Wall clock time and date at job start Tue Mar 31 2020 15:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47311 * 2 1 4 4 N 1.46502 * 109.46917 * 299.99695 * 3 2 1 5 5 C 1.36939 * 120.00018 * 179.97438 * 4 3 2 6 6 H 1.08005 * 120.00028 * 359.97438 * 5 4 3 7 7 C 1.38814 * 120.00274 * 180.02562 * 5 4 3 8 8 N 1.31622 * 120.00119 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99791 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47457 * 89.99824 * 9 7 5 11 11 H 1.48497 * 109.47065 * 210.00128 * 9 7 5 12 12 H 1.48508 * 109.47036 * 329.99779 * 9 7 5 13 13 N 1.46496 * 109.47352 * 239.99955 * 2 1 3 14 14 C 1.34773 * 120.00376 * 174.05753 * 13 2 1 15 15 O 1.21284 * 119.99824 * 355.57336 * 14 13 2 16 16 C 1.50703 * 120.00087 * 175.56842 * 14 13 2 17 17 C 1.53002 * 109.47065 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.67212 * 54.29847 * 17 16 14 19 19 C 1.54895 * 110.91164 * 290.95294 * 17 16 14 20 20 C 1.54269 * 104.19444 * 203.67033 * 19 17 16 21 21 C 1.53875 * 106.60004 * 23.60771 * 20 19 17 22 22 F 1.39889 * 110.03493 * 240.71633 * 21 20 19 23 23 F 1.39898 * 110.02822 * 119.28444 * 21 20 19 24 24 C 1.54268 * 106.59677 * 0.02562 * 21 20 19 25 25 C 1.52999 * 109.47084 * 119.99542 * 2 1 3 26 26 C 1.53009 * 117.49762 * 122.15638 * 25 2 1 27 27 C 1.53002 * 117.49535 * 53.50473 * 25 2 1 28 28 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46961 * 300.00093 * 1 2 3 30 30 H 1.09001 * 109.46669 * 60.00238 * 1 2 3 31 31 H 1.08997 * 109.47635 * 59.99774 * 3 2 1 32 32 H 1.09000 * 109.47796 * 180.02562 * 3 2 1 33 33 H 0.96999 * 119.99962 * 0.02562 * 4 3 2 34 34 H 0.97001 * 119.99552 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00151 * 354.05541 * 13 2 1 36 36 H 1.08998 * 109.47136 * 60.00292 * 16 14 13 37 37 H 1.08998 * 109.47358 * 300.00094 * 16 14 13 38 38 H 1.08998 * 110.48688 * 322.35010 * 19 17 16 39 39 H 1.09001 * 110.48683 * 84.99421 * 19 17 16 40 40 H 1.08999 * 110.02920 * 264.32822 * 20 19 17 41 41 H 1.08997 * 110.07335 * 142.91811 * 20 19 17 42 42 H 1.09000 * 110.48451 * 217.70992 * 24 21 20 43 43 H 1.09003 * 110.48636 * 95.06621 * 24 21 20 44 44 H 1.08998 * 115.55407 * 267.82871 * 25 2 1 45 45 H 1.09006 * 117.49491 * 0.02562 * 26 25 2 46 46 H 1.08996 * 117.49756 * 145.02083 * 26 25 2 47 47 H 1.09001 * 117.49813 * 214.97876 * 27 25 2 48 48 H 1.09000 * 117.50109 * 359.96719 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1330 -1.1962 5 6 1.8822 3.4442 -1.4127 6 1 2.5024 3.9694 -0.7014 7 6 1.4191 4.0987 -2.5459 8 7 1.7371 5.3589 -2.7542 9 14 0.3446 3.1911 -3.7752 10 1 -1.0829 3.3547 -3.4005 11 1 0.5669 3.7487 -5.1334 12 1 0.6958 1.7481 -3.7689 13 7 2.0184 -0.6906 -1.1961 14 6 3.3375 -0.7101 -1.4716 15 8 4.1119 -0.0892 -0.7746 16 6 3.8504 -1.5036 -2.6457 17 6 5.3709 -1.3583 -2.7343 18 1 5.8394 -1.6322 -1.7891 19 6 5.7656 0.0819 -3.1456 20 6 7.1675 -0.0738 -3.7704 21 6 7.2767 -1.5328 -4.2472 22 9 8.3285 -2.1756 -3.5859 23 9 7.4848 -1.5707 -5.6301 24 6 5.9371 -2.2125 -3.8960 25 6 2.0400 -0.7211 1.2493 26 6 2.9565 -1.9289 1.0432 27 6 1.5144 -2.1335 1.5136 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 0.9938 1.6617 -1.8345 34 1 1.4138 5.8160 -3.5463 35 1 1.3924 -1.1339 -1.7899 36 1 3.3953 -1.1303 -3.5631 37 1 3.5933 -2.5546 -2.5142 38 1 5.0624 0.4753 -3.8796 39 1 5.8079 0.7305 -2.2706 40 1 7.9341 0.1333 -3.0238 41 1 7.2776 0.6046 -4.6164 42 1 6.1043 -3.2385 -3.5682 43 1 5.2619 -2.1896 -4.7515 44 1 2.2319 -0.0855 2.1137 45 1 3.1965 -2.2093 0.0175 46 1 3.7511 -2.0879 1.7722 47 1 1.3608 -2.4272 2.5520 48 1 0.8049 -2.5487 0.7979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753521901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:10 Heat of formation + Delta-G solvation = -122.633346 kcal Electronic energy + Delta-G solvation = -30373.912061 eV Core-core repulsion = 26099.626074 eV Total energy + Delta-G solvation = -4274.285988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.93900 -48.02255 -41.61422 -39.20530 -37.73000 -36.68723 -34.85747 -33.50197 -32.31478 -31.16053 -29.59196 -27.86669 -26.68040 -25.21501 -23.08386 -22.88498 -22.31906 -21.93530 -20.94601 -20.44242 -19.65735 -18.65431 -18.07186 -17.68703 -17.32899 -16.79201 -16.74574 -16.42162 -15.67661 -15.63436 -15.34486 -15.26907 -15.06156 -14.80130 -14.69914 -14.45548 -14.34357 -14.22694 -13.69886 -13.54747 -13.39421 -13.21723 -13.10302 -12.85604 -12.80474 -12.54847 -12.35507 -12.34260 -12.25588 -12.07016 -11.92810 -11.85771 -11.79159 -11.65935 -11.59987 -11.17522 -11.05105 -10.90334 -10.27427 -9.84531 -9.17344 -8.00249 -5.31964 1.32392 1.40357 1.47582 1.92823 2.30340 2.49127 2.77247 2.96160 3.00411 3.18732 3.30988 3.38485 3.57048 3.86776 3.97033 3.99222 4.01946 4.02912 4.07999 4.23171 4.28967 4.32675 4.40028 4.43809 4.53453 4.59076 4.66497 4.75627 4.80163 4.84528 4.92109 4.92878 4.96801 4.98238 5.04998 5.12625 5.23892 5.28214 5.32005 5.33930 5.35405 5.38198 5.75560 5.83276 6.22544 6.81221 7.10931 7.57261 7.85949 8.10422 9.22310 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.004695 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.554276 B = 5961.831226 C = 8078.365981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.207 3.793 3 C 0.143 3.857 4 N -0.741 5.741 5 C -0.227 4.227 6 H 0.041 0.959 7 C -0.068 4.068 8 N -0.989 5.989 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.243 1.243 13 N -0.717 5.717 14 C 0.510 3.490 15 O -0.555 6.555 16 C -0.130 4.130 17 C -0.065 4.065 18 H 0.084 0.916 19 C -0.116 4.116 20 C -0.163 4.163 21 C 0.275 3.725 22 F -0.209 7.209 23 F -0.209 7.209 24 C -0.145 4.145 25 C -0.165 4.165 26 C -0.168 4.168 27 C -0.150 4.150 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.012 0.988 32 H 0.039 0.961 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.410 0.590 36 H 0.107 0.893 37 H 0.132 0.868 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 -24.685 0.166 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.120 3.880 3 C 0.016 3.984 4 N -0.387 5.387 5 C -0.358 4.358 6 H 0.059 0.941 7 C -0.259 4.259 8 N -0.640 5.640 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.167 1.167 13 N -0.371 5.371 14 C 0.299 3.701 15 O -0.433 6.433 16 C -0.169 4.169 17 C -0.083 4.083 18 H 0.103 0.897 19 C -0.153 4.153 20 C -0.201 4.201 21 C 0.239 3.761 22 F -0.190 7.190 23 F -0.190 7.190 24 C -0.182 4.182 25 C -0.185 4.185 26 C -0.205 4.205 27 C -0.187 4.187 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.246 0.754 36 H 0.125 0.875 37 H 0.150 0.850 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.100 0.900 47 H 0.121 0.879 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.125 -24.086 0.716 24.190 hybrid contribution -0.220 0.686 -0.945 1.188 sum 1.905 -23.400 -0.229 23.479 Atomic orbital electron populations 1.21990 0.91767 1.03627 1.02874 1.19816 0.94543 0.89431 0.84171 1.21213 0.98328 0.90870 0.88022 1.42422 1.61943 1.09251 1.25130 1.18957 1.24521 0.87705 1.04596 0.94106 1.25541 1.02983 0.96764 1.00605 1.69919 1.52144 1.12072 1.29892 0.85362 0.78866 0.79431 0.77843 1.20212 1.22568 1.16738 1.46009 1.07873 1.56438 1.26737 1.20938 0.82262 0.80893 0.86051 1.90676 1.56824 1.43780 1.51981 1.21751 0.95272 1.02766 0.97148 1.21714 0.94713 0.93729 0.98194 0.89750 1.22336 0.94540 0.98052 1.00405 1.23169 1.00442 0.93333 1.03172 1.22061 0.86414 0.94525 0.73051 1.92987 1.61434 1.83893 1.80652 1.92989 1.95989 1.97429 1.32605 1.23399 0.92875 1.00947 1.01002 1.22395 1.06462 0.91306 0.98339 1.22942 0.93820 1.01508 1.02244 1.23051 0.96348 0.96374 1.02885 0.88887 0.91063 0.93008 0.97031 0.94307 0.79914 0.93508 0.75380 0.87522 0.85004 0.91418 0.91956 0.89032 0.88744 0.86898 0.86519 0.88867 0.88733 0.89954 0.87931 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.18 71.98 0.59 -2.72 16 2 C 0.21 5.67 0.55 3.60 0.00 5.67 16 3 C 0.14 5.77 4.81 86.38 0.42 6.19 16 4 N -0.74 -34.63 4.98 -343.45 -1.71 -36.34 16 5 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 6 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.99 -64.78 13.97 21.65 0.30 -64.47 16 9 Si 0.96 44.59 27.74 68.60 1.90 46.49 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.24 -9.68 6.52 99.48 0.65 -9.04 16 13 N -0.72 -16.60 4.17 -422.93 -1.76 -18.37 16 14 C 0.51 13.22 4.68 87.66 0.41 13.63 16 15 O -0.55 -19.38 11.02 -3.04 -0.03 -19.41 16 16 C -0.13 -2.21 5.21 29.85 0.16 -2.05 16 17 C -0.06 -1.27 2.46 -9.49 -0.02 -1.30 16 18 H 0.08 1.85 7.97 -2.39 -0.02 1.83 16 19 C -0.12 -3.00 5.68 31.67 0.18 -2.82 16 20 C -0.16 -3.77 6.50 31.32 0.20 -3.57 16 21 C 0.28 5.91 2.57 31.32 0.08 5.99 16 22 F -0.21 -5.01 17.04 44.97 0.77 -4.24 16 23 F -0.21 -4.96 17.04 44.97 0.77 -4.20 16 24 C -0.14 -2.25 5.85 31.68 0.19 -2.07 16 25 C -0.17 -4.02 4.89 -10.79 -0.05 -4.08 16 26 C -0.17 -3.61 8.62 30.62 0.26 -3.35 16 27 C -0.15 -2.51 9.68 30.62 0.30 -2.21 16 28 H 0.09 1.43 6.91 -2.39 -0.02 1.41 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.33 6.86 -2.39 -0.02 1.32 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 1.82 5.63 -2.39 -0.01 1.81 16 33 H 0.37 15.62 4.21 -92.71 -0.39 15.23 16 34 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.41 6.72 8.48 -92.71 -0.79 5.93 16 36 H 0.11 1.64 8.05 -2.39 -0.02 1.62 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.83 7.99 -2.39 -0.02 1.81 16 39 H 0.06 2.06 7.22 -2.39 -0.02 2.04 16 40 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 41 H 0.09 2.13 8.02 -2.39 -0.02 2.11 16 42 H 0.11 1.34 8.11 -2.39 -0.02 1.32 16 43 H 0.12 1.45 8.03 -2.39 -0.02 1.43 16 44 H 0.09 2.53 8.06 -2.39 -0.02 2.51 16 45 H 0.09 1.97 5.21 -2.38 -0.01 1.96 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.11 1.45 7.19 -2.39 -0.02 1.43 16 Total: -1.00 -77.23 375.40 4.03 -73.20 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.25 Total: 36.12 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 4.05 Total: -8.78 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -3.17 Total: -119.18 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.03 Total: -19.41 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 1.53 Total: -8.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -77.23 4.03 -73.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753521901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.435 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds