Wall clock time and date at job start Tue Mar 31 2020 15:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46951 * 2 1 4 4 N 1.46497 * 109.47308 * 300.00205 * 3 2 1 5 5 C 1.36934 * 119.99988 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00243 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99822 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00363 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99892 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47301 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47048 * 119.99926 * 9 7 5 12 12 H 1.48496 * 109.47284 * 239.99864 * 9 7 5 13 13 N 1.46495 * 109.47008 * 240.00154 * 2 1 3 14 14 C 1.34778 * 119.99938 * 175.42703 * 13 2 1 15 15 O 1.21281 * 119.99942 * 355.85197 * 14 13 2 16 16 C 1.50701 * 120.00093 * 175.84791 * 14 13 2 17 17 C 1.53000 * 109.46753 * 60.00245 * 16 14 13 18 18 C 1.53007 * 109.47016 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47100 * 300.00117 * 18 17 16 20 20 F 1.39905 * 109.46956 * 299.99893 * 19 18 17 21 21 F 1.39895 * 109.46910 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.46921 * 60.00137 * 19 18 17 23 23 C 1.52997 * 109.47152 * 180.02562 * 16 14 13 24 24 C 1.53000 * 109.47250 * 120.00010 * 2 1 3 25 25 C 1.52997 * 117.49747 * 121.78882 * 24 2 1 26 26 C 1.53003 * 117.49828 * 53.13289 * 24 2 1 27 27 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47003 * 299.99632 * 1 2 3 29 29 H 1.08995 * 109.47419 * 59.99995 * 1 2 3 30 30 H 1.08999 * 109.46966 * 60.00346 * 3 2 1 31 31 H 1.09000 * 109.46920 * 180.02562 * 3 2 1 32 32 H 0.97000 * 120.00132 * 0.02562 * 4 3 2 33 33 H 0.97003 * 120.00455 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00100 * 355.43250 * 13 2 1 35 35 H 1.09000 * 109.47234 * 300.00847 * 16 14 13 36 36 H 1.09000 * 109.47403 * 300.00024 * 17 16 14 37 37 H 1.08999 * 109.47418 * 59.99960 * 17 16 14 38 38 H 1.09000 * 109.47144 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47024 * 60.00570 * 18 17 16 40 40 H 1.09000 * 109.47042 * 179.97438 * 22 19 18 41 41 H 1.08999 * 109.47674 * 60.00013 * 22 19 18 42 42 H 1.08999 * 109.46936 * 299.99989 * 23 16 14 43 43 H 1.08999 * 109.46798 * 60.00294 * 23 16 14 44 44 H 1.08994 * 115.55114 * 267.46443 * 24 2 1 45 45 H 1.08999 * 117.50067 * 0.02562 * 25 24 2 46 46 H 1.09007 * 117.49716 * 145.01910 * 25 24 2 47 47 H 1.08995 * 117.50242 * 214.97986 * 26 24 2 48 48 H 1.09003 * 117.50010 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8820 3.4443 -1.4125 6 1 2.5029 3.9692 -0.7016 7 6 1.4197 4.0985 -2.5461 8 7 0.6634 3.4588 -3.4128 9 14 1.8709 5.8870 -2.8417 10 1 2.7247 6.3727 -1.7280 11 1 2.6139 6.0050 -4.1220 12 1 0.6334 6.7049 -2.9104 13 7 2.0183 -0.6906 -1.1962 14 6 3.3399 -0.7337 -1.4571 15 8 4.1187 -0.1377 -0.7434 16 6 3.8500 -1.5226 -2.6354 17 6 3.2369 -0.9693 -3.9234 18 6 3.7552 -1.7698 -5.1199 19 6 5.2791 -1.6536 -5.1896 20 9 5.6381 -0.3095 -5.3370 21 9 5.7531 -2.3860 -6.2832 22 6 5.8922 -2.2070 -3.9016 23 6 5.3740 -1.4075 -2.7050 24 6 2.0401 -0.7212 1.2492 25 6 2.9496 -1.9341 1.0428 26 6 1.5079 -2.1303 1.5182 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 0.9937 1.6619 -1.8344 33 1 0.3400 3.9161 -4.2048 34 1 1.3905 -1.1166 -1.8004 35 1 3.5699 -2.5697 -2.5204 36 1 2.1511 -1.0516 -3.8735 37 1 3.5169 0.0778 -4.0385 38 1 3.3180 -1.3759 -6.0374 39 1 3.4754 -2.8170 -5.0050 40 1 6.9779 -2.1247 -3.9514 41 1 5.6125 -3.2542 -3.7867 42 1 5.6544 -0.3605 -2.8200 43 1 5.8104 -1.8019 -1.7874 44 1 2.2378 -0.0848 2.1117 45 1 3.1850 -2.2179 0.0171 46 1 3.7456 -2.0958 1.7698 47 1 1.3559 -2.4210 2.5576 48 1 0.7941 -2.5433 0.8054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753524991.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:58 Heat of formation + Delta-G solvation = -128.053283 kcal Electronic energy + Delta-G solvation = -30868.230358 eV Core-core repulsion = 26593.709344 eV Total energy + Delta-G solvation = -4274.521014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.95545 -47.96376 -41.72666 -39.20722 -37.50901 -36.55903 -34.88350 -33.27826 -32.08990 -31.56982 -30.49618 -27.62782 -25.59275 -24.69435 -24.12620 -23.06383 -22.88495 -21.90090 -20.80330 -20.23012 -19.25740 -18.44023 -18.04052 -17.88020 -17.21578 -17.04397 -16.89845 -16.26881 -15.78954 -15.38259 -15.27193 -15.12133 -14.93862 -14.72406 -14.55740 -14.38777 -14.25807 -13.93554 -13.59330 -13.49083 -13.41835 -13.30162 -13.05675 -12.98696 -12.83016 -12.72001 -12.57840 -12.35892 -12.23335 -12.18374 -12.08851 -11.94700 -11.76951 -11.69212 -11.15659 -11.11188 -11.03572 -10.89066 -10.25579 -9.82542 -8.88271 -7.94874 -5.18759 1.41884 1.43603 1.52484 1.85725 2.32844 2.54380 2.81889 3.00656 3.13689 3.34356 3.39564 3.42901 3.70118 3.79381 3.88748 3.96049 4.05502 4.09136 4.10954 4.21712 4.31415 4.33919 4.40936 4.43476 4.59479 4.60627 4.70278 4.81408 4.85380 4.87416 4.90803 4.94682 4.99303 5.00740 5.05428 5.13218 5.19517 5.25952 5.31576 5.36175 5.37803 5.40796 5.48353 5.83027 6.28900 6.79558 7.36432 7.53570 8.12573 8.41426 9.28047 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.005476 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.075182 B = 5111.929408 C = 7652.069726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.139 3.861 4 N -0.726 5.726 5 C -0.238 4.238 6 H 0.058 0.942 7 C -0.067 4.067 8 N -0.959 5.959 9 Si 0.961 3.039 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.288 1.288 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.563 6.563 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.146 4.146 19 C 0.272 3.728 20 F -0.223 7.223 21 F -0.209 7.209 22 C -0.145 4.145 23 C -0.095 4.095 24 C -0.167 4.167 25 C -0.166 4.166 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.009 0.991 31 H 0.029 0.971 32 H 0.378 0.622 33 H 0.250 0.750 34 H 0.407 0.593 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.040 0.960 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -21.409 2.318 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.122 3.878 3 C 0.012 3.988 4 N -0.369 5.369 5 C -0.370 4.370 6 H 0.076 0.924 7 C -0.260 4.260 8 N -0.611 5.611 9 Si 0.791 3.209 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.215 1.215 13 N -0.360 5.360 14 C 0.309 3.691 15 O -0.442 6.442 16 C -0.122 4.122 17 C -0.144 4.144 18 C -0.184 4.184 19 C 0.236 3.764 20 F -0.204 7.204 21 F -0.190 7.190 22 C -0.183 4.183 23 C -0.133 4.133 24 C -0.186 4.186 25 C -0.204 4.204 26 C -0.186 4.186 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.212 0.788 33 H 0.059 0.941 34 H 0.243 0.757 35 H 0.160 0.840 36 H 0.114 0.886 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.123 0.877 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.622 -20.806 2.864 21.312 hybrid contribution 0.078 1.776 -0.976 2.028 sum 3.701 -19.031 1.887 19.479 Atomic orbital electron populations 1.21914 0.91941 1.03215 1.02605 1.19801 0.94382 0.89591 0.84003 1.21209 0.97608 0.91259 0.88729 1.42262 1.60920 1.09549 1.24191 1.19510 1.24214 0.89252 1.04016 0.92378 1.25315 1.01430 1.01691 0.97532 1.69758 1.40883 1.37051 1.13377 0.85253 0.77211 0.81240 0.77195 1.20053 1.22310 1.21459 1.45934 1.07299 1.56551 1.26210 1.20726 0.82376 0.80424 0.85621 1.90660 1.56903 1.45073 1.51526 1.21471 0.96519 1.02151 0.92046 1.21402 1.01889 0.98724 0.92402 1.22510 0.90244 1.05333 1.00312 1.21655 0.96151 0.73144 0.85459 1.92989 1.93632 1.37357 1.96447 1.92978 1.90484 1.77318 1.58253 1.22513 1.02392 1.03019 0.90348 1.21216 0.93647 1.00028 0.98414 1.22402 1.06597 0.91361 0.98279 1.22945 0.93918 1.01349 1.02159 1.23060 0.96282 0.96370 1.02906 0.89168 0.91326 0.93375 0.97342 0.95299 0.78841 0.94120 0.75652 0.83959 0.88632 0.94615 0.89573 0.84637 0.89026 0.85029 0.94146 0.89125 0.88749 0.88966 0.89653 0.87677 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.18 71.98 0.59 -3.19 16 2 C 0.21 6.45 0.55 3.61 0.00 6.45 16 3 C 0.14 6.07 4.84 86.38 0.42 6.49 16 4 N -0.73 -37.42 5.18 -343.46 -1.78 -39.19 16 5 C -0.24 -13.96 9.99 84.03 0.84 -13.12 16 6 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.96 -58.26 13.06 21.65 0.28 -57.98 16 9 Si 0.96 48.26 29.55 68.60 2.03 50.29 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 12 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 13 N -0.71 -19.37 4.12 -422.92 -1.74 -21.11 16 14 C 0.52 15.71 4.16 87.66 0.36 16.07 16 15 O -0.56 -22.06 12.26 -3.03 -0.04 -22.10 16 16 C -0.10 -2.19 2.53 -11.54 -0.03 -2.22 16 17 C -0.11 -2.56 4.98 30.60 0.15 -2.41 16 18 C -0.15 -2.76 5.45 30.60 0.17 -2.59 16 19 C 0.27 6.21 2.10 30.59 0.06 6.28 16 20 F -0.22 -7.17 16.03 44.97 0.72 -6.45 16 21 F -0.21 -4.92 17.06 44.97 0.77 -4.15 16 22 C -0.15 -2.55 5.45 30.58 0.17 -2.39 16 23 C -0.09 -2.21 4.37 30.58 0.13 -2.08 16 24 C -0.17 -4.43 4.86 -10.79 -0.05 -4.48 16 25 C -0.17 -3.86 8.53 30.62 0.26 -3.60 16 26 C -0.15 -2.76 9.68 30.62 0.30 -2.46 16 27 H 0.09 1.75 6.89 -2.39 -0.02 1.73 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.57 6.86 -2.39 -0.02 1.55 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.03 1.45 5.72 -2.39 -0.01 1.43 16 32 H 0.38 19.69 6.35 -92.71 -0.59 19.10 16 33 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 34 H 0.41 8.84 7.78 -92.71 -0.72 8.12 16 35 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 2.05 7.48 -2.39 -0.02 2.03 16 37 H 0.03 1.24 7.80 -2.39 -0.02 1.22 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.04 1.29 7.76 -2.39 -0.02 1.27 16 43 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 44 H 0.09 2.72 8.06 -2.39 -0.02 2.70 16 45 H 0.09 2.12 5.16 -2.39 -0.01 2.10 16 46 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.11 1.66 7.17 -2.39 -0.02 1.64 16 Total: -1.00 -75.73 374.30 3.75 -71.98 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.33 Total: 35.45 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.84 Total: -6.73 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -3.24 Total: -118.28 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 9 Polarization: -12.09 SS G_CDS: 1.49 Total: -10.60 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -75.73 3.75 -71.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753524991.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.075 kcal (2) G-P(sol) polarization free energy of solvation -75.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds