Wall clock time and date at job start Tue Mar 31 2020 15:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46949 * 2 1 4 4 N 1.46502 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99829 * 270.00662 * 4 3 2 6 6 H 1.07994 * 119.99945 * 142.68098 * 5 4 3 7 7 C 1.38811 * 119.99928 * 322.67240 * 5 4 3 8 8 N 1.31622 * 119.99913 * 157.18277 * 7 5 4 9 9 Si 1.86807 * 120.00164 * 337.18211 * 7 5 4 10 10 H 1.48499 * 109.46668 * 95.36050 * 9 7 5 11 11 H 1.48501 * 109.47121 * 215.36140 * 9 7 5 12 12 H 1.48500 * 109.46758 * 335.36180 * 9 7 5 13 13 C 1.46499 * 120.00124 * 90.00108 * 4 3 2 14 14 C 1.52995 * 109.47142 * 267.61735 * 13 4 3 15 15 N 1.46495 * 109.47416 * 178.14134 * 14 13 4 16 16 C 1.34779 * 120.00279 * 179.97438 * 15 14 13 17 17 O 1.21276 * 120.00140 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.50699 * 109.47102 * 180.02562 * 18 16 15 20 20 C 1.34462 * 126.51616 * 265.02153 * 19 18 16 21 21 N 1.36666 * 109.96814 * 180.02562 * 20 19 18 22 22 H 0.96994 * 125.05090 * 180.02562 * 21 20 19 23 23 C 1.37543 * 109.90114 * 359.97438 * 21 20 19 24 24 C 1.38872 * 134.46882 * 180.02562 * 23 21 20 25 25 N 1.31736 * 120.27434 * 179.97438 * 24 23 21 26 26 C 1.32303 * 122.57495 * 0.02562 * 25 24 23 27 27 C 1.36640 * 121.31563 * 0.02562 * 26 25 24 28 28 C 1.39831 * 118.70049 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47268 * 59.99951 * 1 2 3 30 30 H 1.09007 * 109.47199 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47064 * 299.99690 * 1 2 3 32 32 H 1.08999 * 109.46886 * 239.99859 * 2 1 3 33 33 H 1.09004 * 109.46878 * 120.00111 * 2 1 3 34 34 H 1.09004 * 109.46984 * 60.00262 * 3 2 1 35 35 H 1.08997 * 109.47176 * 300.00105 * 3 2 1 36 36 H 0.97005 * 119.99620 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47343 * 147.61912 * 13 4 3 38 38 H 1.09005 * 109.47006 * 27.61362 * 13 4 3 39 39 H 1.09006 * 109.47402 * 58.14442 * 14 13 4 40 40 H 1.09004 * 109.47346 * 298.14730 * 14 13 4 41 41 H 0.96997 * 119.99854 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.47451 * 59.99984 * 18 16 15 43 43 H 1.09004 * 109.46945 * 299.99750 * 18 16 15 44 44 H 1.07995 * 125.01507 * 0.04221 * 20 19 18 45 45 H 1.07997 * 119.86108 * 359.97438 * 24 23 21 46 46 H 1.07998 * 119.34451 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.64863 * 179.70337 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4426 1.1869 6 1 5.1032 0.8756 1.2830 7 6 3.7078 2.1715 2.2656 8 7 4.0639 1.8471 3.4905 9 14 2.5547 3.6130 1.9790 10 1 1.1485 3.1581 2.1231 11 1 2.8354 4.6773 2.9759 12 1 2.7636 4.1493 0.6101 13 6 4.2380 1.4424 -1.2678 14 6 4.5452 0.0011 -1.6791 15 7 5.2391 -0.0012 -2.9693 16 6 5.6119 -1.1678 -3.5320 17 8 5.3723 -2.2158 -2.9704 18 6 6.3262 -1.1701 -4.8589 19 6 6.6286 -2.5898 -5.2641 20 6 7.7764 -3.2562 -5.0484 21 7 7.6839 -4.5216 -5.5563 22 1 8.3867 -5.1890 -5.5203 23 6 6.4457 -4.7083 -6.1253 24 6 5.8214 -5.7677 -6.7707 25 7 4.5895 -5.6390 -7.2194 26 6 3.8953 -4.5209 -7.0841 27 6 4.4269 -3.4255 -6.4639 28 6 5.7316 -3.5025 -5.9668 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.7278 2.3568 4.2444 37 1 5.1712 1.9927 -1.1482 38 1 3.6314 1.9186 -2.0381 39 1 3.6136 -0.5582 -1.7667 40 1 5.1791 -0.4649 -0.9247 41 1 5.4310 0.8369 -3.4182 42 1 7.2576 -0.6107 -4.7711 43 1 5.6924 -0.7044 -5.6135 44 1 8.6432 -2.8514 -4.5473 45 1 6.3480 -6.7009 -6.9054 46 1 2.8887 -4.4727 -7.4724 47 1 3.8522 -2.5166 -6.3637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753146927.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:25 Heat of formation + Delta-G solvation = 22.880507 kcal Electronic energy + Delta-G solvation = -27435.900611 eV Core-core repulsion = 23618.613763 eV Total energy + Delta-G solvation = -3817.286847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.51790 -40.50057 -38.97016 -38.46423 -35.79300 -34.35786 -34.20565 -33.30574 -32.05455 -30.86249 -30.12958 -28.04930 -27.37699 -25.15926 -24.57259 -23.46907 -22.59342 -22.35810 -21.74022 -20.40168 -19.15907 -18.78490 -17.94512 -17.75177 -17.40427 -16.80207 -16.69305 -16.33391 -15.93624 -15.73559 -15.68694 -15.46632 -15.05200 -14.89871 -14.64653 -14.49928 -14.33909 -14.08842 -13.79739 -13.61337 -13.46823 -13.22241 -12.99346 -12.83198 -12.62508 -12.51424 -12.38959 -12.31471 -11.95843 -11.77852 -11.66083 -11.23029 -11.09544 -10.80305 -10.58202 -10.56644 -9.95765 -9.57044 -8.84295 -8.74999 -8.19765 -5.59532 0.01607 0.52468 1.33444 1.43012 1.54820 1.57606 1.80547 2.14801 2.42116 2.44671 2.97492 3.05413 3.48026 3.58293 3.75269 3.78713 3.95464 4.08164 4.12986 4.19561 4.23621 4.28323 4.38455 4.46773 4.56154 4.59284 4.60847 4.63387 4.70408 4.73908 4.76877 4.83372 4.99285 5.03164 5.09707 5.16753 5.25758 5.27394 5.37675 5.51836 5.55361 5.57976 5.63778 5.94803 5.97954 6.18132 6.61000 6.74650 6.98579 7.09561 7.45164 7.62984 8.02952 8.99933 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.002408 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.719597 B =11627.302273 C =12394.689544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.130 3.870 4 N -0.613 5.613 5 C -0.259 4.259 6 H 0.035 0.965 7 C -0.021 4.021 8 N -0.950 5.950 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.311 1.311 12 H -0.249 1.249 13 C 0.143 3.857 14 C 0.116 3.884 15 N -0.714 5.714 16 C 0.504 3.496 17 O -0.590 6.590 18 C -0.052 4.052 19 C -0.186 4.186 20 C 0.090 3.910 21 N -0.569 5.569 22 H 0.435 0.565 23 C 0.021 3.979 24 C 0.107 3.893 25 N -0.497 5.497 26 C 0.039 3.961 27 C -0.133 4.133 28 C -0.084 4.084 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.263 0.737 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.417 0.583 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.209 0.791 45 H 0.179 0.821 46 H 0.170 0.830 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -6.140 -25.025 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.005 3.995 4 N -0.336 5.336 5 C -0.388 4.388 6 H 0.053 0.947 7 C -0.217 4.217 8 N -0.594 5.594 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.240 1.240 12 H -0.173 1.173 13 C 0.017 3.983 14 C -0.011 4.011 15 N -0.368 5.368 16 C 0.291 3.709 17 O -0.470 6.470 18 C -0.092 4.092 19 C -0.193 4.193 20 C -0.040 4.040 21 N -0.173 5.173 22 H 0.276 0.724 23 C -0.089 4.089 24 C -0.061 4.061 25 N -0.206 5.206 26 C -0.110 4.110 27 C -0.153 4.153 28 C -0.096 4.096 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.255 0.745 42 H 0.156 0.844 43 H 0.140 0.860 44 H 0.225 0.775 45 H 0.196 0.804 46 H 0.187 0.813 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.019 -7.558 -24.894 26.496 hybrid contribution 0.305 1.021 1.294 1.677 sum 5.325 -6.537 -23.600 25.060 Atomic orbital electron populations 1.21701 0.94461 1.01987 1.01961 1.22001 0.96375 0.98741 1.00418 1.21410 0.83029 0.95385 0.99657 1.44130 1.01265 1.86326 1.01840 1.18550 1.07879 1.23403 0.89012 0.94710 1.26097 1.00595 1.00379 0.94633 1.70035 1.49373 1.41054 0.98890 0.85790 0.78503 0.79929 0.78154 1.20334 1.23969 1.17304 1.21105 0.97187 0.92672 0.87334 1.21795 0.95244 1.00196 0.83897 1.45874 1.59425 1.09519 1.21938 1.21507 0.78532 0.82865 0.87960 1.90707 1.57013 1.33499 1.65739 1.19984 1.03300 0.93524 0.92392 1.19804 0.94231 0.96862 1.08421 1.22339 1.00412 0.83731 0.97566 1.41611 1.12755 1.13719 1.49235 0.72415 1.19510 0.88548 0.97772 1.03103 1.22230 0.90979 0.97293 0.95613 1.67575 1.07168 1.26614 1.19272 1.22363 1.00739 0.88473 0.99403 1.21426 0.94133 1.00946 0.98808 1.19637 0.94907 0.94501 1.00519 0.90948 0.92124 0.93690 0.92321 0.95335 0.94882 0.90813 0.92848 0.92073 0.90085 0.93621 0.95799 0.74537 0.84430 0.86026 0.77451 0.80446 0.81268 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.91 71.98 0.71 -3.60 16 2 C -0.14 -5.16 6.26 30.59 0.19 -4.96 16 3 C 0.13 5.24 4.55 86.38 0.39 5.64 16 4 N -0.61 -27.46 2.08 -702.02 -1.46 -28.92 16 5 C -0.26 -14.43 9.92 84.03 0.83 -13.60 16 6 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 7 C -0.02 -1.19 5.30 84.86 0.45 -0.74 16 8 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 9 Si 0.95 45.09 25.07 68.60 1.72 46.81 16 10 H -0.28 -12.61 6.66 99.48 0.66 -11.95 16 11 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 12 H -0.25 -10.92 7.11 99.48 0.71 -10.21 16 13 C 0.14 4.91 5.83 86.38 0.50 5.42 16 14 C 0.12 3.98 5.99 86.38 0.52 4.50 16 15 N -0.71 -17.42 5.56 -463.07 -2.57 -19.99 16 16 C 0.50 13.30 7.82 87.66 0.69 13.99 16 17 O -0.59 -22.58 16.03 -3.02 -0.05 -22.63 16 18 C -0.05 -0.82 6.23 29.10 0.18 -0.64 16 19 C -0.19 -3.72 4.80 -18.72 -0.09 -3.81 16 20 C 0.09 1.36 11.74 83.08 0.98 2.34 16 21 N -0.57 -8.27 6.06 -187.59 -1.14 -9.41 16 22 H 0.44 3.10 8.96 -92.71 -0.83 2.27 16 23 C 0.02 0.44 7.33 39.08 0.29 0.72 16 24 C 0.11 2.19 11.25 84.86 0.95 3.14 16 25 N -0.50 -12.05 10.32 -196.33 -2.03 -14.07 16 26 C 0.04 0.88 11.11 84.25 0.94 1.82 16 27 C -0.13 -3.06 10.12 22.28 0.23 -2.83 16 28 C -0.08 -2.00 6.42 -20.20 -0.13 -2.13 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 2.14 6.38 -2.39 -0.02 2.12 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 35 H 0.07 2.46 7.88 -2.39 -0.02 2.45 16 36 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 37 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 38 H 0.08 2.21 7.87 -2.38 -0.02 2.19 16 39 H 0.05 1.73 6.38 -2.38 -0.02 1.71 16 40 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.42 6.56 8.47 -92.71 -0.79 5.78 16 42 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -84.33 387.39 1.75 -82.58 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.66 Total: 19.56 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 7.63 Total: 5.26 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.89 Total: -131.58 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.72 Total: 46.81 kcal Total: -84.33 1.75 -82.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753146927.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.463 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds