Wall clock time and date at job start Tue Mar 31 2020 15:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50696 * 119.99962 * 2 1 4 4 H 1.09001 * 109.47426 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46701 * 239.99487 * 3 2 1 6 6 C 1.53003 * 109.46891 * 65.00414 * 5 3 2 7 7 C 1.53003 * 109.47128 * 119.99765 * 3 2 1 8 8 C 1.50700 * 109.46992 * 294.99737 * 7 3 2 9 9 O 1.21282 * 119.99906 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99668 * 179.97438 * 8 7 3 11 11 C 1.46499 * 119.99771 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47095 * 180.02562 * 11 10 8 13 13 H 1.09008 * 109.52311 * 55.08192 * 12 11 10 14 14 C 1.53187 * 109.49880 * 294.99696 * 12 11 10 15 15 N 1.46923 * 108.77790 * 185.41232 * 14 12 11 16 16 C 1.36937 * 120.63106 * 233.59113 * 15 14 12 17 17 H 1.07999 * 120.00670 * 28.08923 * 16 15 14 18 18 C 1.38814 * 119.99803 * 208.08899 * 16 15 14 19 19 N 1.31623 * 120.00319 * 17.64661 * 18 16 15 20 20 Si 1.86803 * 119.99964 * 197.64539 * 18 16 15 21 21 H 1.48504 * 109.46901 * 94.06968 * 20 18 16 22 22 H 1.48504 * 109.47303 * 214.06646 * 20 18 16 23 23 H 1.48501 * 109.46970 * 334.06889 * 20 18 16 24 24 C 1.46928 * 118.73762 * 53.86377 * 15 14 12 25 25 C 1.53628 * 108.54047 * 306.09155 * 24 15 14 26 26 C 1.53041 * 109.49771 * 175.15859 * 12 11 10 27 27 F 1.39899 * 109.46406 * 301.34178 * 26 12 11 28 28 F 1.39904 * 109.45712 * 61.31348 * 26 12 11 29 29 H 1.08000 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99749 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99665 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47172 * 184.99770 * 5 3 2 33 33 H 1.08997 * 109.47523 * 304.99703 * 5 3 2 34 34 H 1.09004 * 109.46986 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47144 * 299.99417 * 6 5 3 36 36 H 1.09002 * 109.47283 * 59.99677 * 6 5 3 37 37 H 1.08996 * 109.46956 * 174.99418 * 7 3 2 38 38 H 1.09001 * 109.47042 * 55.00164 * 7 3 2 39 39 H 0.97002 * 120.00470 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.47524 * 60.00031 * 11 10 8 41 41 H 1.09006 * 109.47421 * 299.99674 * 11 10 8 42 42 H 1.09007 * 109.58222 * 65.62652 * 14 12 11 43 43 H 1.08993 * 109.58972 * 305.20328 * 14 12 11 44 44 H 0.96997 * 120.00013 * 180.02562 * 19 18 16 45 45 H 1.08992 * 109.58852 * 65.92480 * 24 15 14 46 46 H 1.09003 * 109.58716 * 186.35598 * 24 15 14 47 47 H 1.08996 * 109.63897 * 294.86506 * 25 24 15 48 48 H 1.09003 * 109.45427 * 174.73892 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3860 -1.2492 6 6 2.0565 1.4305 -2.4953 7 6 2.9432 1.3862 1.2493 8 6 2.0697 1.4301 2.4766 9 8 0.8626 1.3991 2.3632 10 7 2.6301 1.5028 3.7001 11 6 1.7810 1.5450 4.8932 12 6 2.6606 1.6262 6.1425 13 1 3.3335 2.4798 6.0595 14 6 3.4811 0.3394 6.2747 15 7 4.2202 0.3780 7.5439 16 6 5.5763 0.1895 7.5676 17 1 6.1737 0.4560 6.7083 18 6 6.1832 -0.3443 8.6962 19 7 5.4610 -0.9840 9.5916 20 14 8.0250 -0.1546 8.9443 21 1 8.2911 1.0447 9.7786 22 1 8.5594 -1.3606 9.6265 23 1 8.6885 0.0028 7.6251 24 6 3.4757 0.6167 8.7880 25 6 2.6561 1.9061 8.6270 26 6 1.7759 1.7918 7.3803 27 9 1.0018 2.9497 7.2485 28 9 0.9349 0.6806 7.5041 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5542 2.2877 -1.2056 33 1 3.5907 0.5104 -1.2950 34 1 2.6832 1.4886 -3.3853 35 1 1.4456 0.5289 -2.5390 36 1 1.4091 2.3062 -2.4494 37 1 3.5541 2.2877 1.2056 38 1 3.5906 0.5105 1.2952 39 1 3.5955 1.5272 3.7908 40 1 1.1701 0.6434 4.9366 41 1 1.1335 2.4207 4.8477 42 1 4.1839 0.2672 5.4446 43 1 2.8134 -0.5221 6.2668 44 1 5.8851 -1.3566 10.3804 45 1 2.8076 -0.2225 8.9808 46 1 4.1750 0.7278 9.6167 47 1 3.3289 2.7570 8.5205 48 1 2.0263 2.0479 9.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754744827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:09 Heat of formation + Delta-G solvation = -118.639978 kcal Electronic energy + Delta-G solvation = -29435.222828 eV Core-core repulsion = 25161.110006 eV Total energy + Delta-G solvation = -4274.112822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.53023 -46.48325 -39.85722 -37.57555 -36.75008 -34.87574 -32.72987 -31.85974 -31.24211 -30.35893 -29.93394 -26.07607 -25.23241 -24.28888 -22.44985 -21.81428 -21.41331 -20.44370 -19.65201 -19.50750 -17.41990 -16.81560 -16.74698 -16.26944 -15.76436 -15.48380 -15.34389 -15.14681 -14.78670 -14.61203 -14.23609 -13.98758 -13.67377 -13.44301 -13.34541 -13.24017 -13.08303 -12.80101 -12.75221 -12.33280 -12.22766 -12.01905 -11.68313 -11.60401 -11.52987 -11.47391 -11.35258 -11.25456 -10.98040 -10.86454 -10.64142 -10.61849 -10.52890 -10.09825 -9.94590 -9.90004 -9.65271 -9.15850 -8.91291 -8.63789 -6.92874 -5.96397 -3.41087 2.41231 2.76440 3.20125 3.27970 3.35371 3.37042 4.20619 4.35064 4.56602 4.60514 4.63812 4.69359 4.73679 4.89636 5.05333 5.08412 5.19227 5.23554 5.25542 5.33307 5.35446 5.41177 5.51054 5.57232 5.64138 5.70018 5.72250 5.76229 5.92055 5.92320 6.02269 6.03564 6.14027 6.14475 6.24959 6.31745 6.41413 6.48083 6.68171 6.70959 6.90358 7.07684 7.42162 7.58247 7.62990 8.24082 8.32841 9.00130 9.62695 10.18285 11.12669 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003060 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.749211 B = 9147.339944 C =10662.347885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.726 5.726 11 C 0.127 3.873 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.154 3.846 15 N -0.590 5.590 16 C -0.262 4.262 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.171 3.829 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.214 7.214 28 F -0.199 7.199 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.257 0.743 45 H 0.033 0.967 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 5.902 -15.807 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.296 3.704 9 O -0.411 6.411 10 N -0.379 5.379 11 C 0.002 3.998 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.027 3.973 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.263 3.737 27 F -0.195 7.195 28 F -0.180 7.180 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.420 5.770 -15.726 17.606 hybrid contribution 1.201 0.057 0.476 1.293 sum -4.219 5.828 -15.250 16.862 Atomic orbital electron populations 1.23683 0.95937 1.01237 0.99234 1.22639 0.96002 0.97106 1.01281 1.20147 0.96531 0.97074 0.92480 0.90150 1.21547 0.97864 1.02008 0.93993 1.21760 0.99822 1.02119 0.97127 1.21726 0.98726 1.04474 0.92633 1.20646 0.89225 0.76015 0.84497 1.90706 1.14811 1.48971 1.86647 1.46007 1.10600 1.75545 1.05730 1.21271 0.92847 1.02793 0.82872 1.22963 0.97853 1.04965 0.91832 0.88090 1.20900 0.93937 0.91560 0.90951 1.44118 1.04184 1.82541 1.00375 1.19169 0.81637 1.36392 1.01924 0.91266 1.25095 0.98133 0.97028 0.99037 1.70027 1.35097 1.36596 1.12456 0.86236 0.84901 0.77314 0.78040 1.21316 1.21669 1.20277 1.20929 0.93806 0.89795 0.91030 1.23345 0.99072 1.05052 0.94431 1.21036 0.82830 0.71138 0.98669 1.92955 1.78350 1.51015 1.97166 1.92967 1.74040 1.53880 1.97155 0.88712 0.89268 0.88051 0.91824 0.91762 0.92973 0.92389 0.92864 0.88801 0.88692 0.76291 0.90876 0.91263 0.91631 0.95023 0.93309 0.94908 0.88170 0.89577 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 13.22 29.01 0.38 -1.47 16 2 C -0.15 -1.62 6.76 -36.03 -0.24 -1.86 16 3 C -0.04 -0.41 1.82 -91.77 -0.17 -0.58 16 4 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 5 C -0.12 -0.87 5.39 -26.73 -0.14 -1.01 16 6 C -0.15 -1.10 9.73 37.16 0.36 -0.74 16 7 C -0.14 -1.25 5.16 -27.88 -0.14 -1.40 16 8 C 0.51 6.64 7.58 -10.99 -0.08 6.56 16 9 O -0.53 -8.78 14.17 5.56 0.08 -8.70 16 10 N -0.73 -9.24 5.33 -60.29 -0.32 -9.56 16 11 C 0.13 1.91 4.83 -4.04 -0.02 1.89 16 12 C -0.15 -2.51 2.03 -90.50 -0.18 -2.70 16 13 H 0.10 1.57 8.14 -51.92 -0.42 1.14 16 14 C 0.15 2.92 5.39 -3.71 -0.02 2.90 16 15 N -0.59 -13.56 2.99 -172.06 -0.51 -14.07 16 16 C -0.26 -6.59 9.58 -15.06 -0.14 -6.73 16 17 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 18 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 19 N -0.90 -24.67 11.22 55.49 0.62 -24.05 16 20 Si 0.91 20.35 29.59 -169.99 -5.03 15.32 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.17 3.81 5.13 -3.48 -0.02 3.80 16 25 C -0.18 -3.27 5.64 -26.38 -0.15 -3.42 16 26 C 0.30 5.32 1.63 -26.69 -0.04 5.28 16 27 F -0.21 -3.72 16.41 2.25 0.04 -3.68 16 28 F -0.20 -3.86 15.72 2.25 0.04 -3.82 16 29 H 0.09 1.13 7.83 -52.49 -0.41 0.71 16 30 H 0.09 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.34 7.70 -40.82 -0.31 4.02 16 40 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 41 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 42 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 43 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 46 H 0.10 2.48 6.06 -51.93 -0.31 2.16 16 47 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -29.35 386.26 -7.99 -37.34 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.02 Total: 4.81 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.70 Total: 0.59 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: -0.21 Total: -47.68 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.07 Total: -7.50 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.35 -7.99 -37.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.297 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds