Wall clock time and date at job start Tue Mar 31 2020 15:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 H 1.09001 * 109.46469 * 305.17534 * 3 2 1 5 5 C 1.52996 * 109.47194 * 185.17753 * 3 2 1 6 6 C 1.52996 * 109.47193 * 64.99532 * 5 3 2 7 7 F 1.39904 * 109.47104 * 65.00225 * 6 5 3 8 8 F 1.39904 * 109.47061 * 184.99702 * 6 5 3 9 9 C 1.50695 * 109.47249 * 65.17319 * 3 2 1 10 10 O 1.21287 * 120.00202 * 34.75146 * 9 3 2 11 11 N 1.34780 * 119.99890 * 214.75372 * 9 3 2 12 12 C 1.44788 * 120.18144 * 4.66881 * 11 9 3 13 13 C 1.52720 * 112.25718 * 265.06392 * 12 11 9 14 14 C 1.51318 * 112.24243 * 284.71742 * 13 12 11 15 15 H 1.08998 * 111.30970 * 185.98760 * 14 13 12 16 16 C 1.54716 * 107.22428 * 308.03123 * 14 13 12 17 17 C 1.54232 * 104.37459 * 89.47359 * 16 14 13 18 18 C 1.50864 * 105.27700 * 11.56411 * 17 16 14 19 19 H 1.08997 * 105.90380 * 122.19490 * 18 17 16 20 20 C 1.49820 * 120.17831 * 184.95213 * 11 9 3 21 21 N 1.48069 * 109.90755 * 7.86840 * 18 17 16 22 22 C 1.36935 * 127.84212 * 155.18615 * 21 18 17 23 23 H 1.08000 * 119.99998 * 179.97438 * 22 21 18 24 24 C 1.38811 * 120.00088 * 359.97075 * 22 21 18 25 25 N 1.31623 * 119.99600 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00187 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47190 * 60.00384 * 26 24 22 28 28 H 1.48499 * 109.47464 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47294 * 300.00283 * 26 24 22 30 30 H 1.09000 * 109.47203 * 174.26637 * 1 2 3 31 31 H 1.09000 * 109.47663 * 294.27218 * 1 2 3 32 32 H 1.09006 * 109.46779 * 54.27297 * 1 2 3 33 33 H 1.09004 * 109.47377 * 239.99269 * 2 1 3 34 34 H 1.09004 * 109.46842 * 119.99431 * 2 1 3 35 35 H 1.08998 * 109.46933 * 304.99756 * 5 3 2 36 36 H 1.09004 * 109.47109 * 184.99492 * 5 3 2 37 37 H 1.08996 * 109.47433 * 305.00151 * 6 5 3 38 38 H 1.09007 * 108.93051 * 25.26643 * 12 11 9 39 39 H 1.09001 * 108.92823 * 143.84749 * 12 11 9 40 40 H 1.08990 * 108.64303 * 164.44679 * 13 12 11 41 41 H 1.09003 * 109.84181 * 45.79977 * 13 12 11 42 42 H 1.09003 * 110.44661 * 208.19823 * 16 14 13 43 43 H 1.09002 * 110.45134 * 330.62185 * 16 14 13 44 44 H 1.08998 * 110.28173 * 252.60953 * 17 16 14 45 45 H 1.08998 * 110.28220 * 130.51558 * 17 16 14 46 46 H 1.09009 * 109.54006 * 270.55196 * 20 11 9 47 47 H 1.09000 * 109.54474 * 30.82412 * 20 11 9 48 48 H 0.97002 * 119.99548 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9823 -0.8400 5 6 3.5644 1.4444 -0.1302 6 6 3.9606 0.8749 -1.4938 7 9 3.5017 1.7254 -2.5055 8 9 5.3537 0.7705 -1.5687 9 6 1.6451 2.1150 1.2894 10 8 1.6133 1.4776 2.3209 11 7 1.3271 3.4247 1.2965 12 6 1.2654 4.1655 0.0541 13 6 2.5734 4.8922 -0.2517 14 6 2.7573 6.1255 0.6055 15 1 3.6402 6.6892 0.3042 16 6 1.4717 6.9751 0.4677 17 6 0.5481 6.4566 1.5889 18 6 1.4256 5.5899 2.4577 19 1 1.3699 6.0173 3.4589 20 6 1.0417 4.1234 2.5907 21 7 2.8382 5.7161 2.0324 22 6 3.9637 5.5035 2.7828 23 1 4.9403 5.6331 2.3402 24 6 3.8495 5.1217 4.1125 25 7 2.6592 4.9634 4.6517 26 14 5.3847 4.8324 5.1364 27 1 6.1869 6.0810 5.1895 28 1 4.9942 4.4355 6.5130 29 1 6.1938 3.7500 4.5205 30 1 -0.3633 -1.0225 -0.1027 31 1 -0.3634 0.4224 0.9368 32 1 -0.3633 0.6001 -0.8343 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9973 0.8304 0.6596 36 1 3.9354 2.4655 -0.0412 37 1 3.5150 -0.1119 -1.6189 38 1 1.0558 3.4725 -0.7608 39 1 0.4551 4.8919 0.1154 40 1 2.5688 5.1918 -1.2996 41 1 3.4167 4.2217 -0.0857 42 1 1.6955 8.0315 0.6166 43 1 1.0139 6.8175 -0.5089 44 1 -0.2653 5.8670 1.1660 45 1 0.1503 7.2908 2.1667 46 1 -0.0207 4.0440 2.8214 47 1 1.6249 3.6646 3.3892 48 1 2.5794 4.6962 5.5808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699800619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:25 Heat of formation + Delta-G solvation = -105.697680 kcal Electronic energy + Delta-G solvation = -31935.497554 eV Core-core repulsion = 27661.945951 eV Total energy + Delta-G solvation = -4273.551602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92932 -46.93115 -40.14254 -38.41802 -35.30421 -34.23799 -32.98681 -31.57947 -31.10192 -29.46236 -27.59775 -26.38120 -25.69982 -23.83011 -23.15365 -22.37435 -21.20843 -19.50611 -19.25323 -18.15794 -17.53254 -17.25769 -17.02571 -16.70424 -15.94295 -15.32968 -14.89207 -14.65947 -14.45337 -14.08857 -13.94336 -13.89831 -13.56693 -13.34379 -13.30326 -13.04461 -12.70456 -12.54779 -12.42735 -12.04375 -11.92927 -11.79407 -11.54089 -11.43251 -11.28149 -11.23217 -10.94789 -10.91128 -10.84224 -10.79554 -10.56578 -10.48444 -10.21716 -9.92597 -9.68917 -9.56701 -9.45725 -8.95055 -8.58966 -7.73693 -6.88970 -5.71332 -3.09290 3.16819 3.40529 3.45710 3.46915 3.71360 3.89738 4.22123 4.46091 4.51130 4.59350 4.85121 4.95810 5.10227 5.17486 5.26337 5.38865 5.41249 5.46363 5.52263 5.57917 5.60682 5.63900 5.71168 5.84120 5.85093 5.94097 5.96702 5.99702 6.14820 6.23467 6.25454 6.27261 6.31485 6.47218 6.48049 6.59919 6.70905 6.80045 6.98232 7.04649 7.25361 7.49723 7.66481 7.86685 8.25021 8.28947 8.90849 9.16105 9.75729 10.48240 11.35086 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.005483 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.750948 B = 5105.736096 C = 5554.763846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.162 4.162 6 C 0.262 3.738 7 F -0.205 7.205 8 F -0.207 7.207 9 C 0.519 3.481 10 O -0.546 6.546 11 N -0.587 5.587 12 C 0.104 3.896 13 C -0.150 4.150 14 C 0.149 3.851 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.142 3.858 19 H 0.100 0.900 20 C 0.128 3.872 21 N -0.579 5.579 22 C -0.211 4.211 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.918 5.918 26 Si 0.913 3.087 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.287 1.287 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.127 0.873 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 -4.872 -13.155 14.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.200 4.200 6 C 0.209 3.791 7 F -0.187 7.187 8 F -0.188 7.188 9 C 0.305 3.695 10 O -0.425 6.425 11 N -0.319 5.319 12 C -0.020 4.020 13 C -0.191 4.191 14 C 0.042 3.958 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.162 4.162 18 C 0.035 3.965 19 H 0.117 0.883 20 C 0.007 3.993 21 N -0.301 5.301 22 C -0.338 4.338 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.743 3.257 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.214 1.214 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.144 0.856 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.600 -5.207 -12.330 14.153 hybrid contribution 0.927 -0.051 0.300 0.976 sum -3.673 -5.258 -12.030 13.633 Atomic orbital electron populations 1.21757 0.95301 1.01544 1.02277 1.21533 0.96758 0.94406 1.02440 1.21432 0.95042 0.98103 0.98731 0.88523 1.22596 0.96305 1.05584 0.95494 1.22010 0.75825 0.94351 0.86924 1.92975 1.88532 1.74071 1.63117 1.92985 1.32032 1.96953 1.96859 1.20025 0.77471 0.82394 0.89595 1.90653 1.53637 1.64047 1.34118 1.48504 1.66679 1.08018 1.08673 1.21311 0.98710 0.95893 0.86084 1.22293 0.97928 1.00159 0.98714 1.21139 0.95340 0.92385 0.86978 0.92222 1.22655 0.97018 0.99545 0.97642 1.21971 0.97749 0.99184 0.97334 1.20520 0.83777 0.91909 1.00246 0.88292 1.23265 0.97980 0.93876 0.84192 1.44946 1.01055 1.79359 1.04759 1.18912 0.84449 1.38836 0.91638 0.90501 1.24669 0.96842 1.01967 0.96897 1.69697 1.20269 1.53526 1.13179 0.86179 0.82046 0.77818 0.79614 1.21349 1.21574 1.21379 0.92612 0.92041 0.92967 0.91949 0.90182 0.88027 0.88205 0.87203 0.92263 0.89999 0.92731 0.92132 0.92414 0.92174 0.92384 0.92286 0.95271 0.85581 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.63 37.16 0.36 -1.43 16 2 C -0.11 -1.39 5.03 -26.73 -0.13 -1.52 16 3 C -0.11 -1.59 1.72 -91.78 -0.16 -1.75 16 4 H 0.10 1.25 5.26 -51.93 -0.27 0.98 16 5 C -0.16 -2.28 4.89 -26.74 -0.13 -2.41 16 6 C 0.26 3.09 5.16 37.16 0.19 3.29 16 7 F -0.21 -2.64 16.93 2.25 0.04 -2.60 16 8 F -0.21 -2.83 17.34 2.25 0.04 -2.79 16 9 C 0.52 9.94 5.83 -10.99 -0.06 9.88 16 10 O -0.55 -12.61 15.66 5.55 0.09 -12.52 16 11 N -0.59 -11.29 2.87 -172.92 -0.50 -11.78 16 12 C 0.10 1.65 4.94 -5.10 -0.03 1.62 16 13 C -0.15 -2.48 5.18 -27.72 -0.14 -2.62 16 14 C 0.15 2.79 4.01 -66.68 -0.27 2.53 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.06 6.01 -25.18 -0.15 -2.21 16 17 C -0.12 -2.14 5.78 -27.16 -0.16 -2.30 16 18 C 0.14 3.10 1.95 -68.56 -0.13 2.96 16 19 H 0.10 2.53 6.13 -51.93 -0.32 2.21 16 20 C 0.13 2.85 5.64 -2.61 -0.01 2.83 16 21 N -0.58 -13.41 2.68 -156.95 -0.42 -13.83 16 22 C -0.21 -5.54 10.40 -15.06 -0.16 -5.69 16 23 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 24 C -0.01 -0.23 5.47 -17.43 -0.10 -0.32 16 25 N -0.92 -25.35 8.15 55.49 0.45 -24.90 16 26 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.88 7.40 -51.93 -0.38 0.50 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 6.24 -51.93 -0.32 0.25 16 34 H 0.08 1.10 7.67 -51.93 -0.40 0.70 16 35 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.10 1.63 6.00 -51.93 -0.31 1.32 16 37 H 0.11 0.95 6.25 -51.93 -0.32 0.63 16 38 H 0.06 0.80 5.58 -51.92 -0.29 0.51 16 39 H 0.08 1.23 3.93 -51.93 -0.20 1.03 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.12 6.00 -51.93 -0.31 0.81 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.80 7.40 -51.93 -0.38 0.41 16 44 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 47 H 0.13 3.41 5.40 -51.93 -0.28 3.13 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -29.92 356.84 -8.08 -38.00 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.05 Total: 5.09 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.08 Total: 2.86 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.47 Total: -50.51 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.08 Total: -5.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.92 -8.08 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699800619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.696 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds