Wall clock time and date at job start Tue Mar 31 2020 15:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 N 1.46499 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99589 * 275.31033 * 4 3 2 6 6 H 1.07998 * 120.00568 * 37.57386 * 5 4 3 7 7 C 1.38820 * 119.99535 * 217.57067 * 5 4 3 8 8 N 1.31618 * 119.99894 * 21.44011 * 7 5 4 9 9 Si 1.86797 * 120.00019 * 201.43082 * 7 5 4 10 10 H 1.48506 * 109.47300 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47060 * 120.00332 * 9 7 5 12 12 H 1.48496 * 109.47391 * 240.00765 * 9 7 5 13 13 C 1.46499 * 120.00363 * 95.30857 * 4 3 2 14 14 C 1.53002 * 109.47205 * 270.00558 * 13 4 3 15 15 N 1.46499 * 109.47205 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99591 * 179.97438 * 15 14 13 17 17 O 1.21591 * 120.00209 * 359.97438 * 16 15 14 18 18 C 1.47524 * 119.99589 * 179.97438 * 16 15 14 19 19 C 1.39439 * 120.25336 * 0.02562 * 18 16 15 20 20 C 1.38287 * 120.28449 * 179.72937 * 19 18 16 21 21 C 1.37870 * 120.72536 * 0.51638 * 20 19 18 22 22 C 1.39675 * 120.10701 * 359.46857 * 21 20 19 23 23 N 1.35869 * 133.50884 * 180.30393 * 22 21 20 24 24 C 1.30082 * 109.53559 * 179.97438 * 23 22 21 25 25 C 1.50694 * 124.97668 * 180.02562 * 24 23 22 26 26 N 1.36127 * 110.04850 * 359.97438 * 24 23 22 27 27 H 0.96999 * 126.30487 * 179.97438 * 26 24 23 28 28 C 1.37512 * 107.38339 * 0.02562 * 26 24 23 29 29 H 1.09001 * 109.47042 * 299.99986 * 1 2 3 30 30 H 1.08998 * 109.47449 * 59.99846 * 1 2 3 31 31 H 1.08994 * 109.47539 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47042 * 240.00014 * 2 1 3 33 33 H 1.08996 * 109.47620 * 119.99645 * 2 1 3 34 34 H 1.08992 * 109.47363 * 59.99930 * 3 2 1 35 35 H 1.09005 * 109.47011 * 300.00004 * 3 2 1 36 36 H 0.97008 * 119.99772 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47446 * 150.00048 * 13 4 3 38 38 H 1.09001 * 109.47063 * 29.99894 * 13 4 3 39 39 H 1.08995 * 109.47335 * 59.99422 * 14 13 4 40 40 H 1.09001 * 109.46568 * 299.99639 * 14 13 4 41 41 H 0.96992 * 120.00234 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.85325 * 359.97438 * 19 18 16 43 43 H 1.07998 * 119.63301 * 180.28218 * 20 19 18 44 44 H 1.08004 * 119.94530 * 179.75177 * 21 20 19 45 45 H 1.09004 * 109.47130 * 269.97201 * 25 24 23 46 46 H 1.08997 * 109.47500 * 29.96880 * 25 24 23 47 47 H 1.08996 * 109.47547 * 149.96942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1799 6 1 3.8184 0.6871 1.9619 7 6 5.3624 2.0510 1.3715 8 7 5.6024 3.1239 0.6478 9 14 6.5990 1.4952 2.6565 10 1 6.0969 0.2703 3.3296 11 1 7.8976 1.2011 1.9990 12 1 6.7857 2.5717 3.6621 13 6 4.2370 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8378 15 7 5.2243 0.2823 -3.1010 16 6 5.5614 -0.8259 -3.7900 17 8 5.2580 -1.9231 -3.3630 18 6 6.2986 -0.7075 -5.0624 19 6 6.6497 0.5482 -5.5566 20 6 7.3457 0.6597 -6.7464 21 6 7.6936 -0.4631 -7.4668 22 6 7.3541 -1.7325 -6.9932 23 7 7.5576 -2.9913 -7.4624 24 6 7.0380 -3.8523 -6.6374 25 6 7.0647 -5.3480 -6.8195 26 7 6.4675 -3.2045 -5.5848 27 1 6.0137 -3.6177 -4.8336 28 6 6.6522 -1.8563 -5.7831 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4215 3.6261 0.7820 37 1 5.1894 2.0596 -1.0872 38 1 3.6476 2.1421 -1.9727 39 1 3.5393 -0.3348 -2.0148 40 1 5.0811 -0.4172 -1.1292 41 1 5.4667 1.1576 -3.4414 42 1 6.3804 1.4373 -5.0059 43 1 7.6162 1.6373 -7.1172 44 1 8.2337 -0.3612 -8.3966 45 1 6.1810 -5.6622 -7.3749 46 1 7.9606 -5.6308 -7.3720 47 1 7.0717 -5.8329 -5.8433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753149402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:22 Heat of formation + Delta-G solvation = 38.926531 kcal Electronic energy + Delta-G solvation = -27771.135387 eV Core-core repulsion = 23954.544348 eV Total energy + Delta-G solvation = -3816.591039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33557 -39.43633 -37.24881 -36.52099 -34.37397 -33.20171 -32.92654 -31.60053 -31.01077 -30.31668 -28.02245 -27.80163 -25.60674 -24.18339 -22.90818 -22.42668 -21.13350 -20.93848 -20.47366 -20.03889 -18.05432 -17.64188 -16.73161 -16.31634 -15.76697 -15.55169 -15.22474 -15.09986 -14.71805 -14.38407 -14.22236 -13.97178 -13.62483 -13.42274 -13.30622 -13.02632 -12.94274 -12.83550 -12.66006 -12.17040 -12.06716 -11.70607 -11.61607 -11.54413 -11.23362 -10.98605 -10.78404 -10.77759 -10.47704 -10.42218 -10.37755 -10.12546 -9.92946 -9.83252 -9.60156 -8.72679 -8.54740 -8.47904 -8.24875 -6.67405 -5.88582 -3.47334 0.46429 1.34950 2.36606 2.80963 3.14604 3.29994 3.40047 3.42452 3.45141 3.83458 3.89594 4.41289 4.49620 4.76599 4.78320 4.91628 5.04269 5.14012 5.21406 5.24521 5.28203 5.43210 5.51164 5.58771 5.62882 5.72047 5.80535 5.96425 6.05539 6.09924 6.18424 6.23946 6.24531 6.28218 6.37219 6.48430 6.57961 6.61306 6.62168 6.76827 6.93183 6.94710 7.13739 7.24000 7.47295 7.68775 7.76046 7.80308 8.40435 8.44163 9.09457 9.71311 10.29070 11.11484 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002940 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.470391 B = 9521.089840 C =10251.581081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.288 1.288 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.709 5.709 16 C 0.554 3.446 17 O -0.559 6.559 18 C -0.124 4.124 19 C -0.064 4.064 20 C -0.136 4.136 21 C -0.042 4.042 22 C 0.035 3.965 23 N -0.494 5.494 24 C 0.279 3.721 25 C -0.077 4.077 26 N -0.581 5.581 27 H 0.434 0.566 28 C 0.100 3.900 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.255 0.745 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.074 -8.237 -15.560 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.009 3.991 14 C -0.028 4.028 15 N -0.359 5.359 16 C 0.341 3.659 17 O -0.440 6.440 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.157 4.157 21 C -0.061 4.061 22 C -0.083 4.083 23 N -0.215 5.215 24 C 0.012 3.988 25 C -0.136 4.136 26 N -0.193 5.193 27 H 0.275 0.725 28 C -0.014 4.014 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.233 0.767 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.399 -9.012 -15.953 18.376 hybrid contribution 0.189 0.133 1.642 1.658 sum 1.588 -8.879 -14.311 16.916 Atomic orbital electron populations 1.21720 0.97316 1.00401 1.01030 1.22183 0.93829 1.00952 1.01524 1.20943 0.85029 0.92960 0.98964 1.43601 0.99443 1.84795 1.02044 1.19054 1.05622 1.20439 0.93957 0.92025 1.25183 1.00812 0.94542 0.98108 1.69999 1.25618 1.14761 1.42453 0.86349 0.81497 0.78481 0.81219 1.19983 1.21387 1.21522 1.21064 1.00423 0.91075 0.86499 1.22528 0.94830 1.03025 0.82441 1.46040 1.57136 1.08292 1.24426 1.18146 0.79211 0.84861 0.83673 1.90665 1.56410 1.26614 1.70318 1.19033 1.05823 0.91485 0.96713 1.21214 0.95970 0.95457 0.95791 1.20833 1.00866 0.98565 0.95421 1.20422 0.97607 0.88685 0.99411 1.19055 1.02683 0.93003 0.93558 1.70457 1.24305 0.98269 1.28473 1.23703 0.93794 0.96830 0.84492 1.20381 1.05012 0.84261 1.03903 1.43164 1.48223 1.05109 1.22799 0.72464 1.18581 1.01173 0.84271 0.97333 0.93170 0.93457 0.93828 0.93011 0.92361 0.93524 0.94736 0.93528 0.88322 0.95226 0.92821 0.91604 0.76710 0.84514 0.84489 0.84912 0.89276 0.88507 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.15 0.37 -1.78 16 2 C -0.14 -2.61 6.23 -26.73 -0.17 -2.78 16 3 C 0.15 3.00 5.72 -4.04 -0.02 2.98 16 4 N -0.58 -13.70 2.43 -173.24 -0.42 -14.12 16 5 C -0.26 -6.87 9.45 -15.06 -0.14 -7.01 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.24 11.47 55.49 0.64 -23.60 16 9 Si 0.90 21.14 29.60 -169.99 -5.03 16.11 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 14 C 0.10 1.92 6.00 -4.04 -0.02 1.89 16 15 N -0.71 -11.78 5.51 -61.35 -0.34 -12.12 16 16 C 0.55 9.50 7.76 -12.47 -0.10 9.41 16 17 O -0.56 -11.02 15.29 5.29 0.08 -10.94 16 18 C -0.12 -1.82 5.88 -104.94 -0.62 -2.44 16 19 C -0.06 -0.74 9.53 -39.12 -0.37 -1.11 16 20 C -0.14 -1.37 9.99 -39.70 -0.40 -1.76 16 21 C -0.04 -0.47 10.09 -39.18 -0.40 -0.87 16 22 C 0.04 0.50 7.22 -84.71 -0.61 -0.12 16 23 N -0.49 -6.86 11.28 -8.23 -0.09 -6.95 16 24 C 0.28 3.28 8.08 -154.77 -1.25 2.03 16 25 C -0.08 -0.52 10.51 36.00 0.38 -0.14 16 26 N -0.58 -7.71 6.00 -7.81 -0.05 -7.75 16 27 H 0.43 5.50 7.72 -40.82 -0.32 5.18 16 28 C 0.10 1.49 6.88 -83.77 -0.58 0.91 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.96 6.64 -51.93 -0.34 0.61 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 36 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 38 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 39 H 0.05 1.08 6.64 -51.93 -0.34 0.74 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.40 5.55 6.50 -40.82 -0.27 5.29 16 42 H 0.14 1.28 6.39 -52.49 -0.34 0.95 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -32.27 387.23 -10.32 -42.59 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.90 Total: 8.52 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -4.04 Total: 2.44 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.26 Total: -64.55 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.27 -10.32 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753149402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.515 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds