Wall clock time and date at job start Tue Mar 31 2020 15:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 H 1.08999 * 109.46984 * 179.35044 * 3 2 1 5 5 C 1.52995 * 109.46969 * 299.35622 * 3 2 1 6 6 C 1.53009 * 109.47052 * 293.86403 * 5 3 2 7 7 F 1.39898 * 109.46786 * 174.76678 * 6 5 3 8 8 F 1.39899 * 109.46960 * 294.77020 * 6 5 3 9 9 C 1.50702 * 109.47070 * 59.35501 * 3 2 1 10 10 O 1.21286 * 119.99902 * 270.71398 * 9 3 2 11 11 N 1.34779 * 120.00284 * 90.71392 * 9 3 2 12 12 C 1.44788 * 120.17572 * 354.83796 * 11 9 3 13 13 C 1.51516 * 112.22185 * 264.55214 * 12 11 9 14 14 C 1.51303 * 113.25595 * 285.36881 * 13 12 11 15 15 H 1.09007 * 111.31942 * 185.23711 * 14 13 12 16 16 C 1.54720 * 107.22679 * 307.28103 * 14 13 12 17 17 C 1.54237 * 104.37433 * 89.46700 * 16 14 13 18 18 C 1.50868 * 105.27527 * 11.56865 * 17 16 14 19 19 H 1.08998 * 105.90358 * 122.19635 * 18 17 16 20 20 C 1.52181 * 117.20435 * 240.83179 * 18 17 16 21 21 N 1.48062 * 109.90818 * 7.86847 * 18 17 16 22 22 C 1.36931 * 127.84177 * 155.19943 * 21 18 17 23 23 H 1.08001 * 120.00263 * 179.97438 * 22 21 18 24 24 C 1.38814 * 119.99995 * 359.97323 * 22 21 18 25 25 N 1.31619 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99920 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46713 * 90.00197 * 26 24 22 28 28 H 1.48500 * 109.46947 * 210.00115 * 26 24 22 29 29 H 1.48495 * 109.47417 * 330.00485 * 26 24 22 30 30 H 1.09000 * 109.47284 * 184.95129 * 1 2 3 31 31 H 1.09003 * 109.47137 * 304.95705 * 1 2 3 32 32 H 1.09001 * 109.47235 * 64.95043 * 1 2 3 33 33 H 1.08997 * 109.47550 * 239.99619 * 2 1 3 34 34 H 1.09005 * 109.47222 * 119.99933 * 2 1 3 35 35 H 1.09002 * 109.47390 * 53.86360 * 5 3 2 36 36 H 1.08999 * 109.47153 * 173.86700 * 5 3 2 37 37 H 1.08999 * 109.46675 * 54.76580 * 6 5 3 38 38 H 1.09001 * 108.93095 * 143.85268 * 12 11 9 39 39 H 1.08995 * 108.86399 * 25.21581 * 12 11 9 40 40 H 1.09000 * 108.72617 * 164.39366 * 13 12 11 41 41 H 1.09001 * 108.72477 * 46.34453 * 13 12 11 42 42 H 1.09001 * 110.45386 * 208.19339 * 16 14 13 43 43 H 1.09003 * 110.45331 * 330.61676 * 16 14 13 44 44 H 1.08993 * 110.28277 * 252.61545 * 17 16 14 45 45 H 1.09003 * 110.28195 * 130.52246 * 17 16 14 46 46 H 1.09003 * 109.54469 * 191.29742 * 20 18 17 47 47 H 1.08996 * 109.54877 * 311.57320 * 20 18 17 48 48 H 0.96992 * 119.99778 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0117 5 6 1.5433 2.1590 -1.2572 6 6 2.1885 1.5275 -2.4926 7 9 1.6455 2.1016 -3.6471 8 9 3.5689 1.7530 -2.4646 9 6 1.5247 2.1575 1.2224 10 8 0.4592 2.7356 1.1827 11 7 2.2478 2.1546 2.3598 12 6 3.4644 1.3744 2.4468 13 6 3.2292 0.0138 3.0706 14 6 3.0218 0.0711 4.5683 15 1 2.9474 -0.9286 4.9965 16 6 4.2150 0.8534 5.1665 17 6 3.7556 2.3257 5.1478 18 6 2.2802 2.2777 4.8366 19 1 1.7834 2.7801 5.6665 20 6 1.8140 2.9747 3.5666 21 7 1.8056 0.8754 4.8585 22 6 0.5348 0.4221 5.0923 23 1 0.3282 -0.6378 5.0776 24 6 -0.4880 1.3251 5.3482 25 7 -0.2364 2.6169 5.3656 26 14 -2.2218 0.7068 5.6664 27 1 -2.4034 0.4693 7.1209 28 1 -3.2020 1.7222 5.2043 29 1 -2.4383 -0.5626 4.9269 30 1 -0.3634 -1.0238 0.0887 31 1 -0.3633 0.5888 0.8423 32 1 -0.3634 0.4351 -0.9310 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.4595 2.0647 -1.3250 36 1 1.8137 3.2136 -1.2051 37 1 1.9956 0.4548 -2.4949 38 1 4.1913 1.9188 3.0496 39 1 3.8683 1.2385 1.4436 40 1 4.0900 -0.6210 2.8605 41 1 2.3474 -0.4336 2.6120 42 1 4.4098 0.5282 6.1884 43 1 5.1042 0.7220 4.5499 44 1 4.2875 2.8776 4.3729 45 1 3.9216 2.7857 6.1219 46 1 0.7258 3.0389 3.5643 47 1 2.2398 3.9771 3.5234 48 1 -0.9511 3.2477 5.5447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699800624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:27 Heat of formation + Delta-G solvation = -103.182628 kcal Electronic energy + Delta-G solvation = -31709.316560 eV Core-core repulsion = 27435.874019 eV Total energy + Delta-G solvation = -4273.442541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.00687 -47.00935 -40.11913 -38.45520 -35.43033 -34.22738 -32.95930 -31.55326 -30.54106 -29.45310 -27.78628 -26.49824 -25.66537 -23.77651 -23.55224 -22.39372 -20.94076 -19.52654 -19.23658 -17.92859 -17.66434 -17.25967 -17.05874 -16.53510 -15.80907 -15.51020 -15.09626 -14.79475 -14.58400 -14.14771 -13.92901 -13.90534 -13.68886 -13.37198 -13.09464 -12.80597 -12.67940 -12.54541 -12.40864 -12.06792 -11.93528 -11.81137 -11.48436 -11.39402 -11.31809 -11.24830 -10.95073 -10.84743 -10.80041 -10.76251 -10.62116 -10.45049 -10.19783 -9.92391 -9.68302 -9.56906 -9.45298 -8.92215 -8.58899 -7.72583 -6.89008 -5.71675 -3.09158 3.28096 3.39716 3.45007 3.48127 3.51646 3.88140 4.21586 4.43920 4.46753 4.54834 4.91783 5.00249 5.00837 5.19123 5.26255 5.39267 5.41255 5.46924 5.54717 5.58989 5.62119 5.64977 5.71810 5.85071 5.88294 5.93037 6.02007 6.09371 6.13872 6.23716 6.25282 6.26330 6.45142 6.47621 6.58204 6.62554 6.67981 6.78300 6.96956 7.04660 7.21904 7.49519 7.65579 7.86855 8.24636 8.29921 8.91633 9.16004 9.75828 10.47951 11.35263 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.004838 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.589146 B = 5785.570892 C = 6825.785414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.111 4.111 4 H 0.095 0.905 5 C -0.154 4.154 6 C 0.259 3.741 7 F -0.208 7.208 8 F -0.208 7.208 9 C 0.520 3.480 10 O -0.544 6.544 11 N -0.592 5.592 12 C 0.104 3.896 13 C -0.151 4.151 14 C 0.151 3.849 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.124 4.124 18 C 0.143 3.857 19 H 0.100 0.900 20 C 0.128 3.872 21 N -0.578 5.578 22 C -0.209 4.209 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.912 3.088 27 H -0.291 1.291 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.128 0.872 47 H 0.033 0.967 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -3.764 -9.805 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.155 4.155 3 C -0.133 4.133 4 H 0.113 0.887 5 C -0.193 4.193 6 C 0.206 3.794 7 F -0.190 7.190 8 F -0.189 7.189 9 C 0.306 3.694 10 O -0.423 6.423 11 N -0.325 5.325 12 C -0.020 4.020 13 C -0.192 4.192 14 C 0.043 3.957 15 H 0.078 0.922 16 C -0.169 4.169 17 C -0.163 4.163 18 C 0.036 3.964 19 H 0.118 0.882 20 C 0.008 3.992 21 N -0.300 5.300 22 C -0.337 4.337 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.567 5.567 26 Si 0.743 3.257 27 H -0.218 1.218 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.145 0.855 47 H 0.051 0.949 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.787 -3.361 -9.739 13.540 hybrid contribution -0.677 -0.304 -0.018 0.742 sum 8.110 -3.665 -9.756 13.206 Atomic orbital electron populations 1.21898 0.94720 1.01926 1.03129 1.21590 0.97490 0.93690 1.02751 1.21366 1.01857 0.96642 0.93423 0.88673 1.22523 1.03714 1.01562 0.91468 1.22057 0.74865 0.98968 0.83522 1.92973 1.85712 1.87552 1.52730 1.92969 1.32832 1.96402 1.96710 1.19988 0.84621 0.80822 0.83950 1.90667 1.21424 1.45954 1.84226 1.49048 1.23929 1.45745 1.13749 1.21035 0.87917 0.93109 0.99931 1.22106 1.00678 0.96518 0.99913 1.21115 0.87750 0.95071 0.91762 0.92218 1.22653 0.97760 0.96147 1.00311 1.21959 0.97775 0.96222 1.00294 1.20512 0.90390 0.87793 0.97696 0.88240 1.23706 1.04595 0.89660 0.81271 1.44938 1.03275 0.99909 1.81907 1.18933 0.82625 0.91967 1.40150 0.90503 1.24645 0.97806 0.95370 1.02393 1.69691 1.31283 1.00095 1.55630 0.86111 0.84438 0.77525 0.77641 1.21804 1.21634 1.20975 0.92789 0.90601 0.92923 0.91788 0.90185 0.87309 0.89333 0.87110 0.90413 0.92252 0.92859 0.91946 0.92438 0.92210 0.92420 0.92288 0.85454 0.94893 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.19 37.15 0.34 -1.97 16 2 C -0.12 -1.50 5.49 -26.73 -0.15 -1.65 16 3 C -0.11 -1.56 1.81 -91.77 -0.17 -1.72 16 4 H 0.10 1.20 5.56 -51.93 -0.29 0.91 16 5 C -0.15 -2.00 4.22 -26.73 -0.11 -2.11 16 6 C 0.26 2.86 5.17 37.16 0.19 3.05 16 7 F -0.21 -2.60 17.34 2.25 0.04 -2.56 16 8 F -0.21 -2.53 16.93 2.25 0.04 -2.50 16 9 C 0.52 9.87 5.92 -10.98 -0.07 9.81 16 10 O -0.54 -12.50 14.85 5.55 0.08 -12.42 16 11 N -0.59 -11.27 2.91 -171.51 -0.50 -11.77 16 12 C 0.10 1.61 5.07 -5.71 -0.03 1.58 16 13 C -0.15 -2.39 4.82 -28.34 -0.14 -2.53 16 14 C 0.15 2.75 4.01 -66.68 -0.27 2.49 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.13 -2.02 6.02 -25.18 -0.15 -2.17 16 17 C -0.12 -2.12 5.78 -27.15 -0.16 -2.27 16 18 C 0.14 3.08 1.94 -68.56 -0.13 2.94 16 19 H 0.10 2.53 6.14 -51.93 -0.32 2.21 16 20 C 0.13 2.82 5.86 -1.20 -0.01 2.81 16 21 N -0.58 -13.22 2.67 -156.94 -0.42 -13.64 16 22 C -0.21 -5.44 10.40 -15.06 -0.16 -5.60 16 23 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.01 -0.18 5.47 -17.43 -0.10 -0.28 16 25 N -0.92 -25.25 8.14 55.49 0.45 -24.80 16 26 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.44 6.31 -51.93 -0.33 1.11 16 32 H 0.05 0.68 6.58 -51.93 -0.34 0.33 16 33 H 0.06 0.62 6.47 -51.93 -0.34 0.28 16 34 H 0.08 1.10 5.67 -51.93 -0.29 0.81 16 35 H 0.11 1.48 6.16 -51.93 -0.32 1.16 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.11 0.93 6.37 -51.93 -0.33 0.60 16 38 H 0.08 1.16 4.06 -51.93 -0.21 0.94 16 39 H 0.06 0.77 5.48 -51.93 -0.28 0.49 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.10 5.96 -51.93 -0.31 0.79 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.77 7.44 -51.93 -0.39 0.39 16 44 H 0.06 0.88 6.22 -51.93 -0.32 0.56 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.13 3.42 5.29 -51.93 -0.27 3.14 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -29.62 351.72 -7.97 -37.60 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.85 Total: 5.44 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.09 Total: 2.37 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.47 Total: -50.21 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.08 Total: -5.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.62 -7.97 -37.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699800624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.587 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds