Wall clock time and date at job start Tue Mar 31 2020 15:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 H 1.09001 * 109.46469 * 305.17534 * 3 2 1 5 5 C 1.52996 * 109.47194 * 185.17753 * 3 2 1 6 6 C 1.52996 * 109.47193 * 64.99532 * 5 3 2 7 7 F 1.39904 * 109.47104 * 65.00225 * 6 5 3 8 8 F 1.39904 * 109.47061 * 184.99702 * 6 5 3 9 9 C 1.50695 * 109.47249 * 65.17319 * 3 2 1 10 10 O 1.21287 * 120.00202 * 34.75146 * 9 3 2 11 11 N 1.34780 * 119.99890 * 214.75372 * 9 3 2 12 12 C 1.44788 * 120.18144 * 4.66881 * 11 9 3 13 13 C 1.52720 * 112.25718 * 265.06392 * 12 11 9 14 14 C 1.51318 * 112.24243 * 284.71742 * 13 12 11 15 15 H 1.08998 * 111.30970 * 185.98760 * 14 13 12 16 16 C 1.54716 * 107.22428 * 308.03123 * 14 13 12 17 17 C 1.54232 * 104.37459 * 89.47359 * 16 14 13 18 18 C 1.50864 * 105.27700 * 11.56411 * 17 16 14 19 19 H 1.08997 * 105.90380 * 122.19490 * 18 17 16 20 20 C 1.49820 * 120.17831 * 184.95213 * 11 9 3 21 21 N 1.48069 * 109.90755 * 7.86840 * 18 17 16 22 22 C 1.36935 * 127.84212 * 155.18615 * 21 18 17 23 23 H 1.08000 * 119.99998 * 179.97438 * 22 21 18 24 24 C 1.38811 * 120.00088 * 359.97075 * 22 21 18 25 25 N 1.31623 * 119.99600 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00187 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47190 * 60.00384 * 26 24 22 28 28 H 1.48499 * 109.47464 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47294 * 300.00283 * 26 24 22 30 30 H 1.09000 * 109.47203 * 174.26637 * 1 2 3 31 31 H 1.09000 * 109.47663 * 294.27218 * 1 2 3 32 32 H 1.09006 * 109.46779 * 54.27297 * 1 2 3 33 33 H 1.09004 * 109.47377 * 239.99269 * 2 1 3 34 34 H 1.09004 * 109.46842 * 119.99431 * 2 1 3 35 35 H 1.08998 * 109.46933 * 304.99756 * 5 3 2 36 36 H 1.09004 * 109.47109 * 184.99492 * 5 3 2 37 37 H 1.08996 * 109.47433 * 305.00151 * 6 5 3 38 38 H 1.09007 * 108.93051 * 25.26643 * 12 11 9 39 39 H 1.09001 * 108.92823 * 143.84749 * 12 11 9 40 40 H 1.08990 * 108.64303 * 164.44679 * 13 12 11 41 41 H 1.09003 * 109.84181 * 45.79977 * 13 12 11 42 42 H 1.09003 * 110.44661 * 208.19823 * 16 14 13 43 43 H 1.09002 * 110.45134 * 330.62185 * 16 14 13 44 44 H 1.08998 * 110.28173 * 252.60953 * 17 16 14 45 45 H 1.08998 * 110.28220 * 130.51558 * 17 16 14 46 46 H 1.09009 * 109.54006 * 270.55196 * 20 11 9 47 47 H 1.09000 * 109.54474 * 30.82412 * 20 11 9 48 48 H 0.97002 * 119.99548 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9823 -0.8400 5 6 3.5644 1.4444 -0.1302 6 6 3.9606 0.8749 -1.4938 7 9 3.5017 1.7254 -2.5055 8 9 5.3537 0.7705 -1.5687 9 6 1.6451 2.1150 1.2894 10 8 1.6133 1.4776 2.3209 11 7 1.3271 3.4247 1.2965 12 6 1.2654 4.1655 0.0541 13 6 2.5734 4.8922 -0.2517 14 6 2.7573 6.1255 0.6055 15 1 3.6402 6.6892 0.3042 16 6 1.4717 6.9751 0.4677 17 6 0.5481 6.4566 1.5889 18 6 1.4256 5.5899 2.4577 19 1 1.3699 6.0173 3.4589 20 6 1.0417 4.1234 2.5907 21 7 2.8382 5.7161 2.0324 22 6 3.9637 5.5035 2.7828 23 1 4.9403 5.6331 2.3402 24 6 3.8495 5.1217 4.1125 25 7 2.6592 4.9634 4.6517 26 14 5.3847 4.8324 5.1364 27 1 6.1869 6.0810 5.1895 28 1 4.9942 4.4355 6.5130 29 1 6.1938 3.7500 4.5205 30 1 -0.3633 -1.0225 -0.1027 31 1 -0.3634 0.4224 0.9368 32 1 -0.3633 0.6001 -0.8343 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9973 0.8304 0.6596 36 1 3.9354 2.4655 -0.0412 37 1 3.5150 -0.1119 -1.6189 38 1 1.0558 3.4725 -0.7608 39 1 0.4551 4.8919 0.1154 40 1 2.5688 5.1918 -1.2996 41 1 3.4167 4.2217 -0.0857 42 1 1.6955 8.0315 0.6166 43 1 1.0139 6.8175 -0.5089 44 1 -0.2653 5.8670 1.1660 45 1 0.1503 7.2908 2.1667 46 1 -0.0207 4.0440 2.8214 47 1 1.6249 3.6646 3.3892 48 1 2.5794 4.6962 5.5808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699800619.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:24 Heat of formation + Delta-G solvation = -122.707329 kcal Electronic energy + Delta-G solvation = -31936.235147 eV Core-core repulsion = 27661.945951 eV Total energy + Delta-G solvation = -4274.289196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.90716 -47.91587 -41.61960 -39.90731 -36.57229 -35.81597 -34.77969 -33.12655 -32.13816 -31.26709 -29.02310 -27.68318 -27.19338 -25.61850 -24.22372 -23.65796 -22.43451 -21.02229 -20.93023 -19.46172 -18.81015 -18.50029 -18.37326 -17.90380 -17.20674 -16.76680 -16.71063 -16.09361 -15.95591 -15.67274 -15.32606 -14.98669 -14.73666 -14.60285 -14.35325 -14.28426 -14.20705 -14.09148 -13.61738 -13.48632 -13.36333 -13.09538 -13.00735 -12.90181 -12.72732 -12.64396 -12.57942 -12.48077 -12.19099 -12.04476 -11.98395 -11.72584 -11.64955 -11.52015 -11.39108 -11.27536 -10.90611 -10.68187 -10.27099 -9.33061 -8.79249 -7.76011 -5.12062 1.40382 1.42777 1.47690 1.71670 2.28614 2.48394 2.89553 3.22890 3.36024 3.42936 3.55523 3.63034 3.77410 3.88981 3.96257 4.02942 4.12325 4.17830 4.27822 4.30692 4.42143 4.47884 4.51797 4.59970 4.66543 4.74993 4.82040 4.83866 4.89806 4.92152 4.97123 5.08019 5.14115 5.16066 5.27648 5.29857 5.36512 5.36635 5.39226 5.51554 5.61779 5.72427 5.89656 6.01647 6.33714 6.79533 7.14376 7.42204 7.81608 8.54464 9.26491 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010809 B = 0.005483 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.750948 B = 5105.736096 C = 5554.763846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.121 0.879 5 C -0.161 4.161 6 C 0.271 3.729 7 F -0.207 7.207 8 F -0.219 7.219 9 C 0.507 3.493 10 O -0.598 6.598 11 N -0.590 5.590 12 C 0.098 3.902 13 C -0.143 4.143 14 C 0.136 3.864 15 H 0.055 0.945 16 C -0.116 4.116 17 C -0.118 4.118 18 C 0.152 3.848 19 H 0.051 0.949 20 C 0.134 3.866 21 N -0.599 5.599 22 C -0.212 4.212 23 H 0.073 0.927 24 C -0.061 4.061 25 N -0.932 5.932 26 Si 0.959 3.041 27 H -0.277 1.277 28 H -0.299 1.299 29 H -0.292 1.292 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.155 0.845 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.031 0.969 47 H 0.074 0.926 48 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -5.042 -17.437 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.118 4.118 4 H 0.138 0.862 5 C -0.199 4.199 6 C 0.218 3.782 7 F -0.188 7.188 8 F -0.200 7.200 9 C 0.296 3.704 10 O -0.479 6.479 11 N -0.320 5.320 12 C -0.025 4.025 13 C -0.184 4.184 14 C 0.030 3.970 15 H 0.073 0.927 16 C -0.154 4.154 17 C -0.156 4.156 18 C 0.045 3.955 19 H 0.069 0.931 20 C 0.011 3.989 21 N -0.322 5.322 22 C -0.341 4.341 23 H 0.091 0.909 24 C -0.254 4.254 25 N -0.582 5.582 26 Si 0.790 3.210 27 H -0.203 1.203 28 H -0.226 1.226 29 H -0.219 1.219 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.054 0.946 42 H 0.079 0.921 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.533 -5.342 -16.680 18.368 hybrid contribution 1.245 0.023 1.637 2.057 sum -4.289 -5.319 -15.043 16.522 Atomic orbital electron populations 1.21748 0.94839 1.02939 1.01139 1.21591 0.97165 0.92852 1.03392 1.21405 0.95060 0.99253 0.96101 0.86169 1.22532 0.96122 1.04060 0.97234 1.22146 0.75309 0.95745 0.85024 1.92971 1.88442 1.74504 1.62921 1.92968 1.33237 1.97008 1.96785 1.20990 0.76268 0.82219 0.90907 1.90624 1.55564 1.65213 1.36546 1.48537 1.66335 1.08384 1.08746 1.21602 0.98827 0.96809 0.85232 1.22192 0.97326 0.98412 1.00433 1.21461 0.96920 0.93997 0.84651 0.92703 1.22605 0.94871 0.98961 0.98982 1.21893 0.97725 0.98671 0.97269 1.20444 0.84210 0.91762 0.99093 0.93142 1.22736 0.96935 0.94374 0.84848 1.45117 1.00776 1.79304 1.07004 1.19100 0.85656 1.37399 0.91932 0.90890 1.25272 0.98656 1.03318 0.98175 1.69953 1.21267 1.54669 1.12279 0.85424 0.79932 0.77684 0.77934 1.20312 1.22563 1.21876 0.90671 0.95622 0.90934 0.87667 0.92463 0.89384 0.90794 0.82853 0.88808 0.88426 0.88605 0.94618 0.92054 0.87911 0.89842 0.91889 0.95114 0.90815 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.63 71.98 0.69 -2.44 16 2 C -0.11 -2.45 5.03 30.59 0.15 -2.29 16 3 C -0.10 -2.57 1.72 -11.54 -0.02 -2.59 16 4 H 0.12 2.58 5.26 -2.39 -0.01 2.57 16 5 C -0.16 -4.34 4.89 30.59 0.15 -4.19 16 6 C 0.27 5.48 5.16 71.98 0.37 5.85 16 7 F -0.21 -4.44 16.93 44.97 0.76 -3.67 16 8 F -0.22 -5.49 17.34 44.97 0.78 -4.71 16 9 C 0.51 19.63 5.83 87.65 0.51 20.14 16 10 O -0.60 -29.08 15.66 -3.05 -0.05 -29.13 16 11 N -0.59 -22.49 2.87 -819.39 -2.35 -24.85 16 12 C 0.10 2.76 4.94 86.61 0.43 3.19 16 13 C -0.14 -4.29 5.18 29.95 0.16 -4.13 16 14 C 0.14 4.82 4.01 44.61 0.18 5.00 16 15 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.12 -3.24 6.01 31.60 0.19 -3.05 16 17 C -0.12 -3.80 5.78 30.32 0.18 -3.63 16 18 C 0.15 6.73 1.95 43.72 0.09 6.82 16 19 H 0.05 2.72 6.13 -2.39 -0.01 2.71 16 20 C 0.13 6.20 5.64 85.46 0.48 6.68 16 21 N -0.60 -28.19 2.68 -650.46 -1.74 -29.94 16 22 C -0.21 -11.53 10.40 84.03 0.87 -10.66 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 24 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 25 N -0.93 -54.88 8.15 21.65 0.18 -54.70 16 26 Si 0.96 47.56 29.55 68.60 2.03 49.58 16 27 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 29 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.02 0.71 7.40 -2.39 -0.02 0.69 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.11 1.40 6.24 -2.38 -0.01 1.39 16 34 H 0.06 1.53 7.67 -2.39 -0.02 1.51 16 35 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 2.39 6.00 -2.38 -0.01 2.38 16 37 H 0.15 1.85 6.25 -2.39 -0.01 1.84 16 38 H 0.09 2.04 5.58 -2.38 -0.01 2.03 16 39 H 0.10 2.48 3.93 -2.39 -0.01 2.47 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.26 6.00 -2.39 -0.01 1.25 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 2.07 7.40 -2.39 -0.02 2.05 16 44 H 0.08 2.29 6.16 -2.39 -0.01 2.27 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.07 4.28 5.40 -2.39 -0.01 4.26 16 48 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -72.84 356.84 5.47 -67.37 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.98 Total: 18.34 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.89 Total: 11.71 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.92 Total: -109.49 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.05 Total: -29.13 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.54 Total: -8.38 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.58 kcal Total: -72.84 5.47 -67.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699800619.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.336 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds