Wall clock time and date at job start Tue Mar 31 2020 17:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.54323 * 2 1 4 4 C 1.53066 * 117.51468 * 214.28023 * 2 1 3 5 5 C 1.52990 * 117.49926 * 145.66793 * 2 1 3 6 6 H 1.08999 * 117.50099 * 214.99989 * 5 2 1 7 7 C 1.52999 * 117.50121 * 0.02562 * 5 2 1 8 8 N 1.46902 * 109.47015 * 184.90822 * 7 5 2 9 9 C 1.48152 * 111.00335 * 290.12778 * 8 7 5 10 10 C 1.51057 * 105.62185 * 92.22636 * 9 8 7 11 11 N 1.34944 * 144.33031 * 197.19735 * 10 9 8 12 12 H 0.97004 * 124.88024 * 0.05453 * 11 10 9 13 13 N 1.28550 * 110.24082 * 180.02562 * 11 10 9 14 14 C 1.31928 * 110.04576 * 359.97438 * 13 11 10 15 15 C 1.47711 * 126.56099 * 179.97438 * 14 13 11 16 16 O 1.21571 * 119.99396 * 180.02562 * 15 14 13 17 17 N 1.34773 * 120.00045 * 0.02562 * 15 14 13 18 18 C 1.47583 * 134.49244 * 179.97438 * 17 15 14 19 19 C 1.53940 * 86.11617 * 155.36379 * 18 17 15 20 20 C 1.50702 * 113.74025 * 137.95239 * 19 18 17 21 21 H 1.08002 * 120.00299 * 1.92917 * 20 19 18 22 22 C 1.37884 * 119.99942 * 181.64476 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.47815 * 134.45820 * 359.87651 * 17 15 14 29 29 C 1.35372 * 108.59451 * 17.48342 * 10 9 8 30 30 C 1.48189 * 110.99958 * 44.53082 * 8 7 5 31 31 H 1.08998 * 109.47440 * 274.32428 * 1 2 3 32 32 H 1.09005 * 109.47545 * 34.33241 * 1 2 3 33 33 H 1.09009 * 109.46958 * 154.32887 * 1 2 3 34 34 H 1.08998 * 117.49704 * 145.03384 * 4 2 1 35 35 H 1.09005 * 117.51688 * 359.97438 * 4 2 1 36 36 H 1.09002 * 109.47016 * 64.91093 * 7 5 2 37 37 H 1.08997 * 109.47106 * 304.91269 * 7 5 2 38 38 H 1.09005 * 110.21591 * 333.18605 * 9 8 7 39 39 H 1.09003 * 110.28346 * 211.30384 * 9 8 7 40 40 H 1.09002 * 113.76762 * 41.06339 * 18 17 15 41 41 H 1.09002 * 113.87323 * 269.67799 * 18 17 15 42 42 H 1.08999 * 113.74141 * 269.15406 * 19 18 17 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 44 44 H 1.08996 * 113.77002 * 90.37316 * 28 17 15 45 45 H 1.08997 * 113.83175 * 318.91261 * 28 17 15 46 46 H 1.09004 * 110.23384 * 26.74107 * 30 8 7 47 47 H 1.09000 * 110.23143 * 148.61180 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2371 -1.1217 -0.7646 5 6 2.2364 -1.1206 0.7654 6 1 3.1713 -0.8746 1.2688 7 6 1.3588 -2.1559 1.4717 8 7 2.2083 -3.0739 2.2423 9 6 2.9938 -3.9514 1.3434 10 6 4.3070 -3.2379 1.1240 11 7 5.4012 -3.1729 0.3369 12 1 5.5631 -3.7368 -0.4357 13 7 6.1978 -2.2559 0.7576 14 6 5.6900 -1.6706 1.8253 15 6 6.3008 -0.5717 2.6007 16 8 5.7249 -0.1193 3.5710 17 7 7.4966 -0.0708 2.2324 18 6 8.3775 0.9924 2.7538 19 6 9.5275 0.2290 2.0723 20 6 10.5124 1.1224 1.3631 21 1 10.3883 2.1948 1.3940 22 6 11.5755 0.5709 0.6797 23 7 11.7267 -0.7350 0.6422 24 14 12.8006 1.6786 -0.1928 25 1 12.4094 3.0980 0.0001 26 1 14.1565 1.4582 0.3715 27 1 12.8103 1.3601 -1.6433 28 6 8.4528 -0.3674 1.1450 29 6 4.4553 -2.3001 2.0890 30 6 3.2486 -2.3314 2.9923 31 1 -0.3634 0.0775 1.0247 32 1 -0.3634 0.8486 -0.5796 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1723 -0.8760 -1.2677 35 1 1.6124 -1.8601 -1.2674 36 1 0.7939 -2.7202 0.7297 37 1 0.6683 -1.6481 2.1451 38 1 2.4728 -4.0819 0.3948 39 1 3.1649 -4.9192 1.8148 40 1 8.4467 1.0115 3.8414 41 1 8.1860 1.9749 2.3224 42 1 10.0086 -0.5066 2.7169 43 1 12.4744 -1.1230 0.1611 44 1 8.2822 0.2143 0.2391 45 1 8.5820 -1.4320 0.9503 46 1 2.9082 -1.3183 3.2064 47 1 3.4884 -2.8518 3.9196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277141912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:06 Heat of formation + Delta-G solvation = 133.940158 kcal Electronic energy + Delta-G solvation = -28794.498446 eV Core-core repulsion = 24982.027506 eV Total energy + Delta-G solvation = -3812.470939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.04038 -39.53210 -39.04968 -37.02701 -36.80437 -32.65530 -31.94475 -31.07242 -29.14465 -28.75133 -27.95365 -26.81677 -25.41286 -25.00628 -23.24997 -22.52750 -21.45657 -20.30894 -19.93613 -19.49180 -18.05633 -17.63601 -16.98756 -16.77439 -16.14431 -15.72060 -15.19811 -15.01692 -14.80992 -14.60397 -14.37716 -14.22534 -13.38281 -13.34571 -13.09214 -12.81234 -12.50513 -12.45015 -12.22606 -12.12190 -11.98400 -11.94203 -11.75226 -11.51626 -11.49568 -11.22460 -11.10584 -10.92608 -10.71575 -10.36324 -10.14597 -9.99191 -9.73107 -9.25437 -9.21699 -9.00532 -8.92370 -8.58247 -8.54826 -7.78590 -6.14503 -4.19666 1.79131 2.08315 2.62019 3.24277 3.32990 3.36611 3.49570 3.56723 3.76211 3.86670 4.16613 4.36078 4.41687 4.61811 4.65912 4.68771 4.79752 5.01489 5.08398 5.13108 5.16460 5.28846 5.35268 5.42294 5.46282 5.52931 5.56031 5.61053 5.70211 5.81051 5.81537 5.94364 6.07120 6.13884 6.15210 6.24409 6.29891 6.33470 6.41909 6.44630 6.66660 6.71361 6.81462 6.94132 7.05737 7.60127 7.83385 7.93205 8.21242 8.50320 8.81031 8.83498 9.46554 10.95169 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002937 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.104463 B = 9530.891242 C = 9742.972964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.150 4.150 3 H 0.101 0.899 4 C -0.173 4.173 5 C -0.192 4.192 6 H 0.122 0.878 7 C 0.073 3.927 8 N -0.487 5.487 9 C 0.124 3.876 10 C -0.046 4.046 11 N -0.358 5.358 12 H 0.442 0.558 13 N -0.234 5.234 14 C 0.032 3.968 15 C 0.604 3.396 16 O -0.557 6.557 17 N -0.625 5.625 18 C 0.105 3.895 19 C 0.031 3.969 20 C -0.517 4.517 21 H 0.063 0.937 22 C 0.067 3.933 23 N -0.885 5.885 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.284 1.284 28 C 0.118 3.882 29 C -0.191 4.191 30 C 0.112 3.888 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.262 0.738 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 -6.847 -3.004 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.169 4.169 3 H 0.119 0.881 4 C -0.210 4.210 5 C -0.211 4.211 6 H 0.140 0.860 7 C -0.055 4.055 8 N -0.207 5.207 9 C -0.006 4.006 10 C -0.176 4.176 11 N -0.070 5.070 12 H 0.286 0.714 13 N -0.069 5.069 14 C -0.129 4.129 15 C 0.391 3.609 16 O -0.436 6.436 17 N -0.358 5.358 18 C -0.017 4.017 19 C 0.011 3.989 20 C -0.556 4.556 21 H 0.082 0.918 22 C -0.136 4.136 23 N -0.522 5.522 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.210 1.210 28 C -0.004 4.004 29 C -0.202 4.202 30 C -0.017 4.017 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.582 -7.084 -2.807 21.947 hybrid contribution 0.902 0.648 -1.339 1.739 sum -19.680 -6.436 -4.146 21.117 Atomic orbital electron populations 1.21328 0.92854 1.01703 1.01832 1.22315 0.95178 0.94588 1.04821 0.88101 1.23058 1.02209 1.01672 0.94018 1.23529 1.02739 1.00486 0.94387 0.85995 1.22125 0.94747 0.92192 0.96481 1.65827 1.16762 1.17679 1.20446 1.21260 0.85556 0.96413 0.97411 1.22734 0.95481 1.03450 0.95904 1.42555 1.12611 1.27575 1.24220 0.71373 1.74098 1.17496 1.02131 1.13200 1.21333 0.94501 1.00763 0.96334 1.16645 0.79491 0.81240 0.83484 1.90720 1.62314 1.62236 1.28331 1.50400 1.16850 1.36303 1.32218 1.23533 0.87767 0.91428 0.98937 1.20543 0.90406 0.94706 0.93208 1.21007 1.09115 0.92976 1.32471 0.91836 1.25022 0.97435 0.95025 0.96132 1.69974 1.30573 1.09904 1.41780 0.86502 0.81065 0.80961 0.79288 1.19584 1.20917 1.20978 1.23711 0.84760 1.00923 0.91043 1.21240 0.98333 1.00054 1.00616 1.20999 0.85607 0.99769 0.95298 0.92060 0.92328 0.92664 0.89514 0.89121 0.90456 0.89479 0.90117 0.87961 0.91883 0.90648 0.91887 0.92793 0.91041 0.91059 0.89437 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.20 37.16 0.34 -0.59 16 2 C -0.15 -1.51 6.41 -90.59 -0.58 -2.09 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.17 -1.73 9.83 -26.70 -0.26 -2.00 16 5 C -0.19 -2.09 3.91 -90.63 -0.35 -2.44 16 6 H 0.12 1.75 4.52 -51.93 -0.23 1.52 16 7 C 0.07 0.65 4.72 -3.82 -0.02 0.63 16 8 N -0.49 -4.84 5.82 -235.03 -1.37 -6.21 16 9 C 0.12 1.09 6.52 -4.11 -0.03 1.07 16 10 C -0.05 -0.55 7.36 -82.07 -0.60 -1.15 16 11 N -0.36 -4.43 6.83 33.57 0.23 -4.20 16 12 H 0.44 3.82 8.96 -190.39 -1.71 2.11 16 13 N -0.23 -3.95 10.67 33.35 0.36 -3.60 16 14 C 0.03 0.58 7.06 -82.88 -0.58 -0.01 16 15 C 0.60 12.98 8.06 -12.39 -0.10 12.88 16 16 O -0.56 -12.91 17.65 5.30 0.09 -12.82 16 17 N -0.63 -13.66 3.61 -179.39 -0.65 -14.31 16 18 C 0.10 2.26 8.39 -2.97 -0.02 2.24 16 19 C 0.03 0.74 3.60 -90.84 -0.33 0.41 16 20 C -0.52 -13.42 8.77 -34.44 -0.30 -13.72 16 21 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 24 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.12 2.66 7.48 -2.83 -0.02 2.63 16 29 C -0.19 -2.84 4.60 -104.54 -0.48 -3.32 16 30 C 0.11 1.41 6.16 -4.23 -0.03 1.39 16 31 H 0.06 0.45 7.84 -51.93 -0.41 0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.38 7.90 -51.92 -0.41 -0.03 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.77 7.94 -51.93 -0.41 0.35 16 36 H 0.08 0.58 7.56 -51.93 -0.39 0.19 16 37 H 0.09 0.75 7.77 -51.93 -0.40 0.35 16 38 H 0.08 0.56 7.60 -51.93 -0.39 0.17 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 42 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.07 1.62 8.09 -51.93 -0.42 1.20 16 45 H 0.07 1.66 7.52 -51.93 -0.39 1.26 16 46 H 0.09 1.18 7.13 -51.93 -0.37 0.81 16 47 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -30.69 380.29 -11.83 -42.52 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.47 Total: 3.66 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.47 Total: -2.39 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.70 Total: -52.02 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.69 -11.83 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277141912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.460 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds