Wall clock time and date at job start Tue Mar 31 2020 15:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46792 * 2 1 4 4 N 1.46503 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00294 * 179.97438 * 4 3 2 6 6 H 1.07991 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31626 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00438 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46757 * 90.00263 * 9 7 5 11 11 H 1.48499 * 109.47188 * 210.00193 * 9 7 5 12 12 H 1.48497 * 109.47060 * 330.00310 * 9 7 5 13 13 N 1.46498 * 109.46871 * 119.99500 * 2 1 3 14 14 C 1.34783 * 120.00183 * 304.29376 * 13 2 1 15 15 O 1.21283 * 119.99855 * 354.99517 * 14 13 2 16 16 C 1.50699 * 120.00206 * 174.98572 * 14 13 2 17 17 C 1.52993 * 109.47192 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.81539 * 51.67077 * 17 16 14 19 19 C 1.55238 * 110.90274 * 288.22005 * 17 16 14 20 20 C 1.54267 * 104.23373 * 203.79080 * 19 17 16 21 21 C 1.53878 * 106.59653 * 23.61092 * 20 19 17 22 22 F 1.39899 * 110.03304 * 240.71516 * 21 20 19 23 23 F 1.39905 * 110.03152 * 119.28499 * 21 20 19 24 24 C 1.54268 * 106.60149 * 0.02562 * 21 20 19 25 25 C 1.52998 * 109.47530 * 239.99610 * 2 1 3 26 26 C 1.53004 * 117.49851 * 12.73897 * 25 2 1 27 27 C 1.52996 * 117.49890 * 304.07952 * 25 2 1 28 28 H 1.08998 * 109.47453 * 300.00378 * 1 2 3 29 29 H 1.09011 * 109.46998 * 60.00744 * 1 2 3 30 30 H 1.09005 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46960 * 299.98964 * 3 2 1 32 32 H 1.08998 * 109.47430 * 59.99608 * 3 2 1 33 33 H 0.97012 * 119.99920 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99618 * 179.97438 * 8 7 5 35 35 H 0.96996 * 119.99878 * 124.29755 * 13 2 1 36 36 H 1.09007 * 109.46595 * 60.00594 * 16 14 13 37 37 H 1.09001 * 109.47438 * 300.01188 * 16 14 13 38 38 H 1.09006 * 110.46334 * 85.10197 * 19 17 16 39 39 H 1.08993 * 110.57977 * 322.53766 * 19 17 16 40 40 H 1.08998 * 110.02935 * 264.32912 * 20 19 17 41 41 H 1.08997 * 110.07060 * 142.91542 * 20 19 17 42 42 H 1.08993 * 110.49055 * 95.06462 * 24 21 20 43 43 H 1.08999 * 110.48491 * 217.57911 * 24 21 20 44 44 H 1.09004 * 115.55231 * 158.40969 * 25 2 1 45 45 H 1.09002 * 117.49736 * 0.02562 * 26 25 2 46 46 H 1.08997 * 117.49867 * 145.02091 * 26 25 2 47 47 H 1.08994 * 117.50102 * 214.97901 * 27 25 2 48 48 H 1.09009 * 117.49785 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5637 -0.0010 7 6 5.5777 2.6284 0.0013 8 7 6.2358 3.7684 0.0014 9 14 6.5117 1.0108 0.0041 10 1 6.7604 0.5804 -1.3953 11 1 7.8087 1.1892 0.7050 12 1 5.7086 -0.0233 0.7047 13 7 2.0182 -0.6905 1.1962 14 6 1.6228 -0.2826 2.4185 15 8 0.9363 0.7106 2.5336 16 6 2.0335 -1.0607 3.6420 17 6 1.4563 -0.3902 4.8902 18 1 0.3845 -0.2247 4.7805 19 6 2.1911 0.9434 5.1925 20 6 1.9682 1.1654 6.7028 21 6 1.6907 -0.2192 7.3143 22 9 0.4199 -0.2389 7.8988 23 9 2.6641 -0.5239 8.2719 24 6 1.7553 -1.2342 6.1544 25 6 2.0401 -0.7213 -1.2491 26 6 1.0276 -1.0159 -2.3578 27 6 1.5587 -2.1545 -1.4834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 3.9900 0.6025 0.0013 34 1 7.2058 3.7684 0.0026 35 1 2.6262 -1.4412 1.1087 36 1 3.1212 -1.0821 3.7107 37 1 1.6539 -2.0798 3.5688 38 1 1.7520 1.7592 4.6181 39 1 3.2549 0.8530 4.9732 40 1 1.1127 1.8218 6.8614 41 1 2.8607 1.6002 7.1527 42 1 2.7486 -1.6784 6.0910 43 1 0.9995 -2.0090 6.2830 44 1 3.0589 -0.4771 -1.5500 45 1 -0.0018 -0.6954 -2.1974 46 1 1.3804 -0.9659 -3.3879 47 1 2.2606 -2.8532 -1.9386 48 1 0.8788 -2.5838 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753521899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:05 Heat of formation + Delta-G solvation = -109.252511 kcal Electronic energy + Delta-G solvation = -29930.941467 eV Core-core repulsion = 25657.235716 eV Total energy + Delta-G solvation = -4273.705751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.02529 -47.10017 -40.32031 -38.46748 -37.08009 -34.83306 -33.55002 -31.88605 -31.00175 -29.86932 -28.73439 -26.27418 -25.68005 -23.65863 -22.36467 -21.86702 -21.16506 -20.96074 -19.86130 -18.95628 -17.76389 -17.68700 -17.27109 -16.82171 -16.14786 -15.79366 -15.20433 -15.12059 -14.68275 -14.56397 -14.37113 -14.07262 -13.91110 -13.63035 -13.44382 -13.33735 -13.08389 -12.85402 -12.55835 -12.35437 -12.27625 -12.07601 -11.95065 -11.75939 -11.63500 -11.50262 -11.17599 -11.03573 -10.99166 -10.92036 -10.81919 -10.74198 -10.68921 -10.33566 -10.25518 -9.96045 -9.57921 -9.34906 -8.82828 -8.69471 -7.16300 -5.74480 -3.08082 2.90830 3.19442 3.30675 3.33818 3.41506 3.61894 3.79911 3.94868 4.05623 4.22810 4.58056 4.63083 4.77469 4.84503 4.85941 4.93681 5.02818 5.04563 5.16858 5.21562 5.24294 5.28433 5.36224 5.40123 5.51188 5.55595 5.56630 5.61051 5.68192 5.76361 5.84236 5.90739 5.90950 5.94020 6.08660 6.12783 6.21045 6.24968 6.30063 6.45238 6.52648 6.82038 7.01120 7.78990 8.03685 8.44493 8.51638 9.24373 9.96380 10.17459 11.44581 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.004012 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.891963 B = 6977.478448 C = 8688.387253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.199 3.801 3 C 0.150 3.850 4 N -0.750 5.750 5 C -0.234 4.234 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.716 5.716 14 C 0.520 3.480 15 O -0.528 6.528 16 C -0.135 4.135 17 C -0.071 4.071 18 H 0.095 0.905 19 C -0.116 4.116 20 C -0.163 4.163 21 C 0.280 3.720 22 F -0.201 7.201 23 F -0.203 7.203 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.169 4.169 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.357 0.643 34 H 0.258 0.742 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -15.272 7.197 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.113 3.887 3 C 0.023 3.977 4 N -0.395 5.395 5 C -0.364 4.364 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.585 5.585 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.367 5.367 14 C 0.306 3.694 15 O -0.405 6.405 16 C -0.175 4.175 17 C -0.090 4.090 18 H 0.113 0.887 19 C -0.153 4.153 20 C -0.201 4.201 21 C 0.244 3.756 22 F -0.182 7.182 23 F -0.184 7.184 24 C -0.196 4.196 25 C -0.174 4.174 26 C -0.207 4.207 27 C -0.219 4.219 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.190 0.810 34 H 0.068 0.932 35 H 0.229 0.771 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.177 -14.307 7.330 20.166 hybrid contribution 1.321 -1.544 0.099 2.035 sum -10.855 -15.851 7.429 20.598 Atomic orbital electron populations 1.22265 0.94380 1.01628 1.03819 1.20073 0.93450 0.93058 0.82122 1.21033 0.85005 0.91753 0.99948 1.42593 1.00804 1.04994 1.91143 1.19073 0.89441 0.85927 1.41957 0.89332 1.24641 0.96069 0.96030 1.02601 1.69700 1.06855 1.23737 1.58190 0.86580 0.79796 0.84677 0.77616 1.21263 1.21847 1.20632 1.45993 1.49628 1.35594 1.05468 1.20335 0.79959 0.84951 0.84169 1.90639 1.38505 1.25169 1.86170 1.21671 1.03089 1.00016 0.92702 1.21865 1.01639 0.94269 0.91190 0.88693 1.22497 1.01428 0.98465 0.92943 1.23198 1.04994 0.93908 0.98032 1.21884 0.71682 0.98317 0.83720 1.93005 1.41177 1.97614 1.86394 1.93006 1.63118 1.94589 1.67641 1.23429 1.05179 0.97679 0.93354 1.22553 1.00503 0.97310 0.97017 1.23068 0.99355 1.02435 0.95811 1.22958 1.04038 0.91370 1.03569 0.89971 0.91517 0.92994 0.95177 0.92948 0.80973 0.93192 0.77099 0.88605 0.88923 0.88680 0.90569 0.88809 0.88816 0.88296 0.89038 0.86701 0.88044 0.88789 0.89003 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 6.98 37.16 0.26 -1.86 16 2 C 0.20 2.92 0.54 -131.82 -0.07 2.85 16 3 C 0.15 2.97 5.03 -4.04 -0.02 2.95 16 4 N -0.75 -17.40 4.84 -59.91 -0.29 -17.69 16 5 C -0.23 -6.62 10.47 -15.06 -0.16 -6.78 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.48 13.97 55.49 0.78 -28.71 16 9 Si 0.88 21.70 27.73 -169.99 -4.71 16.98 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 13 N -0.72 -9.56 4.73 -47.61 -0.22 -9.79 16 14 C 0.52 7.19 7.08 -10.98 -0.08 7.11 16 15 O -0.53 -8.92 11.10 5.55 0.06 -8.86 16 16 C -0.13 -1.35 5.21 -27.89 -0.15 -1.50 16 17 C -0.07 -0.73 2.46 -88.42 -0.22 -0.95 16 18 H 0.09 1.06 7.88 -51.93 -0.41 0.66 16 19 C -0.12 -1.39 5.78 -24.88 -0.14 -1.53 16 20 C -0.16 -1.75 6.50 -25.61 -0.17 -1.92 16 21 C 0.28 3.08 2.57 -25.61 -0.07 3.01 16 22 F -0.20 -2.46 17.04 2.25 0.04 -2.42 16 23 F -0.20 -2.48 17.04 2.25 0.04 -2.44 16 24 C -0.16 -1.43 5.84 -25.05 -0.15 -1.57 16 25 C -0.16 -2.08 4.84 -90.62 -0.44 -2.52 16 26 C -0.17 -1.89 9.64 -26.69 -0.26 -2.14 16 27 C -0.18 -1.87 9.82 -26.70 -0.26 -2.14 16 28 H 0.08 1.22 6.04 -51.93 -0.31 0.91 16 29 H 0.07 0.82 6.78 -51.92 -0.35 0.47 16 30 H 0.05 0.59 6.99 -51.93 -0.36 0.22 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.16 6.32 -51.93 -0.33 0.83 16 33 H 0.36 7.93 4.49 -40.81 -0.18 7.75 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16 35 H 0.40 4.50 8.48 -40.82 -0.35 4.16 16 36 H 0.10 0.92 8.00 -51.92 -0.42 0.51 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.35 7.40 -51.93 -0.38 0.96 16 39 H 0.08 0.94 7.95 -51.93 -0.41 0.53 16 40 H 0.09 0.97 8.02 -51.93 -0.42 0.55 16 41 H 0.09 0.96 8.02 -51.93 -0.42 0.54 16 42 H 0.10 0.79 8.02 -51.93 -0.42 0.38 16 43 H 0.09 0.72 8.11 -51.93 -0.42 0.29 16 44 H 0.11 1.82 7.09 -51.93 -0.37 1.45 16 45 H 0.10 1.05 5.88 -51.93 -0.31 0.75 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 0.88 7.35 -51.92 -0.38 0.50 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -32.91 377.19 -8.15 -41.07 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.52 Total: 13.21 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.01 Total: -7.04 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.26 Total: -56.18 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.06 Total: -8.86 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.08 Total: -4.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.91 -8.15 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753521899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.186 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds