Wall clock time and date at job start Tue Mar 31 2020 15:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53117 * 109.52206 * 177.12089 * 3 2 1 5 5 C 1.53036 * 109.27984 * 182.44261 * 4 3 2 6 6 N 1.46842 * 109.52181 * 59.17629 * 5 4 3 7 7 C 1.38583 * 110.99886 * 174.16390 * 6 5 4 8 8 N 1.31225 * 126.47050 * 35.88685 * 7 6 5 9 9 N 1.28525 * 109.85531 * 179.82466 * 8 7 6 10 10 C 1.30296 * 110.05861 * 0.45334 * 9 8 7 11 11 C 1.50695 * 126.35097 * 179.75874 * 10 9 8 12 12 C 1.52998 * 109.47413 * 274.16288 * 11 10 9 13 13 H 1.08995 * 109.47299 * 55.56587 * 12 11 10 14 14 O 1.42900 * 109.47050 * 295.56866 * 12 11 10 15 15 C 1.50701 * 109.47074 * 175.56696 * 12 11 10 16 16 H 1.07992 * 120.00332 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99632 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00466 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99656 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46832 * 90.00329 * 19 17 15 21 21 H 1.48502 * 109.47032 * 209.99888 * 19 17 15 22 22 H 1.48493 * 109.47285 * 330.00164 * 19 17 15 23 23 N 1.36454 * 126.47388 * 216.20889 * 7 6 5 24 24 C 1.46503 * 127.13516 * 0.02562 * 23 7 6 25 25 C 1.50693 * 109.47274 * 267.57990 * 24 23 7 26 26 C 1.31003 * 119.99923 * 124.70101 * 25 24 23 27 27 C 1.46848 * 111.20020 * 298.25854 * 6 5 4 28 28 C 1.53032 * 109.52378 * 61.74583 * 27 6 5 29 29 H 4.44837 * 5.63100 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.57403 * 297.27880 * 3 2 1 31 31 H 1.09000 * 109.50047 * 62.49605 * 4 3 2 32 32 H 1.09001 * 109.50128 * 302.38489 * 4 3 2 33 33 H 1.08997 * 109.45772 * 299.16446 * 5 4 3 34 34 H 1.08997 * 109.46114 * 179.19289 * 5 4 3 35 35 H 1.08999 * 109.46849 * 34.16254 * 11 10 9 36 36 H 1.09004 * 109.47241 * 154.15807 * 11 10 9 37 37 H 0.96705 * 114.00231 * 298.74795 * 14 12 11 38 38 H 0.96993 * 120.00460 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47188 * 27.58287 * 24 23 7 40 40 H 1.08997 * 109.46697 * 147.58003 * 24 23 7 41 41 H 1.07999 * 120.00564 * 304.70139 * 25 24 23 42 42 H 1.08001 * 120.00255 * 0.02562 * 26 25 24 43 43 H 1.08005 * 120.00015 * 179.97438 * 26 25 24 44 44 H 1.09007 * 109.46200 * 181.76279 * 27 6 5 45 45 H 1.08997 * 109.45936 * 301.72554 * 27 6 5 46 46 H 1.09003 * 109.50589 * 60.75711 * 28 27 6 47 47 H 1.08997 * 109.50444 * 180.88398 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1570 1.4422 -0.0725 5 6 4.6862 1.4338 -0.1337 6 7 5.1259 0.6796 -1.3144 7 6 6.5001 0.7619 -1.4728 8 7 7.3954 0.7923 -0.5139 9 7 8.5745 0.8673 -1.0197 10 6 8.5017 0.8986 -2.3202 11 6 9.6617 0.9898 -3.2779 12 6 10.0402 2.4581 -3.4821 13 1 10.2475 2.9177 -2.5158 14 8 8.9585 3.1454 -4.1141 15 6 11.2673 2.5441 -4.3528 16 1 11.7305 1.6419 -4.7237 17 6 11.7978 3.7749 -4.6766 18 7 11.2334 4.8737 -4.2253 19 14 13.3184 3.8815 -5.7565 20 1 12.9087 3.9604 -7.1817 21 1 14.0965 5.0943 -5.3973 22 1 14.1585 2.6748 -5.5490 23 7 7.1776 0.8327 -2.6552 24 6 6.6050 0.8377 -4.0037 25 6 6.5436 -0.5735 -4.5286 26 6 5.4045 -1.0683 -4.9455 27 6 4.6871 -0.7200 -1.2443 28 6 3.1581 -0.7759 -1.2163 29 1 -1.0503 -0.0004 0.0002 30 1 3.0114 -0.4699 0.9128 31 1 2.8312 1.9887 0.8125 32 1 2.7597 1.9246 -0.9655 33 1 5.0829 0.9636 0.7661 34 1 5.0526 2.4582 -0.1998 35 1 10.5144 0.4484 -2.8682 36 1 9.3784 0.5511 -4.2347 37 1 8.7315 2.8015 -4.9890 38 1 11.6064 5.7395 -4.4535 39 1 5.5994 1.2569 -3.9699 40 1 7.2291 1.4430 -4.6610 41 1 7.4386 -1.1771 -4.5611 42 1 4.5095 -0.4646 -4.9134 43 1 5.3605 -2.0796 -5.3221 44 1 5.0544 -1.2600 -2.1171 45 1 5.0840 -1.1800 -0.3393 46 1 2.7608 -0.3283 -2.1274 47 1 2.8330 -1.8140 -1.1484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340318055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:59 Heat of formation + Delta-G solvation = 103.763141 kcal Electronic energy + Delta-G solvation = -28673.734945 eV Core-core repulsion = 24859.955432 eV Total energy + Delta-G solvation = -3813.779513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58040 -39.36057 -36.37897 -35.86288 -35.11673 -32.63748 -32.20056 -32.04651 -31.21032 -30.81228 -27.98657 -26.69301 -25.49726 -24.91740 -23.47281 -21.92123 -21.29546 -20.57576 -19.98727 -19.57877 -18.42454 -17.49854 -16.98448 -16.20496 -16.05755 -15.16072 -15.06690 -14.82420 -14.66665 -14.50436 -14.36682 -14.07841 -13.91945 -13.66957 -13.51212 -13.07876 -12.71131 -12.58052 -12.36275 -11.69341 -11.61991 -11.54044 -11.42644 -11.41324 -11.34604 -11.19436 -11.04173 -10.87883 -10.77702 -10.31139 -10.25872 -10.17453 -10.13037 -9.80752 -9.70236 -9.34372 -8.98792 -8.65034 -8.49051 -8.00851 -6.06280 -4.26154 1.84940 2.14940 2.55261 2.58564 2.68452 3.24656 3.29847 3.32823 3.35661 3.77809 3.98851 4.34123 4.50369 4.60542 4.66717 4.76478 4.83743 4.92393 4.99300 5.11938 5.12541 5.18539 5.21377 5.29651 5.38404 5.47677 5.52604 5.57018 5.63105 5.65282 5.68021 5.82152 5.83709 5.85229 6.09098 6.13229 6.23870 6.27641 6.34812 6.35978 6.50647 6.68381 6.70906 6.94626 7.35902 7.50264 7.64959 7.77245 8.06178 8.75917 9.20762 9.24060 9.50002 10.97772 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002778 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.937606 B =10075.682698 C =10494.454424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.016 3.984 4 C -0.106 4.106 5 C 0.071 3.929 6 N -0.456 5.456 7 C 0.327 3.673 8 N -0.317 5.317 9 N -0.299 5.299 10 C 0.224 3.776 11 C -0.064 4.064 12 C 0.238 3.762 13 H 0.065 0.935 14 O -0.562 6.562 15 C -0.574 4.574 16 H 0.059 0.941 17 C 0.080 3.920 18 N -0.856 5.856 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 N -0.456 5.456 24 C 0.140 3.860 25 C -0.173 4.173 26 C -0.167 4.167 27 C 0.063 3.937 28 C -0.103 4.103 29 H 0.216 0.784 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.339 0.661 38 H 0.262 0.738 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.453 -12.086 2.094 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.002 4.002 4 C -0.144 4.144 5 C -0.056 4.056 6 N -0.182 5.182 7 C -0.030 4.030 8 N -0.161 5.161 9 N -0.139 5.139 10 C -0.043 4.043 11 C -0.104 4.104 12 C 0.179 3.821 13 H 0.083 0.917 14 O -0.364 6.364 15 C -0.612 4.612 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.491 5.491 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 N -0.149 5.149 24 C 0.017 3.983 25 C -0.192 4.192 26 C -0.205 4.205 27 C -0.064 4.064 28 C -0.141 4.141 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.183 0.817 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.058 -11.310 3.669 22.464 hybrid contribution 0.418 -0.512 -1.814 1.931 sum -18.641 -11.822 1.855 22.151 Atomic orbital electron populations 1.24883 0.95882 1.00957 1.01220 1.22993 0.94126 1.00230 1.00121 1.18425 0.84489 0.97506 0.99783 1.21657 0.94305 0.95019 1.03427 1.22049 0.94425 0.98974 0.90152 1.58496 1.04275 1.13317 1.42079 1.22117 0.90708 1.06827 0.83321 1.74481 0.95636 1.20607 1.25354 1.74011 1.14594 1.20041 1.05239 1.25296 0.84307 1.00497 0.94206 1.21219 0.90987 1.04218 0.93997 1.19416 0.84898 0.82901 0.94881 0.91722 1.86659 1.54499 1.62520 1.32748 1.21561 1.12819 0.92841 1.33973 0.92254 1.25042 0.96501 0.95766 0.95337 1.70079 1.38943 0.97559 1.42531 0.86633 0.83057 0.77787 0.80674 1.20553 1.21087 1.19708 1.46137 1.06928 1.54790 1.07000 1.20930 1.01226 0.95658 0.80488 1.23205 0.99300 0.96642 1.00090 1.23907 0.96968 1.00577 0.99030 1.22190 0.95231 0.86887 1.02122 1.21606 0.93935 1.00448 0.98130 0.76734 0.88966 0.90360 0.90428 0.92380 0.89642 0.88590 0.91072 0.81702 0.92855 0.88078 0.87179 0.86802 0.88036 0.88001 0.90108 0.93283 0.90376 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.17 -1.60 12.57 -37.12 -0.47 -2.07 16 3 C 0.02 0.14 2.63 -93.28 -0.25 -0.11 16 4 C -0.11 -0.97 5.33 -26.65 -0.14 -1.11 16 5 C 0.07 0.84 5.09 -3.84 -0.02 0.82 16 6 N -0.46 -5.86 4.67 -174.55 -0.82 -6.68 16 7 C 0.33 5.47 6.71 -318.86 -2.14 3.33 16 8 N -0.32 -6.31 11.69 30.32 0.35 -5.95 16 9 N -0.30 -6.52 12.18 32.99 0.40 -6.12 16 10 C 0.22 4.40 7.08 -154.01 -1.09 3.31 16 11 C -0.06 -1.25 5.14 -27.89 -0.14 -1.40 16 12 C 0.24 5.79 2.82 -27.88 -0.08 5.71 16 13 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 14 O -0.56 -13.52 11.94 -35.23 -0.42 -13.94 16 15 C -0.57 -14.99 8.75 -34.44 -0.30 -15.29 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 18 N -0.86 -24.86 12.84 55.43 0.71 -24.15 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 N -0.46 -7.57 2.79 -115.37 -0.32 -7.89 16 24 C 0.14 1.81 6.25 -5.20 -0.03 1.78 16 25 C -0.17 -1.86 9.85 -36.03 -0.35 -2.22 16 26 C -0.17 -1.42 14.13 29.01 0.41 -1.01 16 27 C 0.06 0.66 5.39 -3.84 -0.02 0.64 16 28 C -0.10 -0.85 5.33 -26.65 -0.14 -1.00 16 29 H 0.22 1.02 7.80 -54.08 -0.42 0.60 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.07 1.21 7.78 -51.93 -0.40 0.81 16 37 H 0.34 6.99 7.96 45.56 0.36 7.35 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.10 1.21 7.79 -51.93 -0.40 0.81 16 40 H 0.11 1.48 6.20 -51.93 -0.32 1.16 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 43 H 0.10 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -32.85 395.43 -10.07 -42.92 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.62 Total: 7.96 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -4.30 Total: -7.66 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.33 Total: -50.80 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.42 Total: -13.94 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.85 -10.07 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340318055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.682 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds