Wall clock time and date at job start Tue Mar 31 2020 15:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00187 * 2 1 4 4 H 1.08997 * 109.46798 * 0.27866 * 3 2 1 5 5 C 1.53001 * 109.47140 * 240.27280 * 3 2 1 6 6 C 1.53004 * 109.46605 * 65.00238 * 5 3 2 7 7 C 1.52999 * 109.46776 * 120.27468 * 3 2 1 8 8 C 1.50702 * 109.47000 * 184.99839 * 7 3 2 9 9 O 1.21280 * 119.99815 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00041 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00058 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47233 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.49690 * 304.92798 * 12 11 10 14 14 C 1.53186 * 109.50251 * 64.99581 * 12 11 10 15 15 N 1.46926 * 108.77652 * 174.58738 * 14 12 11 16 16 C 1.36935 * 120.62924 * 126.37074 * 15 14 12 17 17 H 1.07995 * 120.00165 * 331.83198 * 16 15 14 18 18 C 1.38814 * 119.99901 * 151.82530 * 16 15 14 19 19 N 1.31620 * 120.00064 * 343.09470 * 18 16 15 20 20 Si 1.86806 * 119.99864 * 163.09021 * 18 16 15 21 21 H 1.48499 * 109.47122 * 60.00619 * 20 18 16 22 22 H 1.48503 * 109.47033 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47173 * 300.00179 * 20 18 16 24 24 C 1.46926 * 118.74062 * 306.38918 * 15 14 12 25 25 C 1.53196 * 108.77005 * 53.61052 * 24 15 14 26 26 C 1.53037 * 109.31340 * 305.36123 * 25 24 15 27 27 F 1.39896 * 109.46232 * 301.34759 * 26 25 24 28 28 F 1.39901 * 109.45967 * 181.38584 * 26 25 24 29 29 H 1.08002 * 119.99991 * 359.72022 * 1 2 3 30 30 H 1.08002 * 120.00504 * 179.72435 * 1 2 3 31 31 H 1.07999 * 120.00043 * 180.27399 * 2 1 3 32 32 H 1.08998 * 109.46831 * 184.99543 * 5 3 2 33 33 H 1.08991 * 109.46919 * 305.00287 * 5 3 2 34 34 H 1.08995 * 109.46978 * 60.00184 * 6 5 3 35 35 H 1.08998 * 109.46402 * 179.97438 * 6 5 3 36 36 H 1.08994 * 109.47332 * 299.99511 * 6 5 3 37 37 H 1.09006 * 109.47564 * 305.00217 * 7 3 2 38 38 H 1.09006 * 109.47219 * 65.00554 * 7 3 2 39 39 H 0.96999 * 120.00393 * 0.02562 * 10 8 7 40 40 H 1.09005 * 109.46682 * 300.00213 * 11 10 8 41 41 H 1.08999 * 109.47204 * 59.99840 * 11 10 8 42 42 H 1.08996 * 109.58933 * 294.38066 * 14 12 11 43 43 H 1.09009 * 109.58472 * 54.80209 * 14 12 11 44 44 H 0.97003 * 119.99495 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58605 * 173.39551 * 24 15 14 46 46 H 1.08998 * 109.58807 * 293.82527 * 24 15 14 47 47 H 1.09003 * 109.50013 * 65.32069 * 25 24 15 48 48 H 1.09002 * 109.49462 * 185.40856 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 6 2.9380 1.3891 -1.2527 6 6 2.0460 1.4367 -2.4949 7 6 2.9483 1.3831 1.2458 8 6 3.6075 2.7367 1.3098 9 8 3.3906 3.5583 0.4445 10 7 4.4373 3.0346 2.3292 11 6 5.0777 4.3508 2.3917 12 6 5.9626 4.4287 3.6374 13 1 5.3689 4.1933 4.5207 14 6 7.1124 3.4244 3.5116 15 7 8.0227 3.6025 4.6511 16 6 8.3621 2.5400 5.4455 17 1 7.6786 1.7119 5.5609 18 6 9.5849 2.5274 6.1024 19 7 10.5456 3.3420 5.7205 20 14 9.8670 1.3542 7.5285 21 1 9.6971 -0.0446 7.0597 22 1 11.2436 1.5366 8.0547 23 1 8.8844 1.6383 8.6049 24 6 8.5614 4.9422 4.9223 25 6 7.3952 5.9295 5.0324 26 6 6.5365 5.8414 3.7687 27 9 7.3238 6.1305 2.6491 28 9 5.4884 6.7643 3.8522 29 1 -0.5400 0.9353 0.0046 30 1 -0.5401 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0045 32 1 3.5490 2.2907 -1.2094 33 1 3.5851 0.5136 -1.3033 34 1 1.3989 2.3123 -2.4442 35 1 2.6690 1.4970 -3.3873 36 1 1.4350 0.5352 -2.5382 37 1 2.3367 1.2342 2.1358 38 1 3.7135 0.6083 1.1971 39 1 4.6105 2.3777 3.0215 40 1 5.6895 4.4997 1.5019 41 1 4.3123 5.1253 2.4402 42 1 6.7139 2.4100 3.5173 43 1 7.6524 3.6019 2.5814 44 1 11.4000 3.3333 6.1798 45 1 9.1188 4.9292 5.8590 46 1 9.2195 5.2434 4.1072 47 1 6.7884 5.6803 5.9029 48 1 7.7846 6.9421 5.1378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754744828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:13 Heat of formation + Delta-G solvation = -119.351106 kcal Electronic energy + Delta-G solvation = -29386.838223 eV Core-core repulsion = 25112.694564 eV Total energy + Delta-G solvation = -4274.143659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.54104 -46.49254 -39.96854 -37.60528 -36.77495 -34.93219 -32.74716 -31.95040 -31.27623 -30.37817 -29.95415 -26.06879 -25.23274 -24.23874 -22.46981 -21.98667 -21.39779 -20.38911 -19.79144 -19.54201 -17.43086 -16.83612 -16.79030 -16.28767 -15.73346 -15.49983 -15.38645 -14.97755 -14.90883 -14.85385 -14.27518 -13.96647 -13.65289 -13.42529 -13.29282 -13.25137 -13.08563 -12.83415 -12.80549 -12.56192 -12.23707 -12.02180 -11.70172 -11.61942 -11.56776 -11.34774 -11.28872 -11.24192 -10.86570 -10.84595 -10.72008 -10.64276 -10.57172 -10.10027 -9.96663 -9.83128 -9.65188 -9.48900 -8.98260 -8.63768 -6.92479 -5.96468 -3.41641 2.05154 2.67610 3.18072 3.28410 3.35289 3.35652 4.19555 4.34639 4.52239 4.57161 4.62207 4.67741 4.85742 4.88840 5.01447 5.05851 5.18204 5.19664 5.25116 5.31453 5.36966 5.40259 5.51391 5.59036 5.62972 5.65104 5.78261 5.83884 5.90727 5.99640 6.00187 6.13570 6.20105 6.24504 6.26666 6.30776 6.39769 6.41072 6.48040 6.59359 6.67128 7.07673 7.42229 7.52732 7.62013 8.24169 8.26022 9.00028 9.62485 10.18033 11.12638 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.003024 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.576208 B = 9257.073599 C =10728.189154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.724 5.724 11 C 0.125 3.875 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.154 3.846 15 N -0.590 5.590 16 C -0.264 4.264 17 H 0.069 0.931 18 C 0.008 3.992 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.214 7.214 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.258 0.742 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.085 0.915 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -3.209 -7.407 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.161 4.161 3 C -0.064 4.064 4 H 0.100 0.900 5 C -0.160 4.160 6 C -0.204 4.204 7 C -0.175 4.175 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.376 5.376 11 C 0.001 3.999 12 C -0.177 4.177 13 H 0.119 0.881 14 C 0.026 3.974 15 N -0.312 5.312 16 C -0.393 4.393 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.263 3.737 27 F -0.180 7.180 28 F -0.195 7.195 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.238 0.762 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.051 0.949 47 H 0.104 0.896 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.033 -2.581 -7.981 17.215 hybrid contribution 0.278 -0.740 1.066 1.327 sum -14.756 -3.321 -6.915 16.631 Atomic orbital electron populations 1.23846 0.95953 1.01725 1.01600 1.22953 0.95917 0.98093 0.99167 1.20156 0.96858 0.95601 0.93798 0.90036 1.21669 0.98073 1.03026 0.93274 1.21724 0.99742 1.01452 0.97528 1.21708 1.00292 0.95161 1.00366 1.20654 0.78777 0.89577 0.81136 1.90673 1.62312 1.50380 1.38361 1.46011 1.47331 1.17018 1.27263 1.21301 0.95761 0.84750 0.98102 1.22969 1.00036 0.95307 0.99360 0.88065 1.20905 0.89252 0.95385 0.91814 1.44078 1.53023 1.04990 1.29089 1.19104 0.98754 0.99530 1.21878 0.91366 1.25096 0.94796 0.98727 1.00587 1.70009 1.03356 1.40321 1.40512 0.86327 0.77044 0.80637 0.82478 1.20736 1.21529 1.20871 1.20842 0.90403 0.81622 1.02729 1.23274 1.00774 1.03167 0.94662 1.21031 0.80357 0.86341 0.85931 1.92965 1.75212 1.94487 1.55356 1.92956 1.60087 1.69746 1.96688 0.88647 0.88614 0.87362 0.89660 0.92517 0.92877 0.93079 0.93045 0.88777 0.88563 0.76161 0.90766 0.91154 0.91625 0.94986 0.93237 0.88157 0.94947 0.89590 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 29.02 0.42 -1.06 16 2 C -0.14 -1.16 7.75 -36.02 -0.28 -1.44 16 3 C -0.05 -0.44 1.80 -91.77 -0.17 -0.60 16 4 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 5 C -0.12 -1.29 5.18 -26.73 -0.14 -1.42 16 6 C -0.15 -1.40 9.73 37.16 0.36 -1.04 16 7 C -0.14 -1.25 5.16 -27.88 -0.14 -1.40 16 8 C 0.51 6.53 7.51 -10.99 -0.08 6.45 16 9 O -0.54 -8.74 13.99 5.56 0.08 -8.66 16 10 N -0.72 -9.02 5.33 -60.29 -0.32 -9.34 16 11 C 0.13 1.86 4.83 -4.04 -0.02 1.84 16 12 C -0.16 -2.49 2.03 -90.50 -0.18 -2.68 16 13 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.15 2.89 5.40 -3.71 -0.02 2.87 16 15 N -0.59 -13.48 2.99 -172.32 -0.52 -14.00 16 16 C -0.26 -6.60 9.58 -15.06 -0.14 -6.75 16 17 H 0.07 1.64 7.88 -52.49 -0.41 1.23 16 18 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 19 N -0.90 -24.60 11.20 55.49 0.62 -23.98 16 20 Si 0.91 20.29 29.59 -169.99 -5.03 15.26 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.17 3.79 5.10 -3.71 -0.02 3.77 16 25 C -0.18 -3.24 5.62 -26.61 -0.15 -3.39 16 26 C 0.30 5.27 1.63 -26.69 -0.04 5.23 16 27 F -0.20 -3.81 15.72 2.25 0.04 -3.77 16 28 F -0.21 -3.69 16.41 2.25 0.04 -3.65 16 29 H 0.10 0.73 7.83 -52.49 -0.41 0.32 16 30 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.08 1.11 5.88 -51.93 -0.31 0.80 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.44 7.38 -51.93 -0.38 0.06 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.25 7.70 -40.82 -0.31 3.94 16 40 H 0.07 1.21 7.97 -51.93 -0.41 0.80 16 41 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 42 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 43 H 0.03 0.65 7.92 -51.92 -0.41 0.24 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.10 2.47 6.06 -51.93 -0.31 2.16 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 48 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -28.97 385.57 -7.88 -36.85 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.90 Total: 4.99 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.70 Total: 0.49 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.22 Total: -47.32 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.07 Total: -7.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.97 -7.88 -36.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.500 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds