Wall clock time and date at job start Tue Mar 31 2020 15:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.53117 * 109.52206 * 177.12089 * 3 2 1 5 5 C 1.53036 * 109.27984 * 182.44261 * 4 3 2 6 6 N 1.46842 * 109.52181 * 59.17629 * 5 4 3 7 7 C 1.38583 * 110.99886 * 174.16390 * 6 5 4 8 8 N 1.31225 * 126.47050 * 35.88685 * 7 6 5 9 9 N 1.28525 * 109.85531 * 179.82466 * 8 7 6 10 10 C 1.30296 * 110.05861 * 0.45334 * 9 8 7 11 11 C 1.50695 * 126.35097 * 179.75874 * 10 9 8 12 12 C 1.52998 * 109.47413 * 274.16288 * 11 10 9 13 13 H 1.08995 * 109.47299 * 55.56587 * 12 11 10 14 14 O 1.42900 * 109.47050 * 295.56866 * 12 11 10 15 15 C 1.50701 * 109.47074 * 175.56696 * 12 11 10 16 16 H 1.07992 * 120.00332 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99632 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00466 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99656 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46832 * 90.00329 * 19 17 15 21 21 H 1.48502 * 109.47032 * 209.99888 * 19 17 15 22 22 H 1.48493 * 109.47285 * 330.00164 * 19 17 15 23 23 N 1.36454 * 126.47388 * 216.20889 * 7 6 5 24 24 C 1.46503 * 127.13516 * 0.02562 * 23 7 6 25 25 C 1.50693 * 109.47274 * 267.57990 * 24 23 7 26 26 C 1.31003 * 119.99923 * 124.70101 * 25 24 23 27 27 C 1.46848 * 111.20020 * 298.25854 * 6 5 4 28 28 C 1.53032 * 109.52378 * 61.74583 * 27 6 5 29 29 H 4.44837 * 5.63100 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.57403 * 297.27880 * 3 2 1 31 31 H 1.09000 * 109.50047 * 62.49605 * 4 3 2 32 32 H 1.09001 * 109.50128 * 302.38489 * 4 3 2 33 33 H 1.08997 * 109.45772 * 299.16446 * 5 4 3 34 34 H 1.08997 * 109.46114 * 179.19289 * 5 4 3 35 35 H 1.08999 * 109.46849 * 34.16254 * 11 10 9 36 36 H 1.09004 * 109.47241 * 154.15807 * 11 10 9 37 37 H 0.96705 * 114.00231 * 298.74795 * 14 12 11 38 38 H 0.96993 * 120.00460 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47188 * 27.58287 * 24 23 7 40 40 H 1.08997 * 109.46697 * 147.58003 * 24 23 7 41 41 H 1.07999 * 120.00564 * 304.70139 * 25 24 23 42 42 H 1.08001 * 120.00255 * 0.02562 * 26 25 24 43 43 H 1.08005 * 120.00015 * 179.97438 * 26 25 24 44 44 H 1.09007 * 109.46200 * 181.76279 * 27 6 5 45 45 H 1.08997 * 109.45936 * 301.72554 * 27 6 5 46 46 H 1.09003 * 109.50589 * 60.75711 * 28 27 6 47 47 H 1.08997 * 109.50444 * 180.88398 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1570 1.4422 -0.0725 5 6 4.6862 1.4338 -0.1337 6 7 5.1259 0.6796 -1.3144 7 6 6.5001 0.7619 -1.4728 8 7 7.3954 0.7923 -0.5139 9 7 8.5745 0.8673 -1.0197 10 6 8.5017 0.8986 -2.3202 11 6 9.6617 0.9898 -3.2779 12 6 10.0402 2.4581 -3.4821 13 1 10.2475 2.9177 -2.5158 14 8 8.9585 3.1454 -4.1141 15 6 11.2673 2.5441 -4.3528 16 1 11.7305 1.6419 -4.7237 17 6 11.7978 3.7749 -4.6766 18 7 11.2334 4.8737 -4.2253 19 14 13.3184 3.8815 -5.7565 20 1 12.9087 3.9604 -7.1817 21 1 14.0965 5.0943 -5.3973 22 1 14.1585 2.6748 -5.5490 23 7 7.1776 0.8327 -2.6552 24 6 6.6050 0.8377 -4.0037 25 6 6.5436 -0.5735 -4.5286 26 6 5.4045 -1.0683 -4.9455 27 6 4.6871 -0.7200 -1.2443 28 6 3.1581 -0.7759 -1.2163 29 1 -1.0503 -0.0004 0.0002 30 1 3.0114 -0.4699 0.9128 31 1 2.8312 1.9887 0.8125 32 1 2.7597 1.9246 -0.9655 33 1 5.0829 0.9636 0.7661 34 1 5.0526 2.4582 -0.1998 35 1 10.5144 0.4484 -2.8682 36 1 9.3784 0.5511 -4.2347 37 1 8.7315 2.8015 -4.9890 38 1 11.6064 5.7395 -4.4535 39 1 5.5994 1.2569 -3.9699 40 1 7.2291 1.4430 -4.6610 41 1 7.4386 -1.1771 -4.5611 42 1 4.5095 -0.4646 -4.9134 43 1 5.3605 -2.0796 -5.3221 44 1 5.0544 -1.2600 -2.1171 45 1 5.0840 -1.1800 -0.3393 46 1 2.7608 -0.3283 -2.1274 47 1 2.8330 -1.8140 -1.1484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340318055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:58 Heat of formation + Delta-G solvation = 84.622341 kcal Electronic energy + Delta-G solvation = -28674.564953 eV Core-core repulsion = 24859.955432 eV Total energy + Delta-G solvation = -3814.609520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.98476 -40.28338 -38.12330 -37.05637 -36.03249 -34.26898 -33.74301 -33.15856 -32.06547 -32.02337 -29.57529 -27.80395 -27.19269 -25.97237 -24.35819 -23.62054 -22.44934 -21.85512 -20.91927 -20.74064 -19.20632 -19.02903 -18.39175 -17.49128 -17.23484 -16.68395 -16.37595 -16.01696 -15.95428 -15.74535 -15.47802 -15.25441 -14.98661 -14.79301 -14.71418 -14.49564 -14.23118 -13.46476 -13.38473 -13.27283 -12.98450 -12.82368 -12.62744 -12.51169 -12.46535 -12.39443 -12.28208 -12.19521 -12.14180 -12.02061 -11.54568 -11.27786 -10.99430 -10.95210 -10.92742 -10.72144 -10.56576 -10.47855 -10.11466 -9.50421 -8.13015 -6.39613 0.77077 0.95922 1.43114 1.45128 1.55368 1.59117 1.80906 1.92486 1.96685 2.40775 2.68621 3.13513 3.35419 3.48581 3.66790 3.73109 3.82470 3.87959 3.98197 4.09681 4.12149 4.18223 4.25920 4.29591 4.37310 4.47601 4.51721 4.54385 4.64427 4.68045 4.73979 4.79121 4.85349 4.90297 4.96888 5.01498 5.11296 5.15610 5.24130 5.33053 5.55097 5.60735 5.62640 5.68749 5.71798 5.72980 6.02589 6.24955 6.72497 6.75799 7.32874 7.50902 7.74764 8.91691 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.002778 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.937606 B =10075.682698 C =10494.454424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.207 4.207 3 C 0.019 3.981 4 C -0.095 4.095 5 C 0.072 3.928 6 N -0.450 5.450 7 C 0.342 3.658 8 N -0.353 5.353 9 N -0.340 5.340 10 C 0.211 3.789 11 C -0.046 4.046 12 C 0.244 3.756 13 H 0.010 0.990 14 O -0.575 6.575 15 C -0.581 4.581 16 H 0.072 0.928 17 C 0.025 3.975 18 N -0.902 5.902 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.262 1.262 23 N -0.451 5.451 24 C 0.136 3.864 25 C -0.198 4.198 26 C -0.135 4.135 27 C 0.065 3.935 28 C -0.092 4.092 29 H 0.243 0.757 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.356 0.644 38 H 0.260 0.740 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.082 0.918 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.684 -13.991 0.346 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.207 4.207 3 C 0.001 3.999 4 C -0.132 4.132 5 C -0.055 4.055 6 N -0.176 5.176 7 C -0.015 4.015 8 N -0.197 5.197 9 N -0.179 5.179 10 C -0.058 4.058 11 C -0.086 4.086 12 C 0.185 3.815 13 H 0.028 0.972 14 O -0.379 6.379 15 C -0.618 4.618 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.187 1.187 23 N -0.143 5.143 24 C 0.015 3.985 25 C -0.217 4.217 26 C -0.173 4.173 27 C -0.062 4.062 28 C -0.130 4.130 29 H 0.259 0.741 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.306 -13.245 1.896 25.159 hybrid contribution 0.919 0.060 -1.245 1.549 sum -20.387 -13.185 0.651 24.288 Atomic orbital electron populations 1.25652 0.96735 0.99447 0.99845 1.23149 0.94530 1.01623 1.01439 1.18352 0.84759 0.96743 1.00083 1.21565 0.91714 0.96049 1.03908 1.22060 0.96451 0.97566 0.89458 1.58783 1.01513 1.14972 1.42348 1.22562 0.91915 1.04123 0.82919 1.74382 0.95721 1.22833 1.26745 1.73893 1.16075 1.21304 1.06630 1.25115 0.85566 1.01443 0.93691 1.20881 0.91295 1.00868 0.95515 1.19065 0.85036 0.85145 0.92221 0.97193 1.86583 1.54162 1.63228 1.33940 1.21973 1.13231 0.93233 1.33389 0.91021 1.25936 0.99627 0.95434 0.96773 1.70237 1.40986 0.98121 1.44506 0.85512 0.79091 0.77684 0.79006 1.19419 1.21563 1.18660 1.46321 1.05903 1.53708 1.08328 1.21171 1.01225 0.97574 0.78484 1.22981 1.00257 0.95485 1.02986 1.24166 0.96278 1.01222 0.95616 1.22273 0.96956 0.85040 1.01888 1.21552 0.91652 1.01608 0.98168 0.74073 0.88745 0.89334 0.90448 0.93193 0.91698 0.88759 0.88165 0.79872 0.93065 0.86959 0.87980 0.87361 0.86783 0.85968 0.89789 0.94076 0.89966 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.63 19.25 74.32 1.43 -1.20 16 2 C -0.21 -3.29 12.57 31.13 0.39 -2.90 16 3 C 0.02 0.29 2.63 -12.52 -0.03 0.25 16 4 C -0.09 -1.62 5.33 30.65 0.16 -1.46 16 5 C 0.07 1.71 5.09 86.33 0.44 2.15 16 6 N -0.45 -11.35 4.67 -706.17 -3.30 -14.64 16 7 C 0.34 11.63 6.71 260.11 1.75 13.37 16 8 N -0.35 -14.65 11.69 -58.00 -0.68 -15.33 16 9 N -0.34 -15.50 12.18 -49.54 -0.60 -16.10 16 10 C 0.21 8.53 7.08 137.64 0.97 9.51 16 11 C -0.05 -1.82 5.14 29.85 0.15 -1.66 16 12 C 0.24 12.30 2.82 29.85 0.08 12.38 16 13 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 14 O -0.57 -28.35 11.94 -148.98 -1.78 -30.12 16 15 C -0.58 -30.56 8.75 25.60 0.22 -30.34 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.02 1.36 5.40 84.66 0.46 1.81 16 18 N -0.90 -53.78 12.84 21.45 0.28 -53.51 16 19 Si 0.96 42.34 29.54 68.60 2.03 44.36 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 23 N -0.45 -15.07 2.79 -518.91 -1.45 -16.52 16 24 C 0.14 3.41 6.25 85.63 0.53 3.95 16 25 C -0.20 -3.85 9.85 25.64 0.25 -3.60 16 26 C -0.14 -1.83 14.13 67.78 0.96 -0.87 16 27 C 0.07 1.27 5.39 86.32 0.47 1.74 16 28 C -0.09 -1.29 5.33 30.65 0.16 -1.13 16 29 H 0.24 1.42 7.80 -4.40 -0.03 1.38 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.27 8.06 -2.39 -0.02 1.25 16 34 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.10 3.35 7.78 -2.39 -0.02 3.33 16 37 H 0.36 14.71 7.96 -74.05 -0.59 14.13 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.11 2.51 7.79 -2.39 -0.02 2.49 16 40 H 0.10 2.69 6.20 -2.39 -0.01 2.68 16 41 H 0.11 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.11 1.29 7.84 -2.91 -0.02 1.27 16 43 H 0.12 1.23 8.06 -2.91 -0.02 1.20 16 44 H 0.08 1.60 7.91 -2.38 -0.02 1.58 16 45 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -73.98 395.43 3.27 -70.71 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.37 Total: 29.15 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 8.41 Total: 2.01 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -5.75 Total: -116.10 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -1.78 Total: -30.12 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.98 3.27 -70.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340318055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.332 kcal (2) G-P(sol) polarization free energy of solvation -73.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds