Wall clock time and date at job start Tue Mar 31 2020 17:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.54323 * 2 1 4 4 C 1.53066 * 117.51468 * 214.28023 * 2 1 3 5 5 C 1.52990 * 117.49926 * 145.66793 * 2 1 3 6 6 H 1.08999 * 117.50099 * 214.99989 * 5 2 1 7 7 C 1.52999 * 117.50121 * 0.02562 * 5 2 1 8 8 N 1.46902 * 109.47015 * 184.90822 * 7 5 2 9 9 C 1.48152 * 111.00335 * 290.12778 * 8 7 5 10 10 C 1.51057 * 105.62185 * 92.22636 * 9 8 7 11 11 N 1.34944 * 144.33031 * 197.19735 * 10 9 8 12 12 H 0.97004 * 124.88024 * 0.05453 * 11 10 9 13 13 N 1.28550 * 110.24082 * 180.02562 * 11 10 9 14 14 C 1.31928 * 110.04576 * 359.97438 * 13 11 10 15 15 C 1.47711 * 126.56099 * 179.97438 * 14 13 11 16 16 O 1.21571 * 119.99396 * 180.02562 * 15 14 13 17 17 N 1.34773 * 120.00045 * 0.02562 * 15 14 13 18 18 C 1.47583 * 134.49244 * 179.97438 * 17 15 14 19 19 C 1.53940 * 86.11617 * 155.36379 * 18 17 15 20 20 C 1.50702 * 113.74025 * 137.95239 * 19 18 17 21 21 H 1.08002 * 120.00299 * 1.92917 * 20 19 18 22 22 C 1.37884 * 119.99942 * 181.64476 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.47815 * 134.45820 * 359.87651 * 17 15 14 29 29 C 1.35372 * 108.59451 * 17.48342 * 10 9 8 30 30 C 1.48189 * 110.99958 * 44.53082 * 8 7 5 31 31 H 1.08998 * 109.47440 * 274.32428 * 1 2 3 32 32 H 1.09005 * 109.47545 * 34.33241 * 1 2 3 33 33 H 1.09009 * 109.46958 * 154.32887 * 1 2 3 34 34 H 1.08998 * 117.49704 * 145.03384 * 4 2 1 35 35 H 1.09005 * 117.51688 * 359.97438 * 4 2 1 36 36 H 1.09002 * 109.47016 * 64.91093 * 7 5 2 37 37 H 1.08997 * 109.47106 * 304.91269 * 7 5 2 38 38 H 1.09005 * 110.21591 * 333.18605 * 9 8 7 39 39 H 1.09003 * 110.28346 * 211.30384 * 9 8 7 40 40 H 1.09002 * 113.76762 * 41.06339 * 18 17 15 41 41 H 1.09002 * 113.87323 * 269.67799 * 18 17 15 42 42 H 1.08999 * 113.74141 * 269.15406 * 19 18 17 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 44 44 H 1.08996 * 113.77002 * 90.37316 * 28 17 15 45 45 H 1.08997 * 113.83175 * 318.91261 * 28 17 15 46 46 H 1.09004 * 110.23384 * 26.74107 * 30 8 7 47 47 H 1.09000 * 110.23143 * 148.61180 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2371 -1.1217 -0.7646 5 6 2.2364 -1.1206 0.7654 6 1 3.1713 -0.8746 1.2688 7 6 1.3588 -2.1559 1.4717 8 7 2.2083 -3.0739 2.2423 9 6 2.9938 -3.9514 1.3434 10 6 4.3070 -3.2379 1.1240 11 7 5.4012 -3.1729 0.3369 12 1 5.5631 -3.7368 -0.4357 13 7 6.1978 -2.2559 0.7576 14 6 5.6900 -1.6706 1.8253 15 6 6.3008 -0.5717 2.6007 16 8 5.7249 -0.1193 3.5710 17 7 7.4966 -0.0708 2.2324 18 6 8.3775 0.9924 2.7538 19 6 9.5275 0.2290 2.0723 20 6 10.5124 1.1224 1.3631 21 1 10.3883 2.1948 1.3940 22 6 11.5755 0.5709 0.6797 23 7 11.7267 -0.7350 0.6422 24 14 12.8006 1.6786 -0.1928 25 1 12.4094 3.0980 0.0001 26 1 14.1565 1.4582 0.3715 27 1 12.8103 1.3601 -1.6433 28 6 8.4528 -0.3674 1.1450 29 6 4.4553 -2.3001 2.0890 30 6 3.2486 -2.3314 2.9923 31 1 -0.3634 0.0775 1.0247 32 1 -0.3634 0.8486 -0.5796 33 1 -0.3633 -0.9263 -0.4452 34 1 3.1723 -0.8760 -1.2677 35 1 1.6124 -1.8601 -1.2674 36 1 0.7939 -2.7202 0.7297 37 1 0.6683 -1.6481 2.1451 38 1 2.4728 -4.0819 0.3948 39 1 3.1649 -4.9192 1.8148 40 1 8.4467 1.0115 3.8414 41 1 8.1860 1.9749 2.3224 42 1 10.0086 -0.5066 2.7169 43 1 12.4744 -1.1230 0.1611 44 1 8.2822 0.2143 0.2391 45 1 8.5820 -1.4320 0.9503 46 1 2.9082 -1.3183 3.2064 47 1 3.4884 -2.8518 3.9196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277141912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:05 Heat of formation + Delta-G solvation = 113.195327 kcal Electronic energy + Delta-G solvation = -28795.398009 eV Core-core repulsion = 24982.027506 eV Total energy + Delta-G solvation = -3813.370503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.15656 -40.89169 -40.32975 -38.60606 -37.85228 -34.65324 -33.20449 -32.05153 -30.82354 -29.43989 -28.95786 -27.70667 -27.23636 -26.87476 -24.64179 -23.52574 -22.24065 -21.78256 -21.32745 -20.28669 -19.66715 -18.76547 -18.68277 -17.88535 -17.75824 -16.86337 -16.74800 -16.51485 -16.13322 -15.89841 -15.60101 -15.15127 -14.90068 -14.37442 -14.17032 -13.99535 -13.96210 -13.56201 -13.34222 -13.24065 -13.15644 -13.06021 -12.97418 -12.81866 -12.66496 -12.63513 -12.59653 -12.29877 -12.24401 -12.10068 -11.55131 -11.15246 -10.96192 -10.86951 -10.77187 -10.57073 -10.45803 -9.83710 -9.62332 -9.53855 -8.17282 -6.28898 0.45183 0.96691 1.44369 1.47134 1.58111 1.60153 1.95083 2.28452 2.45102 2.72330 2.91847 3.06329 3.13351 3.51161 3.65487 3.72150 3.86230 3.92702 4.05869 4.29101 4.30541 4.32130 4.40181 4.40513 4.47585 4.55244 4.61187 4.62385 4.69795 4.77811 4.81759 4.82595 4.87239 4.90561 4.92681 5.00585 5.02137 5.05899 5.17089 5.21395 5.28426 5.41474 5.56943 5.57105 5.79772 5.87827 6.08641 6.20468 6.72138 6.74709 6.79157 7.12620 7.40782 8.92889 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002937 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.104463 B = 9530.891242 C = 9742.972964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.155 4.155 3 H 0.078 0.922 4 C -0.164 4.164 5 C -0.197 4.197 6 H 0.084 0.916 7 C 0.077 3.923 8 N -0.478 5.478 9 C 0.125 3.875 10 C -0.016 4.016 11 N -0.338 5.338 12 H 0.460 0.540 13 N -0.260 5.260 14 C -0.005 4.005 15 C 0.600 3.400 16 O -0.582 6.582 17 N -0.630 5.630 18 C 0.111 3.889 19 C 0.023 3.977 20 C -0.530 4.530 21 H 0.067 0.933 22 C 0.020 3.980 23 N -0.918 5.918 24 Si 0.960 3.040 25 H -0.264 1.264 26 H -0.282 1.282 27 H -0.280 1.280 28 C 0.137 3.863 29 C -0.212 4.212 30 C 0.117 3.883 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.023 -8.148 -4.496 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 H 0.096 0.904 4 C -0.201 4.201 5 C -0.216 4.216 6 H 0.102 0.898 7 C -0.051 4.051 8 N -0.197 5.197 9 C -0.005 4.005 10 C -0.147 4.147 11 N -0.052 5.052 12 H 0.308 0.692 13 N -0.097 5.097 14 C -0.164 4.164 15 C 0.389 3.611 16 O -0.463 6.463 17 N -0.363 5.363 18 C -0.011 4.011 19 C 0.004 3.996 20 C -0.568 4.568 21 H 0.085 0.915 22 C -0.181 4.181 23 N -0.556 5.556 24 Si 0.786 3.214 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.206 1.206 28 C 0.015 3.985 29 C -0.223 4.223 30 C -0.012 4.012 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.859 -8.384 -4.306 24.726 hybrid contribution 1.555 1.029 -0.870 2.058 sum -21.304 -7.355 -5.177 23.125 Atomic orbital electron populations 1.21317 0.90589 1.02819 1.02394 1.22374 0.96845 0.93528 1.04613 0.90356 1.23068 1.01631 1.02101 0.93335 1.23379 1.01779 1.01702 0.94747 0.89815 1.22225 0.94214 0.91804 0.96884 1.65852 1.15745 1.17355 1.20789 1.21616 0.83514 0.96331 0.98990 1.23271 0.95638 1.02028 0.93765 1.42579 1.12089 1.26303 1.24265 0.69221 1.73983 1.18934 1.03518 1.13299 1.20999 0.96373 1.01378 0.97613 1.17125 0.78962 0.81670 0.83361 1.90678 1.62810 1.63304 1.29493 1.50376 1.17348 1.36539 1.32027 1.23447 0.86682 0.91727 0.99217 1.20431 0.91025 0.94588 0.93554 1.21290 1.09672 0.93335 1.32487 0.91492 1.25789 0.99183 0.96261 0.96832 1.70086 1.31316 1.11502 1.42693 0.85469 0.78537 0.79385 0.78041 1.18793 1.20763 1.20607 1.23354 0.84372 0.99999 0.90771 1.21482 0.97897 1.00564 1.02391 1.20920 0.85595 0.99291 0.95415 0.91651 0.91952 0.90920 0.91712 0.86421 0.87594 0.89084 0.86798 0.85656 0.91305 0.89549 0.94739 0.92684 0.91296 0.92053 0.91092 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.20 71.98 0.66 -0.82 16 2 C -0.15 -2.96 6.41 -10.78 -0.07 -3.03 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.16 -2.99 9.83 30.62 0.30 -2.69 16 5 C -0.20 -4.02 3.91 -10.80 -0.04 -4.07 16 6 H 0.08 2.46 4.52 -2.39 -0.01 2.45 16 7 C 0.08 1.13 4.72 86.30 0.41 1.54 16 8 N -0.48 -8.11 5.82 -897.50 -5.23 -13.34 16 9 C 0.13 1.71 6.52 85.43 0.56 2.26 16 10 C -0.02 -0.36 7.36 41.53 0.31 -0.05 16 11 N -0.34 -7.94 6.83 -47.69 -0.33 -8.27 16 12 H 0.46 7.00 8.96 -219.95 -1.97 5.03 16 13 N -0.26 -8.92 10.67 -48.39 -0.52 -9.43 16 14 C 0.00 -0.19 7.06 42.33 0.30 0.11 16 15 C 0.60 26.95 8.06 86.75 0.70 27.65 16 16 O -0.58 -28.23 17.65 -3.94 -0.07 -28.30 16 17 N -0.63 -28.72 3.61 -839.73 -3.03 -31.75 16 18 C 0.11 4.94 8.39 86.48 0.73 5.67 16 19 C 0.02 1.17 3.60 -10.88 -0.04 1.13 16 20 C -0.53 -27.92 8.77 25.60 0.22 -27.69 16 21 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 22 C 0.02 1.04 5.46 84.66 0.46 1.50 16 23 N -0.92 -51.62 13.29 21.45 0.28 -51.33 16 24 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 28 C 0.14 6.45 7.48 86.45 0.65 7.10 16 29 C -0.21 -6.29 4.60 -19.81 -0.09 -6.38 16 30 C 0.12 2.90 6.16 85.33 0.53 3.42 16 31 H 0.06 0.80 7.84 -2.39 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.70 7.90 -2.38 -0.02 0.68 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.50 7.94 -2.38 -0.02 1.48 16 36 H 0.11 1.03 7.56 -2.39 -0.02 1.01 16 37 H 0.09 1.31 7.77 -2.39 -0.02 1.30 16 38 H 0.11 0.92 7.60 -2.38 -0.02 0.90 16 39 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 3.63 8.09 -2.39 -0.02 3.61 16 42 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.26 14.06 8.31 -92.70 -0.77 13.28 16 44 H 0.07 3.24 8.09 -2.39 -0.02 3.22 16 45 H 0.06 2.98 7.52 -2.39 -0.02 2.96 16 46 H 0.07 1.98 7.13 -2.38 -0.02 1.96 16 47 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -69.26 380.29 -2.26 -71.52 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.98 Total: 21.39 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.57 Total: 5.64 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -8.82 Total: -114.13 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.07 Total: -28.30 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.26 -2.26 -71.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277141912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.714 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds