Wall clock time and date at job start Tue Mar 31 2020 15:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47460 * 2 1 4 4 H 1.08999 * 109.46984 * 179.35044 * 3 2 1 5 5 C 1.52995 * 109.46969 * 299.35622 * 3 2 1 6 6 C 1.53009 * 109.47052 * 293.86403 * 5 3 2 7 7 F 1.39898 * 109.46786 * 174.76678 * 6 5 3 8 8 F 1.39899 * 109.46960 * 294.77020 * 6 5 3 9 9 C 1.50702 * 109.47070 * 59.35501 * 3 2 1 10 10 O 1.21286 * 119.99902 * 270.71398 * 9 3 2 11 11 N 1.34779 * 120.00284 * 90.71392 * 9 3 2 12 12 C 1.44788 * 120.17572 * 354.83796 * 11 9 3 13 13 C 1.51516 * 112.22185 * 264.55214 * 12 11 9 14 14 C 1.51303 * 113.25595 * 285.36881 * 13 12 11 15 15 H 1.09007 * 111.31942 * 185.23711 * 14 13 12 16 16 C 1.54720 * 107.22679 * 307.28103 * 14 13 12 17 17 C 1.54237 * 104.37433 * 89.46700 * 16 14 13 18 18 C 1.50868 * 105.27527 * 11.56865 * 17 16 14 19 19 H 1.08998 * 105.90358 * 122.19635 * 18 17 16 20 20 C 1.52181 * 117.20435 * 240.83179 * 18 17 16 21 21 N 1.48062 * 109.90818 * 7.86847 * 18 17 16 22 22 C 1.36931 * 127.84177 * 155.19943 * 21 18 17 23 23 H 1.08001 * 120.00263 * 179.97438 * 22 21 18 24 24 C 1.38814 * 119.99995 * 359.97323 * 22 21 18 25 25 N 1.31619 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99920 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46713 * 90.00197 * 26 24 22 28 28 H 1.48500 * 109.46947 * 210.00115 * 26 24 22 29 29 H 1.48495 * 109.47417 * 330.00485 * 26 24 22 30 30 H 1.09000 * 109.47284 * 184.95129 * 1 2 3 31 31 H 1.09003 * 109.47137 * 304.95705 * 1 2 3 32 32 H 1.09001 * 109.47235 * 64.95043 * 1 2 3 33 33 H 1.08997 * 109.47550 * 239.99619 * 2 1 3 34 34 H 1.09005 * 109.47222 * 119.99933 * 2 1 3 35 35 H 1.09002 * 109.47390 * 53.86360 * 5 3 2 36 36 H 1.08999 * 109.47153 * 173.86700 * 5 3 2 37 37 H 1.08999 * 109.46675 * 54.76580 * 6 5 3 38 38 H 1.09001 * 108.93095 * 143.85268 * 12 11 9 39 39 H 1.08995 * 108.86399 * 25.21581 * 12 11 9 40 40 H 1.09000 * 108.72617 * 164.39366 * 13 12 11 41 41 H 1.09001 * 108.72477 * 46.34453 * 13 12 11 42 42 H 1.09001 * 110.45386 * 208.19339 * 16 14 13 43 43 H 1.09003 * 110.45331 * 330.61676 * 16 14 13 44 44 H 1.08993 * 110.28277 * 252.61545 * 17 16 14 45 45 H 1.09003 * 110.28195 * 130.52246 * 17 16 14 46 46 H 1.09003 * 109.54469 * 191.29742 * 20 18 17 47 47 H 1.08996 * 109.54877 * 311.57320 * 20 18 17 48 48 H 0.96992 * 119.99778 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0117 5 6 1.5433 2.1590 -1.2572 6 6 2.1885 1.5275 -2.4926 7 9 1.6455 2.1016 -3.6471 8 9 3.5689 1.7530 -2.4646 9 6 1.5247 2.1575 1.2224 10 8 0.4592 2.7356 1.1827 11 7 2.2478 2.1546 2.3598 12 6 3.4644 1.3744 2.4468 13 6 3.2292 0.0138 3.0706 14 6 3.0218 0.0711 4.5683 15 1 2.9474 -0.9286 4.9965 16 6 4.2150 0.8534 5.1665 17 6 3.7556 2.3257 5.1478 18 6 2.2802 2.2777 4.8366 19 1 1.7834 2.7801 5.6665 20 6 1.8140 2.9747 3.5666 21 7 1.8056 0.8754 4.8585 22 6 0.5348 0.4221 5.0923 23 1 0.3282 -0.6378 5.0776 24 6 -0.4880 1.3251 5.3482 25 7 -0.2364 2.6169 5.3656 26 14 -2.2218 0.7068 5.6664 27 1 -2.4034 0.4693 7.1209 28 1 -3.2020 1.7222 5.2043 29 1 -2.4383 -0.5626 4.9269 30 1 -0.3634 -1.0238 0.0887 31 1 -0.3633 0.5888 0.8423 32 1 -0.3634 0.4351 -0.9310 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.4595 2.0647 -1.3250 36 1 1.8137 3.2136 -1.2051 37 1 1.9956 0.4548 -2.4949 38 1 4.1913 1.9188 3.0496 39 1 3.8683 1.2385 1.4436 40 1 4.0900 -0.6210 2.8605 41 1 2.3474 -0.4336 2.6120 42 1 4.4098 0.5282 6.1884 43 1 5.1042 0.7220 4.5499 44 1 4.2875 2.8776 4.3729 45 1 3.9216 2.7857 6.1219 46 1 0.7258 3.0389 3.5643 47 1 2.2398 3.9771 3.5234 48 1 -0.9511 3.2477 5.5447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699800624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:27 Heat of formation + Delta-G solvation = -120.219818 kcal Electronic energy + Delta-G solvation = -31710.055348 eV Core-core repulsion = 27435.874019 eV Total energy + Delta-G solvation = -4274.181329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.90102 -47.91064 -41.54993 -39.90910 -36.69960 -35.77598 -34.71753 -33.09504 -31.59304 -31.23164 -29.15573 -27.76365 -27.20535 -25.56097 -24.54808 -23.74526 -22.15029 -20.98308 -20.89801 -19.10814 -18.78335 -18.55168 -18.35442 -17.79601 -16.93984 -16.88038 -16.67425 -16.34505 -15.96506 -15.78175 -15.27503 -15.14156 -14.80156 -14.58489 -14.28395 -14.15871 -14.01524 -13.78341 -13.71347 -13.54404 -13.38387 -13.04321 -13.00079 -12.90024 -12.70123 -12.65347 -12.53573 -12.43207 -12.30968 -12.02110 -11.82645 -11.79235 -11.62166 -11.49440 -11.36828 -11.22520 -10.84328 -10.64442 -10.22542 -9.27918 -8.76522 -7.74484 -5.09515 1.40402 1.42967 1.48891 1.84771 2.17869 2.49681 2.92751 3.27686 3.39120 3.42862 3.60117 3.66345 3.81891 3.89820 3.97719 4.06459 4.12458 4.18818 4.30250 4.36838 4.38845 4.48789 4.56873 4.58006 4.69638 4.78759 4.82274 4.88270 4.90760 4.96622 4.97777 5.08969 5.13142 5.17675 5.21492 5.32237 5.38653 5.41214 5.44349 5.54325 5.63625 5.78187 5.90903 6.04032 6.35395 6.84998 7.16533 7.47281 7.84328 8.56825 9.28796 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.004838 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.589146 B = 5785.570892 C = 6825.785414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.097 4.097 4 H 0.122 0.878 5 C -0.153 4.153 6 C 0.267 3.733 7 F -0.217 7.217 8 F -0.211 7.211 9 C 0.507 3.493 10 O -0.598 6.598 11 N -0.595 5.595 12 C 0.097 3.903 13 C -0.144 4.144 14 C 0.137 3.863 15 H 0.057 0.943 16 C -0.116 4.116 17 C -0.118 4.118 18 C 0.153 3.847 19 H 0.050 0.950 20 C 0.132 3.868 21 N -0.599 5.599 22 C -0.206 4.206 23 H 0.075 0.925 24 C -0.060 4.060 25 N -0.933 5.933 26 Si 0.957 3.043 27 H -0.286 1.286 28 H -0.307 1.307 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.258 -6.157 -11.807 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.118 4.118 4 H 0.139 0.861 5 C -0.192 4.192 6 C 0.214 3.786 7 F -0.199 7.199 8 F -0.193 7.193 9 C 0.296 3.704 10 O -0.480 6.480 11 N -0.326 5.326 12 C -0.026 4.026 13 C -0.184 4.184 14 C 0.031 3.969 15 H 0.075 0.925 16 C -0.155 4.155 17 C -0.156 4.156 18 C 0.046 3.954 19 H 0.067 0.933 20 C 0.010 3.990 21 N -0.322 5.322 22 C -0.336 4.336 23 H 0.092 0.908 24 C -0.253 4.253 25 N -0.584 5.584 26 Si 0.788 3.212 27 H -0.213 1.213 28 H -0.234 1.234 29 H -0.203 1.203 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.487 -5.802 -11.745 18.098 hybrid contribution -1.829 0.440 0.618 1.980 sum 10.658 -5.362 -11.126 16.314 Atomic orbital electron populations 1.21853 0.96576 1.01610 1.01452 1.21647 0.95760 0.92884 1.04769 1.21326 1.03011 0.96679 0.90785 0.86058 1.22461 1.03308 1.01007 0.92403 1.22169 0.74180 1.00378 0.81844 1.92961 1.85888 1.87952 1.53081 1.92966 1.33101 1.96548 1.96635 1.20994 0.83892 0.80250 0.85280 1.90641 1.23896 1.48204 1.85223 1.49069 1.25151 1.45723 1.12685 1.21355 0.86373 0.92475 1.02405 1.21998 1.01767 0.97330 0.97338 1.21459 0.86720 0.94748 0.93992 0.92476 1.22607 0.97803 0.93774 1.01273 1.21877 0.94373 0.98115 1.01227 1.20420 0.92917 0.86649 0.95424 0.93252 1.23185 1.01589 0.90699 0.83575 1.45117 1.03659 1.01463 1.81940 1.19120 0.84408 0.91738 1.38290 0.90757 1.25231 1.00379 0.95728 1.03994 1.69949 1.30771 1.00530 1.57124 0.85377 0.81557 0.76697 0.77559 1.21309 1.23431 1.20310 0.91621 0.96143 0.91518 0.86968 0.90751 0.88496 0.90848 0.83223 0.89083 0.88584 0.88112 0.94118 0.92178 0.87883 0.89951 0.92063 0.90768 0.94646 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 9.19 71.98 0.66 -3.78 16 2 C -0.11 -2.51 5.49 30.59 0.17 -2.35 16 3 C -0.10 -2.46 1.81 -11.54 -0.02 -2.48 16 4 H 0.12 2.45 5.56 -2.39 -0.01 2.43 16 5 C -0.15 -3.70 4.22 30.60 0.13 -3.57 16 6 C 0.27 4.88 5.17 71.99 0.37 5.25 16 7 F -0.22 -4.85 17.34 44.97 0.78 -4.07 16 8 F -0.21 -4.25 16.93 44.97 0.76 -3.49 16 9 C 0.51 19.36 5.92 87.66 0.52 19.88 16 10 O -0.60 -29.12 14.85 -3.05 -0.05 -29.16 16 11 N -0.60 -22.33 2.91 -814.92 -2.37 -24.71 16 12 C 0.10 2.60 5.07 86.21 0.44 3.04 16 13 C -0.14 -3.98 4.82 29.55 0.14 -3.84 16 14 C 0.14 4.66 4.01 44.60 0.18 4.84 16 15 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 16 C -0.12 -3.14 6.02 31.60 0.19 -2.95 16 17 C -0.12 -3.76 5.78 30.32 0.18 -3.58 16 18 C 0.15 6.71 1.94 43.73 0.09 6.79 16 19 H 0.05 2.65 6.14 -2.39 -0.01 2.64 16 20 C 0.13 6.04 5.86 84.97 0.50 6.54 16 21 N -0.60 -27.69 2.67 -650.45 -1.74 -29.43 16 22 C -0.21 -11.10 10.40 84.04 0.87 -10.22 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 24 C -0.06 -3.42 5.47 84.86 0.46 -2.95 16 25 N -0.93 -55.07 8.14 21.65 0.18 -54.89 16 26 Si 0.96 47.46 29.55 68.60 2.03 49.49 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 29 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.02 0.79 6.31 -2.39 -0.02 0.77 16 32 H 0.07 1.64 6.58 -2.39 -0.02 1.62 16 33 H 0.11 1.48 6.47 -2.39 -0.02 1.46 16 34 H 0.07 1.79 5.67 -2.38 -0.01 1.78 16 35 H 0.10 2.59 6.16 -2.39 -0.01 2.57 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.15 1.64 6.37 -2.39 -0.02 1.63 16 38 H 0.09 2.25 4.06 -2.39 -0.01 2.24 16 39 H 0.10 1.93 5.48 -2.39 -0.01 1.92 16 40 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.33 5.96 -2.39 -0.01 1.31 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 1.97 7.44 -2.39 -0.02 1.95 16 44 H 0.08 2.23 6.22 -2.39 -0.01 2.22 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 4.29 5.29 -2.39 -0.01 4.28 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -73.29 351.72 5.45 -67.83 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.99 Total: 17.80 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.87 Total: 10.63 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.93 Total: -109.03 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 1.54 Total: -7.56 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -73.29 5.45 -67.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699800624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.387 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds