 -7.3540 44 1 8.0274 5.1650 -4.5347 45 1 8.2773 4.0649 -5.9572 46 1 4.7169 -0.9502 -4.5729 47 1 5.4311 -0.3981 -3.0295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277141900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:56 Heat of formation + Delta-G solvation = 133.305871 kcal Electronic energy + Delta-G solvation = -28081.838678 eV Core-core repulsion = 24269.340234 eV Total energy + Delta-G solvation = -3812.498444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.06130 -39.54248 -39.29919 -37.40326 -37.13310 -32.65931 -32.07795 -31.45168 -29.58837 -29.09066 -28.08242 -26.58284 -25.71359 -25.03455 -23.19783 -22.63604 -21.29299 -20.72006 -20.22797 -19.92945 -18.24284 -17.78791 -17.16750 -16.55951 -16.41713 -15.90123 -15.37521 -15.25879 -14.98218 -14.72600 -14.37593 -13.93365 -13.85320 -13.40050 -13.34847 -13.21247 -12.90424 -12.58171 -12.49249 -12.40373 -12.20958 -12.00326 -11.76613 -11.75445 -11.69785 -11.52840 -11.30538 -10.90536 -10.66111 -10.44940 -10.09913 -9.97805 -9.88748 -9.43588 -9.39637 -9.20461 -9.11024 -8.76939 -8.65102 -8.01427 -6.19044 -4.21473 1.62780 1.94516 2.47804 3.23036 3.27135 3.30732 3.34196 3.37042 3.55877 3.70426 4.03865 4.22482 4.32871 4.42397 4.52019 4.62485 4.64118 4.86747 4.90235 5.00876 5.04156 5.15891 5.19187 5.26674 5.35944 5.37337 5.40978 5.43350 5.50236 5.62467 5.70942 5.80929 5.81709 5.83173 5.92017 5.99816 6.09187 6.19209 6.29845 6.31683 6.45319 6.50315 6.55900 6.61762 6.89677 7.21213 7.57415 7.76999 8.29097 8.38795 8.63653 8.84119 9.41961 10.92888 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.002707 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.506783 B =10341.584764 C =10884.346639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.148 4.148 6 H 0.114 0.886 7 C 0.067 3.933 8 N -0.487 5.487 9 C 0.118 3.882 10 C -0.050 4.050 11 N -0.358 5.358 12 H 0.444 0.556 13 N -0.240 5.240 14 C 0.033 3.967 15 C 0.616 3.384 16 O -0.550 6.550 17 N -0.630 5.630 18 C 0.095 3.905 19 C -0.015 4.015 20 C -0.508 4.508 21 H 0.081 0.919 22 C 0.078 3.922 23 N -0.893 5.893 24 Si 0.873 3.127 25 H -0.274 1.274 26 H -0.287 1.287 27 H -0.262 1.262 28 C 0.117 3.883 29 C -0.194 4.194 30 C 0.113 3.887 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.266 0.734 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.642 -20.325 11.391 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 H 0.119 0.881 4 C -0.207 4.207 5 C -0.166 4.166 6 H 0.132 0.868 7 C -0.061 4.061 8 N -0.208 5.208 9 C -0.012 4.012 10 C -0.179 4.179 11 N -0.070 5.070 12 H 0.288 0.712 13 N -0.075 5.075 14 C -0.128 4.128 15 C 0.403 3.597 16 O -0.427 6.427 17 N -0.363 5.363 18 C -0.028 4.028 19 C -0.035 4.035 20 C -0.546 4.546 21 H 0.099 0.901 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.700 3.300 25 H -0.200 1.200 26 H -0.213 1.213 27 H -0.187 1.187 28 C -0.005 4.005 29 C -0.206 4.206 30 C -0.016 4.016 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.573 -20.296 11.123 27.350 hybrid contribution -1.098 0.438 -0.163 1.194 sum -15.671 -19.858 10.960 27.569 Atomic orbital electron populations 1.21365 0.92735 1.02046 1.01799 1.22556 0.95410 0.94646 1.05210 0.88102 1.23115 1.02625 1.01245 0.93678 1.22403 0.98662 1.01787 0.93748 0.86774 1.22022 0.96443 1.00382 0.87229 1.65794 1.02704 1.47752 1.04546 1.21402 0.94706 0.84082 1.01036 1.22874 0.97420 0.89807 1.07815 1.42543 1.09276 1.05844 1.49350 0.71246 1.74038 0.92099 1.22953 1.18401 1.21301 0.93374 0.90659 1.07433 1.16383 0.85055 0.81229 0.77062 1.90738 1.47770 1.49531 1.54680 1.49751 1.14366 1.07779 1.64379 1.23774 0.97944 0.81046 0.99998 1.20903 0.91985 0.96259 0.94363 1.20753 1.17940 0.87873 1.28041 0.90129 1.24986 0.96904 0.94735 0.95946 1.69892 1.40727 1.01018 1.41370 0.86879 0.83124 0.79155 0.80794 1.19970 1.21255 1.18702 1.23163 0.88314 0.90739 0.98262 1.21363 0.93724 0.96773 1.08696 1.21009 0.93662 0.87300 0.99617 0.92428 0.92160 0.92288 0.88562 0.88752 0.89401 0.93809 0.89206 0.87931 0.92055 0.89840 0.91595 0.92397 0.89951 0.91749 0.88065 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.19 37.16 0.38 -0.30 16 2 C -0.16 -1.09 5.57 -90.62 -0.50 -1.60 16 3 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 4 C -0.17 -1.09 9.90 -26.73 -0.26 -1.35 16 5 C -0.15 -1.03 3.94 -90.62 -0.36 -1.39 16 6 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 7 C 0.07 0.59 5.15 -3.82 -0.02 0.57 16 8 N -0.49 -4.65 5.66 -234.85 -1.33 -5.98 16 9 C 0.12 1.01 6.41 -3.99 -0.03 0.98 16 10 C -0.05 -0.58 8.21 -82.07 -0.67 -1.25 16 11 N -0.36 -4.25 6.83 33.58 0.23 -4.02 16 12 H 0.44 3.51 8.96 -190.39 -1.71 1.80 16 13 N -0.24 -3.89 10.79 33.35 0.36 -3.53 16 14 C 0.03 0.59 7.10 -82.88 -0.59 0.00 16 15 C 0.62 12.69 8.08 -12.39 -0.10 12.59 16 16 O -0.55 -12.28 17.70 5.31 0.09 -12.19 16 17 N -0.63 -13.11 3.69 -186.57 -0.69 -13.79 16 18 C 0.10 1.99 6.89 -8.64 -0.06 1.93 16 19 C -0.02 -0.35 2.98 -91.40 -0.27 -0.62 16 20 C -0.51 -13.38 9.38 -34.44 -0.32 -13.70 16 21 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 22 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 24 Si 0.87 20.51 27.42 -169.99 -4.66 15.84 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.26 -5.97 6.21 56.52 0.35 -5.62 16 28 C 0.12 2.41 8.19 -8.51 -0.07 2.34 16 29 C -0.19 -2.84 6.83 -104.54 -0.71 -3.55 16 30 C 0.11 1.36 6.61 -4.23 -0.03 1.33 16 31 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.46 7.73 -51.93 -0.40 0.06 16 38 H 0.09 0.63 5.93 -51.93 -0.31 0.32 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 41 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 42 H 0.07 1.53 6.50 -51.93 -0.34 1.19 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.09 1.09 7.80 -51.93 -0.41 0.68 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.95 383.46 -11.79 -43.73 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.62 Total: 1.38 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.72 Total: -1.99 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.66 Total: -52.56 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.66 Total: 15.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.95 -11.79 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277141900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.039 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds