Wall clock time and date at job start Tue Mar 31 2020 16:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 115.56170 * 2 1 4 4 C 1.53001 * 117.49363 * 145.68575 * 2 1 3 5 5 C 1.53001 * 117.49458 * 214.30446 * 2 1 3 6 6 H 1.08998 * 117.51959 * 359.97438 * 5 2 1 7 7 C 1.53000 * 117.49611 * 145.02326 * 5 2 1 8 8 N 1.46900 * 109.47176 * 243.31509 * 7 5 2 9 9 C 1.48352 * 111.01106 * 54.88964 * 8 7 5 10 10 C 1.51072 * 105.64090 * 92.19675 * 9 8 7 11 11 N 1.34940 * 144.32948 * 197.17843 * 10 9 8 12 12 H 0.97005 * 124.88003 * 0.06261 * 11 10 9 13 13 N 1.28539 * 110.24082 * 180.02562 * 11 10 9 14 14 C 1.31937 * 110.05013 * 359.97438 * 13 11 10 15 15 C 1.47708 * 126.56628 * 180.02562 * 14 13 11 16 16 O 1.21565 * 120.00057 * 179.97438 * 15 14 13 17 17 N 1.34778 * 119.99713 * 359.97438 * 15 14 13 18 18 C 1.47061 * 136.06410 * 359.63142 * 17 15 14 19 19 C 1.53238 * 88.08845 * 207.20218 * 18 17 15 20 20 C 1.50693 * 114.32599 * 220.46896 * 19 18 17 21 21 H 1.08007 * 119.99734 * 93.75860 * 20 19 18 22 22 C 1.37877 * 120.00175 * 273.75375 * 20 19 18 23 23 N 1.31517 * 119.99938 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99691 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.46996 * 89.99906 * 24 22 20 26 26 H 1.48498 * 109.46704 * 209.99947 * 24 22 20 27 27 H 1.48496 * 109.47069 * 329.99722 * 24 22 20 28 28 C 1.47076 * 136.05111 * 180.02562 * 17 15 14 29 29 C 1.35375 * 108.59491 * 17.20678 * 10 9 8 30 30 C 1.48192 * 110.99946 * 169.18300 * 8 7 5 31 31 H 1.08997 * 109.47415 * 205.69295 * 1 2 3 32 32 H 1.09006 * 109.46762 * 325.69261 * 1 2 3 33 33 H 1.08999 * 109.46949 * 85.69089 * 1 2 3 34 34 H 1.08998 * 117.50198 * 0.02562 * 4 2 1 35 35 H 1.08998 * 117.51703 * 214.97056 * 4 2 1 36 36 H 1.09000 * 109.46707 * 123.31352 * 7 5 2 37 37 H 1.08999 * 109.46773 * 3.31732 * 7 5 2 38 38 H 1.08999 * 110.22177 * 333.14883 * 9 8 7 39 39 H 1.08994 * 110.26472 * 211.26919 * 9 8 7 40 40 H 1.09003 * 113.46643 * 321.93609 * 18 17 15 41 41 H 1.08993 * 113.46944 * 92.36914 * 18 17 15 42 42 H 1.09001 * 114.01798 * 87.71163 * 19 18 17 43 43 H 0.96995 * 119.99588 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.46252 * 267.62311 * 28 17 15 45 45 H 1.08992 * 113.46775 * 38.06620 * 28 17 15 46 46 H 1.09000 * 110.23400 * 148.70522 * 30 8 7 47 47 H 1.08997 * 110.23055 * 26.82439 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1211 -0.7649 6 1 1.6114 -1.8590 -1.2678 7 6 3.5490 -0.7762 -1.4714 8 7 3.3858 -0.9516 -2.9207 9 6 2.2371 -0.1606 -3.4263 10 6 2.8143 1.1687 -3.8529 11 7 2.5122 2.4486 -4.1556 12 1 1.6186 2.8257 -4.1423 13 7 3.5789 3.0965 -4.4631 14 6 4.6293 2.3021 -4.3840 15 6 6.0333 2.6697 -4.6588 16 8 6.9124 1.8375 -4.5475 17 7 6.3396 3.9277 -5.0330 18 6 5.5935 5.1712 -5.2777 19 6 6.7026 5.5847 -6.2508 20 6 7.0856 7.0401 -6.1732 21 1 7.9070 7.3495 -5.5438 22 6 6.3876 7.9767 -6.9057 23 7 6.7223 9.2468 -6.8383 24 14 4.9667 7.4416 -7.9938 25 1 3.7045 7.4764 -7.2123 26 1 4.8568 8.3631 -9.1531 27 1 5.2094 6.0600 -8.4810 28 6 7.5666 4.6592 -5.3832 29 6 4.1547 1.0343 -3.9869 30 6 4.5402 -0.3855 -3.6575 31 1 -0.3634 -0.9260 0.4455 32 1 -0.3633 0.8489 0.5793 33 1 -0.3633 0.0772 -1.0248 34 1 1.6111 -1.8587 1.2681 35 1 3.1716 -0.8756 1.2684 36 1 4.3391 -1.4356 -1.1122 37 1 3.8150 0.2592 -1.2583 38 1 1.5021 -0.0154 -2.6346 39 1 1.7785 -0.6629 -4.2779 40 1 4.6303 5.0112 -5.7623 41 1 5.5230 5.8147 -4.4009 42 1 6.5532 5.2299 -7.2706 43 1 6.2314 9.9056 -7.3540 44 1 8.0274 5.1650 -4.5347 45 1 8.2773 4.0649 -5.9572 46 1 4.7169 -0.9502 -4.5729 47 1 5.4311 -0.3981 -3.0295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277141900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:55 Heat of formation + Delta-G solvation = 111.374532 kcal Electronic energy + Delta-G solvation = -28082.789693 eV Core-core repulsion = 24269.340234 eV Total energy + Delta-G solvation = -3813.449458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.13591 -41.13718 -40.11116 -38.83154 -38.06298 -34.70137 -33.29244 -32.33601 -31.25464 -29.68095 -29.01718 -27.53673 -27.27753 -26.78880 -24.56805 -23.45766 -21.92798 -21.69279 -21.44309 -21.03848 -19.78666 -19.14768 -18.79859 -17.90097 -17.47288 -16.86241 -16.82452 -16.55795 -16.09842 -15.83001 -15.58788 -15.07896 -15.05034 -14.78602 -14.44825 -14.19735 -14.04411 -13.87700 -13.56636 -13.44780 -13.22412 -13.04306 -13.00418 -12.98930 -12.78009 -12.64003 -12.29960 -12.24099 -12.11686 -11.84469 -11.66963 -11.27715 -11.09130 -10.96072 -10.69462 -10.63537 -10.56651 -10.01679 -9.73428 -9.66782 -8.29530 -6.36683 0.35977 0.86616 1.38329 1.40718 1.49208 1.51011 1.85769 2.21300 2.35812 2.67156 2.84834 2.97437 3.00568 3.43756 3.58172 3.75962 3.87638 3.90302 4.02624 4.09599 4.21388 4.25394 4.32043 4.36266 4.43433 4.46753 4.56460 4.59062 4.64001 4.71133 4.73760 4.78965 4.80177 4.87018 4.90249 4.91475 4.97221 4.98400 5.12812 5.21185 5.30096 5.34202 5.43239 5.50346 5.58394 5.81311 6.00079 6.26641 6.62814 6.65832 6.71022 7.04541 7.30345 8.85790 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.002707 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.506783 B =10341.584764 C =10884.346639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.161 4.161 3 H 0.086 0.914 4 C -0.168 4.168 5 C -0.144 4.144 6 H 0.125 0.875 7 C 0.068 3.932 8 N -0.478 5.478 9 C 0.122 3.878 10 C -0.021 4.021 11 N -0.336 5.336 12 H 0.462 0.538 13 N -0.259 5.259 14 C -0.002 4.002 15 C 0.613 3.387 16 O -0.575 6.575 17 N -0.634 5.634 18 C 0.111 3.889 19 C -0.018 4.018 20 C -0.509 4.509 21 H 0.046 0.954 22 C 0.025 3.975 23 N -0.941 5.941 24 Si 0.935 3.065 25 H -0.261 1.261 26 H -0.286 1.286 27 H -0.249 1.249 28 C 0.119 3.881 29 C -0.221 4.221 30 C 0.115 3.885 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.023 0.977 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.269 0.731 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.021 -22.745 11.533 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 H 0.104 0.896 4 C -0.206 4.206 5 C -0.162 4.162 6 H 0.143 0.857 7 C -0.060 4.060 8 N -0.199 5.199 9 C -0.008 4.008 10 C -0.152 4.152 11 N -0.052 5.052 12 H 0.311 0.689 13 N -0.096 5.096 14 C -0.160 4.160 15 C 0.402 3.598 16 O -0.454 6.454 17 N -0.366 5.366 18 C -0.012 4.012 19 C -0.038 4.038 20 C -0.547 4.547 21 H 0.065 0.935 22 C -0.174 4.174 23 N -0.579 5.579 24 Si 0.759 3.241 25 H -0.186 1.186 26 H -0.212 1.212 27 H -0.173 1.173 28 C -0.003 4.003 29 C -0.233 4.233 30 C -0.013 4.013 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.967 -22.727 11.278 31.089 hybrid contribution -0.008 1.159 -0.102 1.164 sum -17.975 -21.568 11.176 30.219 Atomic orbital electron populations 1.21375 0.91497 1.02442 1.02473 1.22557 0.96291 0.93897 1.05206 0.89614 1.23188 1.02654 1.01360 0.93352 1.22317 0.97744 1.02154 0.93985 0.85676 1.22027 0.97742 0.99206 0.87011 1.65836 1.02084 1.47262 1.04708 1.21700 0.94451 0.82041 1.02639 1.23347 0.96474 0.90161 1.05205 1.42590 1.09305 1.05887 1.47392 0.68935 1.73920 0.92764 1.23616 1.19305 1.20990 0.92296 0.92463 1.10286 1.16814 0.86349 0.80509 0.76139 1.90705 1.49047 1.49986 1.55701 1.49721 1.13961 1.08012 1.64939 1.23475 0.97536 0.80995 0.99187 1.20782 0.93736 0.94226 0.95053 1.20882 1.16793 0.89952 1.27051 0.93538 1.25780 0.99656 0.94535 0.97455 1.70025 1.42564 1.02387 1.42973 0.85897 0.80100 0.79219 0.78930 1.18555 1.21224 1.17313 1.23074 0.88604 0.90580 0.98067 1.21669 0.95224 0.96984 1.09427 1.20985 0.94213 0.86347 0.99797 0.91698 0.92230 0.91394 0.87261 0.89246 0.89384 0.95831 0.86939 0.85454 0.91127 0.90187 0.91441 0.92238 0.89879 0.90914 0.87785 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.19 71.98 0.73 -0.24 16 2 C -0.16 -1.82 5.57 -10.79 -0.06 -1.88 16 3 H 0.09 1.25 8.03 -2.39 -0.02 1.23 16 4 C -0.17 -1.80 9.90 30.59 0.30 -1.49 16 5 C -0.14 -1.63 3.94 -10.79 -0.04 -1.67 16 6 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 7 C 0.07 1.08 5.15 86.30 0.44 1.53 16 8 N -0.48 -7.99 5.66 -896.93 -5.08 -13.07 16 9 C 0.12 1.61 6.41 85.39 0.55 2.16 16 10 C -0.02 -0.44 8.21 41.54 0.34 -0.10 16 11 N -0.34 -7.09 6.83 -47.68 -0.33 -7.41 16 12 H 0.46 5.73 8.96 -219.95 -1.97 3.75 16 13 N -0.26 -8.00 10.79 -48.39 -0.52 -8.53 16 14 C 0.00 -0.05 7.10 42.33 0.30 0.25 16 15 C 0.61 25.38 8.08 86.75 0.70 26.08 16 16 O -0.57 -26.09 17.70 -3.92 -0.07 -26.16 16 17 N -0.63 -26.33 3.69 -862.44 -3.18 -29.52 16 18 C 0.11 4.58 6.89 83.09 0.57 5.16 16 19 C -0.02 -0.83 2.98 -11.30 -0.03 -0.87 16 20 C -0.51 -27.36 9.38 25.60 0.24 -27.12 16 21 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 22 C 0.02 1.36 5.47 84.65 0.46 1.82 16 23 N -0.94 -55.98 13.96 21.45 0.30 -55.68 16 24 Si 0.93 41.80 27.42 68.60 1.88 43.68 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.25 -10.54 6.21 99.48 0.62 -9.92 16 28 C 0.12 4.95 8.19 83.17 0.68 5.63 16 29 C -0.22 -6.22 6.83 -19.81 -0.14 -6.35 16 30 C 0.12 2.68 6.61 85.33 0.56 3.24 16 31 H 0.06 0.44 7.90 -2.39 -0.02 0.42 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.90 8.05 -2.39 -0.02 0.88 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.02 0.47 7.73 -2.39 -0.02 0.46 16 38 H 0.11 1.07 5.93 -2.39 -0.01 1.05 16 39 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 2.80 7.51 -2.39 -0.02 2.78 16 41 H 0.08 3.35 8.10 -2.39 -0.02 3.33 16 42 H 0.07 3.05 6.50 -2.39 -0.02 3.04 16 43 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.08 3.42 8.10 -2.39 -0.02 3.40 16 45 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 47 H 0.07 1.86 7.80 -2.39 -0.02 1.84 16 Total: -1.00 -70.44 383.46 -2.45 -72.89 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -1.07 Total: 17.64 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.62 Total: 6.14 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -8.81 Total: -114.20 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.07 Total: -26.16 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.68 kcal Total: -70.44 -2.45 -72.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277141900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.261 kcal (2) G-P(sol) polarization free energy of solvation -70.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds