Wall clock time and date at job start Tue Mar 31 2020 15:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50696 * 119.99962 * 2 1 4 4 H 1.09001 * 109.47426 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46701 * 239.99487 * 3 2 1 6 6 C 1.53003 * 109.46891 * 65.00414 * 5 3 2 7 7 C 1.53003 * 109.47128 * 119.99765 * 3 2 1 8 8 C 1.50700 * 109.46992 * 294.99737 * 7 3 2 9 9 O 1.21282 * 119.99906 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99668 * 179.97438 * 8 7 3 11 11 C 1.46499 * 119.99771 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47095 * 180.02562 * 11 10 8 13 13 H 1.09008 * 109.52311 * 55.08192 * 12 11 10 14 14 C 1.53187 * 109.49880 * 294.99696 * 12 11 10 15 15 N 1.46923 * 108.77790 * 185.41232 * 14 12 11 16 16 C 1.36937 * 120.63106 * 233.59113 * 15 14 12 17 17 H 1.07999 * 120.00670 * 28.08923 * 16 15 14 18 18 C 1.38814 * 119.99803 * 208.08899 * 16 15 14 19 19 N 1.31623 * 120.00319 * 17.64661 * 18 16 15 20 20 Si 1.86803 * 119.99964 * 197.64539 * 18 16 15 21 21 H 1.48504 * 109.46901 * 94.06968 * 20 18 16 22 22 H 1.48504 * 109.47303 * 214.06646 * 20 18 16 23 23 H 1.48501 * 109.46970 * 334.06889 * 20 18 16 24 24 C 1.46928 * 118.73762 * 53.86377 * 15 14 12 25 25 C 1.53628 * 108.54047 * 306.09155 * 24 15 14 26 26 C 1.53041 * 109.49771 * 175.15859 * 12 11 10 27 27 F 1.39899 * 109.46406 * 301.34178 * 26 12 11 28 28 F 1.39904 * 109.45712 * 61.31348 * 26 12 11 29 29 H 1.08000 * 119.99665 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99749 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99665 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47172 * 184.99770 * 5 3 2 33 33 H 1.08997 * 109.47523 * 304.99703 * 5 3 2 34 34 H 1.09004 * 109.46986 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47144 * 299.99417 * 6 5 3 36 36 H 1.09002 * 109.47283 * 59.99677 * 6 5 3 37 37 H 1.08996 * 109.46956 * 174.99418 * 7 3 2 38 38 H 1.09001 * 109.47042 * 55.00164 * 7 3 2 39 39 H 0.97002 * 120.00470 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.47524 * 60.00031 * 11 10 8 41 41 H 1.09006 * 109.47421 * 299.99674 * 11 10 8 42 42 H 1.09007 * 109.58222 * 65.62652 * 14 12 11 43 43 H 1.08993 * 109.58972 * 305.20328 * 14 12 11 44 44 H 0.96997 * 120.00013 * 180.02562 * 19 18 16 45 45 H 1.08992 * 109.58852 * 65.92480 * 24 15 14 46 46 H 1.09003 * 109.58716 * 186.35598 * 24 15 14 47 47 H 1.08996 * 109.63897 * 294.86506 * 25 24 15 48 48 H 1.09003 * 109.45427 * 174.73892 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3860 -1.2492 6 6 2.0565 1.4305 -2.4953 7 6 2.9432 1.3862 1.2493 8 6 2.0697 1.4301 2.4766 9 8 0.8626 1.3991 2.3632 10 7 2.6301 1.5028 3.7001 11 6 1.7810 1.5450 4.8932 12 6 2.6606 1.6262 6.1425 13 1 3.3335 2.4798 6.0595 14 6 3.4811 0.3394 6.2747 15 7 4.2202 0.3780 7.5439 16 6 5.5763 0.1895 7.5676 17 1 6.1737 0.4560 6.7083 18 6 6.1832 -0.3443 8.6962 19 7 5.4610 -0.9840 9.5916 20 14 8.0250 -0.1546 8.9443 21 1 8.2911 1.0447 9.7786 22 1 8.5594 -1.3606 9.6265 23 1 8.6885 0.0028 7.6251 24 6 3.4757 0.6167 8.7880 25 6 2.6561 1.9061 8.6270 26 6 1.7759 1.7918 7.3803 27 9 1.0018 2.9497 7.2485 28 9 0.9349 0.6806 7.5041 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5542 2.2877 -1.2056 33 1 3.5907 0.5104 -1.2950 34 1 2.6832 1.4886 -3.3853 35 1 1.4456 0.5289 -2.5390 36 1 1.4091 2.3062 -2.4494 37 1 3.5541 2.2877 1.2056 38 1 3.5906 0.5105 1.2952 39 1 3.5955 1.5272 3.7908 40 1 1.1701 0.6434 4.9366 41 1 1.1335 2.4207 4.8477 42 1 4.1839 0.2672 5.4446 43 1 2.8134 -0.5221 6.2668 44 1 5.8851 -1.3566 10.3804 45 1 2.8076 -0.2225 8.9808 46 1 4.1750 0.7278 9.6167 47 1 3.3289 2.7570 8.5205 48 1 2.0263 2.0479 9.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754744827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:08 Heat of formation + Delta-G solvation = -134.412391 kcal Electronic energy + Delta-G solvation = -29435.906771 eV Core-core repulsion = 25161.110006 eV Total energy + Delta-G solvation = -4274.796765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.00084 -47.96002 -40.89579 -39.02480 -37.68722 -36.21277 -34.36497 -32.65477 -32.47825 -32.02025 -30.97231 -27.39135 -26.94843 -25.27210 -24.01745 -22.96741 -22.46811 -21.53493 -21.06606 -20.40553 -18.99614 -18.32780 -17.99578 -17.55984 -16.99820 -16.95112 -16.63812 -16.47969 -15.98290 -15.57014 -15.44089 -15.34561 -14.84753 -14.71605 -14.69897 -14.43499 -14.34780 -14.26952 -13.84389 -13.80128 -13.26266 -13.17261 -13.08999 -13.03418 -12.97969 -12.75724 -12.59039 -12.25844 -12.16305 -12.13519 -12.01311 -11.90277 -11.65226 -11.63771 -11.36265 -11.30031 -10.83955 -10.57031 -10.12511 -9.94139 -8.80984 -7.90507 -5.37360 1.51543 1.53796 1.56079 1.61986 1.76444 2.14323 2.50317 2.81276 3.17312 3.23294 3.30471 3.52105 3.58633 3.83810 3.87761 3.92405 3.95168 4.10264 4.25904 4.39772 4.43866 4.48296 4.51295 4.55332 4.63017 4.67786 4.71058 4.76593 4.84767 4.88116 4.89824 5.04184 5.08909 5.10008 5.11464 5.22116 5.28229 5.40923 5.44071 5.49939 5.58070 5.66991 5.86200 6.07511 6.33975 6.60606 7.08414 7.33491 7.76282 8.29333 9.17655 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003060 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.749211 B = 9147.339944 C =10662.347885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.062 0.938 5 C -0.111 4.111 6 C -0.152 4.152 7 C -0.128 4.128 8 C 0.505 3.495 9 O -0.573 6.573 10 N -0.719 5.719 11 C 0.138 3.862 12 C -0.137 4.137 13 H 0.119 0.881 14 C 0.156 3.844 15 N -0.605 5.605 16 C -0.263 4.263 17 H 0.082 0.918 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.287 1.287 22 H -0.302 1.302 23 H -0.262 1.262 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.297 3.703 27 F -0.208 7.208 28 F -0.211 7.211 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.012 0.988 44 H 0.251 0.749 45 H 0.003 0.997 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 7.278 -17.572 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.062 4.062 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.168 4.168 8 C 0.293 3.707 9 O -0.452 6.452 10 N -0.373 5.373 11 C 0.013 3.987 12 C -0.158 4.158 13 H 0.138 0.862 14 C 0.030 3.970 15 N -0.328 5.328 16 C -0.392 4.392 17 H 0.100 0.900 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.186 1.186 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.189 7.189 28 F -0.193 7.193 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.252 0.748 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.030 0.970 44 H 0.060 0.940 45 H 0.021 0.979 46 H 0.092 0.908 47 H 0.119 0.881 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.633 7.168 -17.526 19.281 hybrid contribution 0.579 -0.392 0.999 1.219 sum -3.054 6.775 -16.527 18.121 Atomic orbital electron populations 1.23693 0.96548 1.00880 1.00899 1.22886 0.95886 0.98183 0.99796 1.20154 0.96579 0.95639 0.93829 0.91923 1.21521 0.97550 1.03184 0.92570 1.21769 0.99916 1.01478 0.97797 1.21785 0.98224 1.06749 0.90021 1.21390 0.89196 0.74765 0.85330 1.90703 1.16753 1.50609 1.87154 1.45932 1.10996 1.75330 1.04998 1.20976 0.92685 1.01660 0.83373 1.22767 0.97465 1.03951 0.91654 0.86247 1.20950 0.93943 0.92204 0.89892 1.44352 1.04091 1.82710 1.01604 1.19587 0.82805 1.34859 1.01967 0.90004 1.25841 1.01897 0.97384 0.99221 1.70184 1.36602 1.38361 1.12992 0.85238 0.80439 0.76397 0.78243 1.21351 1.22919 1.18641 1.20647 0.93008 0.90800 0.90426 1.23171 0.99052 1.03018 0.95563 1.21110 0.82786 0.70931 0.99088 1.92965 1.78205 1.50566 1.97143 1.92951 1.74451 1.54620 1.97231 0.89930 0.88972 0.87166 0.90333 0.90800 0.91786 0.93290 0.93339 0.85935 0.86735 0.74821 0.92870 0.91619 0.89707 0.96975 0.94003 0.97857 0.90785 0.88131 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 13.22 67.77 0.90 -3.31 16 2 C -0.15 -3.03 6.76 25.64 0.17 -2.86 16 3 C -0.04 -0.73 1.82 -11.54 -0.02 -0.76 16 4 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 5 C -0.11 -1.34 5.39 30.60 0.16 -1.18 16 6 C -0.15 -1.97 9.73 71.98 0.70 -1.27 16 7 C -0.13 -1.96 5.16 29.85 0.15 -1.81 16 8 C 0.50 12.18 7.58 87.66 0.66 12.84 16 9 O -0.57 -18.51 14.17 -3.04 -0.04 -18.56 16 10 N -0.72 -16.59 5.33 -463.06 -2.47 -19.05 16 11 C 0.14 3.98 4.83 86.38 0.42 4.40 16 12 C -0.14 -4.20 2.03 -10.72 -0.02 -4.22 16 13 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 14 C 0.16 5.73 5.39 86.36 0.47 6.20 16 15 N -0.61 -27.41 2.99 -698.27 -2.09 -29.50 16 16 C -0.26 -12.90 9.58 84.03 0.81 -12.09 16 17 H 0.08 3.75 7.89 -2.91 -0.02 3.73 16 18 C -0.05 -2.46 4.90 84.86 0.42 -2.04 16 19 N -0.94 -52.45 11.22 21.65 0.24 -52.21 16 20 Si 0.97 41.48 29.59 68.60 2.03 43.51 16 21 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C 0.18 8.02 5.13 86.51 0.44 8.46 16 25 C -0.17 -5.96 5.64 30.82 0.17 -5.78 16 26 C 0.30 10.17 1.63 30.62 0.05 10.22 16 27 F -0.21 -6.83 16.41 44.97 0.74 -6.09 16 28 F -0.21 -8.16 15.72 44.97 0.71 -7.45 16 29 H 0.08 2.06 7.83 -2.91 -0.02 2.03 16 30 H 0.09 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.11 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.05 0.71 7.38 -2.39 -0.02 0.70 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.41 7.51 7.70 -92.71 -0.71 6.80 16 40 H 0.05 1.76 7.97 -2.39 -0.02 1.74 16 41 H 0.07 1.98 7.63 -2.38 -0.02 1.96 16 42 H 0.08 2.76 7.13 -2.38 -0.02 2.74 16 43 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 44 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 45 H 0.00 0.17 7.92 -2.39 -0.02 0.15 16 46 H 0.07 3.75 6.06 -2.39 -0.01 3.73 16 47 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 48 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -64.21 386.26 4.83 -59.38 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.23 Total: 23.14 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.48 Total: 6.82 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -4.31 Total: -100.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.04 Total: -18.56 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 1.44 Total: -13.54 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -64.21 4.83 -59.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.028 kcal (2) G-P(sol) polarization free energy of solvation -64.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds