Wall clock time and date at job start Tue Mar 31 2020 15:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46792 * 2 1 4 4 N 1.46503 * 109.47037 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00294 * 179.97438 * 4 3 2 6 6 H 1.07991 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.38809 * 119.99751 * 179.97438 * 5 4 3 8 8 N 1.31626 * 119.99452 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00438 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46757 * 90.00263 * 9 7 5 11 11 H 1.48499 * 109.47188 * 210.00193 * 9 7 5 12 12 H 1.48497 * 109.47060 * 330.00310 * 9 7 5 13 13 N 1.46498 * 109.46871 * 119.99500 * 2 1 3 14 14 C 1.34783 * 120.00183 * 304.29376 * 13 2 1 15 15 O 1.21283 * 119.99855 * 354.99517 * 14 13 2 16 16 C 1.50699 * 120.00206 * 174.98572 * 14 13 2 17 17 C 1.52993 * 109.47192 * 180.02562 * 16 14 13 18 18 H 1.09006 * 110.81539 * 51.67077 * 17 16 14 19 19 C 1.55238 * 110.90274 * 288.22005 * 17 16 14 20 20 C 1.54267 * 104.23373 * 203.79080 * 19 17 16 21 21 C 1.53878 * 106.59653 * 23.61092 * 20 19 17 22 22 F 1.39899 * 110.03304 * 240.71516 * 21 20 19 23 23 F 1.39905 * 110.03152 * 119.28499 * 21 20 19 24 24 C 1.54268 * 106.60149 * 0.02562 * 21 20 19 25 25 C 1.52998 * 109.47530 * 239.99610 * 2 1 3 26 26 C 1.53004 * 117.49851 * 12.73897 * 25 2 1 27 27 C 1.52996 * 117.49890 * 304.07952 * 25 2 1 28 28 H 1.08998 * 109.47453 * 300.00378 * 1 2 3 29 29 H 1.09011 * 109.46998 * 60.00744 * 1 2 3 30 30 H 1.09005 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46960 * 299.98964 * 3 2 1 32 32 H 1.08998 * 109.47430 * 59.99608 * 3 2 1 33 33 H 0.97012 * 119.99920 * 359.97438 * 4 3 2 34 34 H 0.96997 * 119.99618 * 179.97438 * 8 7 5 35 35 H 0.96996 * 119.99878 * 124.29755 * 13 2 1 36 36 H 1.09007 * 109.46595 * 60.00594 * 16 14 13 37 37 H 1.09001 * 109.47438 * 300.01188 * 16 14 13 38 38 H 1.09006 * 110.46334 * 85.10197 * 19 17 16 39 39 H 1.08993 * 110.57977 * 322.53766 * 19 17 16 40 40 H 1.08998 * 110.02935 * 264.32912 * 20 19 17 41 41 H 1.08997 * 110.07060 * 142.91542 * 20 19 17 42 42 H 1.08993 * 110.49055 * 95.06462 * 24 21 20 43 43 H 1.08999 * 110.48491 * 217.57911 * 24 21 20 44 44 H 1.09004 * 115.55231 * 158.40969 * 25 2 1 45 45 H 1.09002 * 117.49736 * 0.02562 * 26 25 2 46 46 H 1.08997 * 117.49867 * 145.02091 * 26 25 2 47 47 H 1.08994 * 117.50102 * 214.97901 * 27 25 2 48 48 H 1.09009 * 117.49785 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5637 -0.0010 7 6 5.5777 2.6284 0.0013 8 7 6.2358 3.7684 0.0014 9 14 6.5117 1.0108 0.0041 10 1 6.7604 0.5804 -1.3953 11 1 7.8087 1.1892 0.7050 12 1 5.7086 -0.0233 0.7047 13 7 2.0182 -0.6905 1.1962 14 6 1.6228 -0.2826 2.4185 15 8 0.9363 0.7106 2.5336 16 6 2.0335 -1.0607 3.6420 17 6 1.4563 -0.3902 4.8902 18 1 0.3845 -0.2247 4.7805 19 6 2.1911 0.9434 5.1925 20 6 1.9682 1.1654 6.7028 21 6 1.6907 -0.2192 7.3143 22 9 0.4199 -0.2389 7.8988 23 9 2.6641 -0.5239 8.2719 24 6 1.7553 -1.2342 6.1544 25 6 2.0401 -0.7213 -1.2491 26 6 1.0276 -1.0159 -2.3578 27 6 1.5587 -2.1545 -1.4834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 3.9900 0.6025 0.0013 34 1 7.2058 3.7684 0.0026 35 1 2.6262 -1.4412 1.1087 36 1 3.1212 -1.0821 3.7107 37 1 1.6539 -2.0798 3.5688 38 1 1.7520 1.7592 4.6181 39 1 3.2549 0.8530 4.9732 40 1 1.1127 1.8218 6.8614 41 1 2.8607 1.6002 7.1527 42 1 2.7486 -1.6784 6.0910 43 1 0.9995 -2.0090 6.2830 44 1 3.0589 -0.4771 -1.5500 45 1 -0.0018 -0.6954 -2.1974 46 1 1.3804 -0.9659 -3.3879 47 1 2.2606 -2.8532 -1.9386 48 1 0.8788 -2.5838 -0.7473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753521899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:04 Heat of formation + Delta-G solvation = -129.985077 kcal Electronic energy + Delta-G solvation = -29931.840499 eV Core-core repulsion = 25657.235716 eV Total energy + Delta-G solvation = -4274.604783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.93211 -48.01717 -41.42371 -39.45738 -38.02739 -36.48587 -34.93335 -33.44354 -32.44479 -31.04780 -29.56839 -27.79416 -26.74199 -24.90860 -23.84798 -23.12861 -22.09399 -21.82315 -20.81427 -20.27546 -19.63659 -18.66943 -18.25376 -17.69476 -17.06707 -16.89665 -16.60247 -16.46646 -16.08029 -15.61468 -15.41640 -15.26871 -14.96924 -14.79276 -14.69536 -14.39348 -14.32276 -14.19899 -13.84580 -13.82947 -13.42690 -13.29881 -13.00475 -12.86009 -12.83203 -12.54837 -12.34358 -12.28161 -12.22704 -12.02849 -11.98685 -11.86275 -11.81184 -11.64292 -11.60212 -11.23129 -11.07749 -10.93855 -10.38277 -9.87332 -9.24871 -8.02247 -5.34822 1.32094 1.39460 1.46952 1.86247 2.21405 2.47695 2.77162 2.94997 3.06520 3.19476 3.28704 3.39204 3.56783 3.74967 3.83883 3.94689 3.99311 4.02574 4.16151 4.20340 4.23624 4.32392 4.39052 4.43264 4.51103 4.65718 4.67909 4.77248 4.80974 4.83774 4.88286 4.91860 4.93464 5.00270 5.04887 5.05509 5.13374 5.23742 5.30866 5.34419 5.34826 5.44900 5.72346 5.77841 6.20658 6.78252 7.08416 7.49335 7.83011 8.07464 9.20118 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.004012 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.891963 B = 6977.478448 C = 8688.387253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.209 3.791 3 C 0.150 3.850 4 N -0.742 5.742 5 C -0.232 4.232 6 H 0.043 0.957 7 C -0.066 4.066 8 N -0.988 5.988 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.243 1.243 13 N -0.712 5.712 14 C 0.509 3.491 15 O -0.567 6.567 16 C -0.127 4.127 17 C -0.066 4.066 18 H 0.084 0.916 19 C -0.117 4.117 20 C -0.162 4.162 21 C 0.275 3.725 22 F -0.209 7.209 23 F -0.209 7.209 24 C -0.146 4.146 25 C -0.181 4.181 26 C -0.169 4.169 27 C -0.150 4.150 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.367 0.633 34 H 0.257 0.743 35 H 0.409 0.591 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 -20.019 7.209 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.123 3.877 3 C 0.023 3.977 4 N -0.388 5.388 5 C -0.363 4.363 6 H 0.061 0.939 7 C -0.257 4.257 8 N -0.638 5.638 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.224 1.224 12 H -0.167 1.167 13 N -0.363 5.363 14 C 0.297 3.703 15 O -0.446 6.446 16 C -0.167 4.167 17 C -0.085 4.085 18 H 0.103 0.897 19 C -0.155 4.155 20 C -0.200 4.200 21 C 0.239 3.761 22 F -0.190 7.190 23 F -0.190 7.190 24 C -0.183 4.183 25 C -0.200 4.200 26 C -0.206 4.206 27 C -0.187 4.187 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.245 0.755 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.125 0.875 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.459 -19.105 7.342 23.961 hybrid contribution 1.323 0.122 0.078 1.331 sum -11.135 -18.983 7.420 23.225 Atomic orbital electron populations 1.22174 0.92911 1.03074 1.02993 1.19795 0.94344 0.89804 0.83748 1.21074 0.82997 0.95843 0.97786 1.42425 1.02097 1.03537 1.90733 1.18982 0.89841 0.86283 1.41206 0.93922 1.25546 0.96998 1.00536 1.02618 1.69916 1.07076 1.26950 1.59903 0.85364 0.77826 0.80094 0.78255 1.20275 1.22384 1.16707 1.45980 1.49755 1.35658 1.04954 1.21117 0.79212 0.84697 0.85264 1.90645 1.40213 1.26957 1.86745 1.21711 1.03749 1.01159 0.90045 1.21789 1.00777 0.93523 0.92403 0.89720 1.22419 1.01006 0.98772 0.93296 1.23160 1.05144 0.94403 0.97286 1.22073 0.71134 0.98855 0.84051 1.92990 1.41726 1.97667 1.86630 1.92992 1.63364 1.94610 1.68054 1.23394 1.06896 0.97091 0.90942 1.22318 0.99873 1.00521 0.97288 1.23190 0.99103 1.02754 0.95572 1.23050 1.03306 0.89680 1.02618 0.92150 0.91087 0.90228 0.96532 0.95861 0.79866 0.93419 0.75516 0.87494 0.84950 0.91898 0.91083 0.88927 0.88531 0.86520 0.87053 0.89202 0.87242 0.88414 0.87511 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 6.98 71.98 0.50 -3.26 16 2 C 0.21 5.89 0.54 3.60 0.00 5.90 16 3 C 0.15 6.13 5.03 86.38 0.43 6.57 16 4 N -0.74 -34.85 4.84 -343.45 -1.66 -36.52 16 5 C -0.23 -13.68 10.47 84.03 0.88 -12.80 16 6 H 0.04 2.84 8.06 -2.92 -0.02 2.82 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.99 -64.44 13.97 21.65 0.30 -64.13 16 9 Si 0.96 44.51 27.73 68.60 1.90 46.41 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 13 N -0.71 -17.32 4.73 -422.92 -2.00 -19.31 16 14 C 0.51 13.31 7.08 87.66 0.62 13.93 16 15 O -0.57 -19.48 11.10 -3.04 -0.03 -19.51 16 16 C -0.13 -2.15 5.21 29.85 0.16 -1.99 16 17 C -0.07 -1.26 2.46 -9.37 -0.02 -1.28 16 18 H 0.08 1.82 7.88 -2.38 -0.02 1.80 16 19 C -0.12 -2.83 5.78 31.79 0.18 -2.65 16 20 C -0.16 -3.47 6.50 31.32 0.20 -3.26 16 21 C 0.27 5.63 2.57 31.32 0.08 5.71 16 22 F -0.21 -4.86 17.04 44.97 0.77 -4.09 16 23 F -0.21 -4.78 17.04 44.97 0.77 -4.01 16 24 C -0.15 -2.18 5.84 31.68 0.18 -2.00 16 25 C -0.18 -4.42 4.84 -10.79 -0.05 -4.47 16 26 C -0.17 -3.25 9.64 30.62 0.30 -2.95 16 27 C -0.15 -2.40 9.82 30.62 0.30 -2.10 16 28 H 0.06 1.78 6.04 -2.39 -0.01 1.77 16 29 H 0.07 1.65 6.78 -2.38 -0.02 1.64 16 30 H 0.08 1.52 6.99 -2.38 -0.02 1.50 16 31 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.02 1.10 6.32 -2.39 -0.02 1.08 16 33 H 0.37 15.78 4.49 -92.70 -0.42 15.37 16 34 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 35 H 0.41 7.70 8.48 -92.71 -0.79 6.91 16 36 H 0.11 1.65 8.00 -2.38 -0.02 1.63 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.92 7.40 -2.38 -0.02 1.90 16 39 H 0.07 1.76 7.95 -2.39 -0.02 1.74 16 40 H 0.09 1.97 8.02 -2.39 -0.02 1.95 16 41 H 0.10 1.98 8.02 -2.39 -0.02 1.96 16 42 H 0.12 1.39 8.02 -2.39 -0.02 1.37 16 43 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 44 H 0.09 2.69 7.09 -2.38 -0.02 2.67 16 45 H 0.11 1.93 5.88 -2.39 -0.01 1.91 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 48 H 0.11 1.45 7.35 -2.38 -0.02 1.43 16 Total: -1.00 -76.42 377.19 4.00 -72.41 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.27 Total: 36.89 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.23 Total: -8.14 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -3.36 Total: -119.96 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.03 Total: -19.51 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 1.53 Total: -8.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Total: -76.42 4.00 -72.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753521899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.572 kcal (2) G-P(sol) polarization free energy of solvation -76.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds