Wall clock time and date at job start Tue Mar 31 2020 15:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47219 * 2 1 4 4 N 1.46499 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.36935 * 119.99589 * 275.31033 * 4 3 2 6 6 H 1.07998 * 120.00568 * 37.57386 * 5 4 3 7 7 C 1.38820 * 119.99535 * 217.57067 * 5 4 3 8 8 N 1.31618 * 119.99894 * 21.44011 * 7 5 4 9 9 Si 1.86797 * 120.00019 * 201.43082 * 7 5 4 10 10 H 1.48506 * 109.47300 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47060 * 120.00332 * 9 7 5 12 12 H 1.48496 * 109.47391 * 240.00765 * 9 7 5 13 13 C 1.46499 * 120.00363 * 95.30857 * 4 3 2 14 14 C 1.53002 * 109.47205 * 270.00558 * 13 4 3 15 15 N 1.46499 * 109.47205 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99591 * 179.97438 * 15 14 13 17 17 O 1.21591 * 120.00209 * 359.97438 * 16 15 14 18 18 C 1.47524 * 119.99589 * 179.97438 * 16 15 14 19 19 C 1.39439 * 120.25336 * 0.02562 * 18 16 15 20 20 C 1.38287 * 120.28449 * 179.72937 * 19 18 16 21 21 C 1.37870 * 120.72536 * 0.51638 * 20 19 18 22 22 C 1.39675 * 120.10701 * 359.46857 * 21 20 19 23 23 N 1.35869 * 133.50884 * 180.30393 * 22 21 20 24 24 C 1.30082 * 109.53559 * 179.97438 * 23 22 21 25 25 C 1.50694 * 124.97668 * 180.02562 * 24 23 22 26 26 N 1.36127 * 110.04850 * 359.97438 * 24 23 22 27 27 H 0.96999 * 126.30487 * 179.97438 * 26 24 23 28 28 C 1.37512 * 107.38339 * 0.02562 * 26 24 23 29 29 H 1.09001 * 109.47042 * 299.99986 * 1 2 3 30 30 H 1.08998 * 109.47449 * 59.99846 * 1 2 3 31 31 H 1.08994 * 109.47539 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47042 * 240.00014 * 2 1 3 33 33 H 1.08996 * 109.47620 * 119.99645 * 2 1 3 34 34 H 1.08992 * 109.47363 * 59.99930 * 3 2 1 35 35 H 1.09005 * 109.47011 * 300.00004 * 3 2 1 36 36 H 0.97008 * 119.99772 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47446 * 150.00048 * 13 4 3 38 38 H 1.09001 * 109.47063 * 29.99894 * 13 4 3 39 39 H 1.08995 * 109.47335 * 59.99422 * 14 13 4 40 40 H 1.09001 * 109.46568 * 299.99639 * 14 13 4 41 41 H 0.96992 * 120.00234 * 359.97438 * 15 14 13 42 42 H 1.07998 * 119.85325 * 359.97438 * 19 18 16 43 43 H 1.07998 * 119.63301 * 180.28218 * 20 19 18 44 44 H 1.08004 * 119.94530 * 179.75177 * 21 20 19 45 45 H 1.09004 * 109.47130 * 269.97201 * 25 24 23 46 46 H 1.08997 * 109.47500 * 29.96880 * 25 24 23 47 47 H 1.08996 * 109.47547 * 149.96942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1799 6 1 3.8184 0.6871 1.9619 7 6 5.3624 2.0510 1.3715 8 7 5.6024 3.1239 0.6478 9 14 6.5990 1.4952 2.6565 10 1 6.0969 0.2703 3.3296 11 1 7.8976 1.2011 1.9990 12 1 6.7857 2.5717 3.6621 13 6 4.2370 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8378 15 7 5.2243 0.2823 -3.1010 16 6 5.5614 -0.8259 -3.7900 17 8 5.2580 -1.9231 -3.3630 18 6 6.2986 -0.7075 -5.0624 19 6 6.6497 0.5482 -5.5566 20 6 7.3457 0.6597 -6.7464 21 6 7.6936 -0.4631 -7.4668 22 6 7.3541 -1.7325 -6.9932 23 7 7.5576 -2.9913 -7.4624 24 6 7.0380 -3.8523 -6.6374 25 6 7.0647 -5.3480 -6.8195 26 7 6.4675 -3.2045 -5.5848 27 1 6.0137 -3.6177 -4.8336 28 6 6.6522 -1.8563 -5.7831 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4215 3.6261 0.7820 37 1 5.1894 2.0596 -1.0872 38 1 3.6476 2.1421 -1.9727 39 1 3.5393 -0.3348 -2.0148 40 1 5.0811 -0.4172 -1.1292 41 1 5.4667 1.1576 -3.4414 42 1 6.3804 1.4373 -5.0059 43 1 7.6162 1.6373 -7.1172 44 1 8.2337 -0.3612 -8.3966 45 1 6.1810 -5.6622 -7.3749 46 1 7.9606 -5.6308 -7.3720 47 1 7.0717 -5.8329 -5.8433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753149402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:21 Heat of formation + Delta-G solvation = 19.284862 kcal Electronic energy + Delta-G solvation = -27771.987114 eV Core-core repulsion = 23954.544348 eV Total energy + Delta-G solvation = -3817.442766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.28101 -40.77005 -38.35702 -38.10803 -35.85566 -34.62591 -34.18664 -32.74334 -32.28874 -31.50369 -29.53186 -28.61922 -27.35621 -25.62862 -24.22361 -23.39780 -22.59441 -22.00076 -21.91451 -21.48024 -19.24421 -18.72780 -18.37216 -17.46035 -17.07633 -16.87813 -16.71659 -16.29157 -16.05559 -15.87195 -15.62346 -15.19938 -15.05725 -14.64709 -14.41434 -14.34356 -14.21721 -13.84523 -13.52979 -13.35793 -13.12644 -13.06470 -12.96978 -12.82191 -12.66960 -12.54340 -12.52050 -12.23512 -12.05295 -11.89269 -11.78365 -11.69017 -11.48832 -11.32995 -10.96547 -10.55529 -10.16445 -9.43923 -9.23772 -8.60885 -7.87711 -5.50347 -0.50922 0.41014 1.36630 1.40647 1.46053 1.54506 1.90357 2.00195 2.07900 2.48339 2.81729 3.09607 3.19747 3.48373 3.73091 3.80537 3.90122 4.16762 4.19552 4.19771 4.30668 4.34161 4.36071 4.50165 4.55657 4.66170 4.66624 4.70391 4.78295 4.83783 4.91980 4.97711 5.01177 5.13006 5.20884 5.22998 5.24283 5.32279 5.35253 5.38521 5.42006 5.60698 5.64073 5.71815 5.77149 6.30087 6.42314 6.49719 6.74971 7.08011 7.14641 7.80691 8.32899 9.08108 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.002940 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.470391 B = 9521.089840 C =10251.581081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.703 5.703 16 C 0.553 3.447 17 O -0.592 6.592 18 C -0.151 4.151 19 C -0.055 4.055 20 C -0.126 4.126 21 C -0.039 4.039 22 C 0.012 3.988 23 N -0.519 5.519 24 C 0.280 3.720 25 C -0.075 4.075 26 N -0.589 5.589 27 H 0.432 0.568 28 C 0.073 3.927 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.412 0.588 42 H 0.158 0.842 43 H 0.178 0.822 44 H 0.157 0.843 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -8.017 -17.172 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.068 0.932 7 C -0.225 4.225 8 N -0.551 5.551 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.354 5.354 16 C 0.342 3.658 17 O -0.475 6.475 18 C -0.157 4.157 19 C -0.075 4.075 20 C -0.146 4.146 21 C -0.059 4.059 22 C -0.105 4.105 23 N -0.241 5.241 24 C 0.013 3.987 25 C -0.133 4.133 26 N -0.200 5.200 27 H 0.274 0.726 28 C -0.041 4.041 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.249 0.751 42 H 0.176 0.824 43 H 0.195 0.805 44 H 0.175 0.825 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.424 -8.777 -17.588 19.708 hybrid contribution 0.173 0.058 2.064 2.072 sum 1.597 -8.719 -15.523 17.876 Atomic orbital electron populations 1.21654 0.94259 1.01758 1.02030 1.22010 0.96416 0.98817 1.00178 1.21054 0.83331 0.94488 0.99142 1.43830 1.00853 1.85048 1.01946 1.19157 1.06212 1.19914 0.94713 0.93180 1.25722 1.02039 0.94752 0.99942 1.70078 1.25897 1.15435 1.43691 0.85530 0.79433 0.78009 0.79396 1.19901 1.21668 1.21253 1.20929 0.99356 0.91718 0.86235 1.21985 0.94273 1.01245 0.83056 1.45824 1.57008 1.09198 1.23339 1.18592 0.78708 0.84186 0.84343 1.90635 1.57743 1.27802 1.71347 1.18930 1.07770 0.92948 0.96064 1.21571 0.94796 0.94883 0.96248 1.21262 0.99193 0.99928 0.94184 1.20867 0.96807 0.88006 1.00197 1.19527 1.03239 0.94132 0.93631 1.70470 1.25612 0.98603 1.29379 1.24605 0.92197 0.98507 0.83393 1.20611 1.06299 0.81090 1.05335 1.43295 1.48540 1.05011 1.23194 0.72645 1.18900 1.02163 0.84911 0.98117 0.92556 0.92073 0.92324 0.93703 0.94355 0.94582 0.93165 0.93640 0.90683 0.93515 0.93197 0.95072 0.75061 0.82424 0.80481 0.82546 0.87538 0.87419 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.13 -4.79 6.23 30.59 0.19 -4.60 16 3 C 0.15 5.88 5.72 86.38 0.49 6.38 16 4 N -0.60 -28.52 2.43 -702.01 -1.71 -30.23 16 5 C -0.27 -14.45 9.45 84.04 0.79 -13.65 16 6 H 0.05 2.75 7.92 -2.91 -0.02 2.73 16 7 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 8 N -0.91 -50.05 11.47 21.65 0.25 -49.80 16 9 Si 0.95 44.00 29.60 68.60 2.03 46.03 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.14 6.29 5.45 86.38 0.47 6.76 16 14 C 0.12 4.87 6.00 86.38 0.52 5.39 16 15 N -0.70 -23.40 5.51 -466.28 -2.57 -25.97 16 16 C 0.55 19.25 7.76 86.69 0.67 19.92 16 17 O -0.59 -24.15 15.29 -4.00 -0.06 -24.21 16 18 C -0.15 -4.37 5.88 -20.07 -0.12 -4.49 16 19 C -0.06 -1.17 9.53 22.57 0.22 -0.95 16 20 C -0.13 -2.12 9.99 22.19 0.22 -1.90 16 21 C -0.04 -0.81 10.09 22.53 0.23 -0.58 16 22 C 0.01 0.34 7.22 39.40 0.28 0.63 16 23 N -0.52 -14.15 11.28 -179.96 -2.03 -16.18 16 24 C 0.28 6.48 8.08 137.90 1.11 7.60 16 25 C -0.08 -0.92 10.51 71.23 0.75 -0.17 16 26 N -0.59 -15.90 6.00 -178.62 -1.07 -16.97 16 27 H 0.43 11.43 7.72 -92.71 -0.72 10.71 16 28 C 0.07 2.17 6.88 39.26 0.27 2.44 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.65 6.64 -2.39 -0.02 1.63 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 35 H 0.05 1.86 7.83 -2.38 -0.02 1.84 16 36 H 0.25 13.50 8.31 -92.70 -0.77 12.73 16 37 H 0.08 3.69 5.52 -2.39 -0.01 3.68 16 38 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 39 H 0.05 2.05 6.64 -2.39 -0.02 2.03 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.41 11.16 6.50 -92.71 -0.60 10.56 16 42 H 0.16 2.55 6.39 -2.91 -0.02 2.53 16 43 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -71.60 387.23 1.76 -69.84 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.31 Total: 28.80 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.24 Total: 18.69 kcal Atomic # 7 Polarization: -132.01 SS G_CDS: -7.13 Total: -139.15 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.21 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.60 1.76 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753149402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.121 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds