Wall clock time and date at job start Tue Mar 31 2020 15:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 120.00187 * 2 1 4 4 H 1.08997 * 109.46798 * 0.27866 * 3 2 1 5 5 C 1.53001 * 109.47140 * 240.27280 * 3 2 1 6 6 C 1.53004 * 109.46605 * 65.00238 * 5 3 2 7 7 C 1.52999 * 109.46776 * 120.27468 * 3 2 1 8 8 C 1.50702 * 109.47000 * 184.99839 * 7 3 2 9 9 O 1.21280 * 119.99815 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00041 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00058 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47233 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.49690 * 304.92798 * 12 11 10 14 14 C 1.53186 * 109.50251 * 64.99581 * 12 11 10 15 15 N 1.46926 * 108.77652 * 174.58738 * 14 12 11 16 16 C 1.36935 * 120.62924 * 126.37074 * 15 14 12 17 17 H 1.07995 * 120.00165 * 331.83198 * 16 15 14 18 18 C 1.38814 * 119.99901 * 151.82530 * 16 15 14 19 19 N 1.31620 * 120.00064 * 343.09470 * 18 16 15 20 20 Si 1.86806 * 119.99864 * 163.09021 * 18 16 15 21 21 H 1.48499 * 109.47122 * 60.00619 * 20 18 16 22 22 H 1.48503 * 109.47033 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47173 * 300.00179 * 20 18 16 24 24 C 1.46926 * 118.74062 * 306.38918 * 15 14 12 25 25 C 1.53196 * 108.77005 * 53.61052 * 24 15 14 26 26 C 1.53037 * 109.31340 * 305.36123 * 25 24 15 27 27 F 1.39896 * 109.46232 * 301.34759 * 26 25 24 28 28 F 1.39901 * 109.45967 * 181.38584 * 26 25 24 29 29 H 1.08002 * 119.99991 * 359.72022 * 1 2 3 30 30 H 1.08002 * 120.00504 * 179.72435 * 1 2 3 31 31 H 1.07999 * 120.00043 * 180.27399 * 2 1 3 32 32 H 1.08998 * 109.46831 * 184.99543 * 5 3 2 33 33 H 1.08991 * 109.46919 * 305.00287 * 5 3 2 34 34 H 1.08995 * 109.46978 * 60.00184 * 6 5 3 35 35 H 1.08998 * 109.46402 * 179.97438 * 6 5 3 36 36 H 1.08994 * 109.47332 * 299.99511 * 6 5 3 37 37 H 1.09006 * 109.47564 * 305.00217 * 7 3 2 38 38 H 1.09006 * 109.47219 * 65.00554 * 7 3 2 39 39 H 0.96999 * 120.00393 * 0.02562 * 10 8 7 40 40 H 1.09005 * 109.46682 * 300.00213 * 11 10 8 41 41 H 1.08999 * 109.47204 * 59.99840 * 11 10 8 42 42 H 1.08996 * 109.58933 * 294.38066 * 14 12 11 43 43 H 1.09009 * 109.58472 * 54.80209 * 14 12 11 44 44 H 0.97003 * 119.99495 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58605 * 173.39551 * 24 15 14 46 46 H 1.08998 * 109.58807 * 293.82527 * 24 15 14 47 47 H 1.09003 * 109.50013 * 65.32069 * 25 24 15 48 48 H 1.09002 * 109.49462 * 185.40856 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0050 5 6 2.9380 1.3891 -1.2527 6 6 2.0460 1.4367 -2.4949 7 6 2.9483 1.3831 1.2458 8 6 3.6075 2.7367 1.3098 9 8 3.3906 3.5583 0.4445 10 7 4.4373 3.0346 2.3292 11 6 5.0777 4.3508 2.3917 12 6 5.9626 4.4287 3.6374 13 1 5.3689 4.1933 4.5207 14 6 7.1124 3.4244 3.5116 15 7 8.0227 3.6025 4.6511 16 6 8.3621 2.5400 5.4455 17 1 7.6786 1.7119 5.5609 18 6 9.5849 2.5274 6.1024 19 7 10.5456 3.3420 5.7205 20 14 9.8670 1.3542 7.5285 21 1 9.6971 -0.0446 7.0597 22 1 11.2436 1.5366 8.0547 23 1 8.8844 1.6383 8.6049 24 6 8.5614 4.9422 4.9223 25 6 7.3952 5.9295 5.0324 26 6 6.5365 5.8414 3.7687 27 9 7.3238 6.1305 2.6491 28 9 5.4884 6.7643 3.8522 29 1 -0.5400 0.9353 0.0046 30 1 -0.5401 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0045 32 1 3.5490 2.2907 -1.2094 33 1 3.5851 0.5136 -1.3033 34 1 1.3989 2.3123 -2.4442 35 1 2.6690 1.4970 -3.3873 36 1 1.4350 0.5352 -2.5382 37 1 2.3367 1.2342 2.1358 38 1 3.7135 0.6083 1.1971 39 1 4.6105 2.3777 3.0215 40 1 5.6895 4.4997 1.5019 41 1 4.3123 5.1253 2.4402 42 1 6.7139 2.4100 3.5173 43 1 7.6524 3.6019 2.5814 44 1 11.4000 3.3333 6.1798 45 1 9.1188 4.9292 5.8590 46 1 9.2195 5.2434 4.1072 47 1 6.7884 5.6803 5.9029 48 1 7.7846 6.9421 5.1378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754744828.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:11 Heat of formation + Delta-G solvation = -134.789466 kcal Electronic energy + Delta-G solvation = -29387.507680 eV Core-core repulsion = 25112.694564 eV Total energy + Delta-G solvation = -4274.813117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.00152 -47.95874 -40.99839 -39.04735 -37.70846 -36.25488 -34.38108 -32.62547 -32.58433 -32.02635 -31.00895 -27.39189 -26.94557 -25.24531 -24.02309 -23.05480 -22.60725 -21.47936 -21.02338 -20.46471 -18.99477 -18.32761 -18.02224 -17.56152 -17.01785 -16.94995 -16.67822 -16.41145 -15.88280 -15.74699 -15.51940 -15.36797 -14.93748 -14.75872 -14.63348 -14.48594 -14.30791 -14.25819 -13.80910 -13.68813 -13.46539 -13.25708 -13.17909 -13.02620 -12.99211 -12.76116 -12.54167 -12.31310 -12.18645 -12.06030 -12.01276 -11.90537 -11.65646 -11.62278 -11.54158 -11.30276 -10.70445 -10.55317 -10.16730 -10.09698 -8.79879 -7.90178 -5.37406 1.45076 1.52292 1.54612 1.60687 1.68086 2.13718 2.50577 2.81017 3.16936 3.23655 3.30048 3.52000 3.58439 3.74506 3.84470 3.91786 4.07541 4.12665 4.23592 4.28555 4.42831 4.45723 4.50105 4.55872 4.61167 4.65524 4.67103 4.76190 4.83206 4.88023 4.89299 4.99209 5.06452 5.10088 5.13200 5.21841 5.28803 5.36163 5.46678 5.49761 5.58681 5.66682 5.81261 5.98486 6.34373 6.55665 7.08871 7.27644 7.76670 8.29655 9.17863 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.003024 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.576208 B = 9257.073599 C =10728.189154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.062 0.938 5 C -0.123 4.123 6 C -0.144 4.144 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.717 5.717 11 C 0.137 3.863 12 C -0.138 4.138 13 H 0.119 0.881 14 C 0.156 3.844 15 N -0.605 5.605 16 C -0.265 4.265 17 H 0.082 0.918 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.298 3.702 27 F -0.211 7.211 28 F -0.208 7.208 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.100 0.900 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.170 -5.046 -6.705 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.081 0.919 5 C -0.161 4.161 6 C -0.202 4.202 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.370 5.370 11 C 0.011 3.989 12 C -0.159 4.159 13 H 0.137 0.863 14 C 0.030 3.970 15 N -0.328 5.328 16 C -0.395 4.395 17 H 0.099 0.901 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.228 1.228 23 H -0.201 1.201 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.192 7.192 28 F -0.189 7.189 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.253 0.747 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.032 0.968 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.118 0.882 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.152 -4.437 -7.276 19.153 hybrid contribution 0.898 -0.132 0.768 1.189 sum -16.254 -4.569 -6.508 18.095 Atomic orbital electron populations 1.23989 0.95936 1.02285 1.00593 1.22903 0.95994 0.97575 1.00029 1.20089 0.96510 0.96032 0.93547 0.91925 1.21632 0.98211 1.01947 0.94277 1.21698 0.99622 1.01572 0.97283 1.21756 1.00763 0.93095 1.01133 1.21330 0.78194 0.90518 0.80219 1.90668 1.63513 1.51881 1.39715 1.45930 1.47024 1.16316 1.27736 1.21017 0.95174 0.86112 0.96559 1.22772 0.99052 0.93404 1.00684 0.86279 1.20960 0.89142 0.97301 0.89626 1.44312 1.53456 1.04785 1.30199 1.19536 0.98634 0.99981 1.21319 0.90078 1.25843 0.94829 1.00558 1.03015 1.70172 1.03631 1.42451 1.41833 0.85324 0.76204 0.79033 0.79741 1.19941 1.22754 1.20075 1.20560 0.91433 0.82721 1.00180 1.23099 0.99458 1.02704 0.95543 1.21097 0.80336 0.87247 0.85199 1.92950 1.75657 1.94628 1.55959 1.92966 1.59646 1.69639 1.96620 0.89118 0.87087 0.85925 0.92619 0.91483 0.93810 0.92894 0.91854 0.86510 0.86550 0.74719 0.92598 0.91488 0.89709 0.96846 0.93987 0.90774 0.97880 0.88189 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 14.32 67.78 0.97 -1.47 16 2 C -0.15 -2.00 7.75 25.65 0.20 -1.80 16 3 C -0.04 -0.76 1.80 -11.54 -0.02 -0.78 16 4 H 0.06 1.35 7.60 -2.39 -0.02 1.33 16 5 C -0.12 -2.48 5.18 30.60 0.16 -2.32 16 6 C -0.14 -2.64 9.73 71.98 0.70 -1.94 16 7 C -0.13 -2.06 5.16 29.85 0.15 -1.90 16 8 C 0.51 12.33 7.51 87.66 0.66 12.98 16 9 O -0.58 -18.72 13.99 -3.03 -0.04 -18.76 16 10 N -0.72 -16.52 5.33 -463.06 -2.47 -18.98 16 11 C 0.14 3.90 4.83 86.38 0.42 4.32 16 12 C -0.14 -4.21 2.03 -10.72 -0.02 -4.23 16 13 H 0.12 3.28 8.14 -2.39 -0.02 3.27 16 14 C 0.16 5.69 5.40 86.36 0.47 6.16 16 15 N -0.61 -27.39 2.99 -699.10 -2.09 -29.48 16 16 C -0.27 -13.03 9.58 84.03 0.81 -12.23 16 17 H 0.08 3.71 7.88 -2.91 -0.02 3.69 16 18 C -0.05 -2.41 4.92 84.86 0.42 -1.99 16 19 N -0.94 -52.34 11.20 21.65 0.24 -52.09 16 20 Si 0.97 41.45 29.59 68.60 2.03 43.48 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 C 0.18 8.00 5.10 86.36 0.44 8.44 16 25 C -0.17 -5.94 5.62 30.67 0.17 -5.77 16 26 C 0.30 10.14 1.63 30.62 0.05 10.19 16 27 F -0.21 -8.07 15.72 44.97 0.71 -7.36 16 28 F -0.21 -6.79 16.41 44.97 0.74 -6.05 16 29 H 0.09 1.24 7.83 -2.91 -0.02 1.21 16 30 H 0.11 1.09 8.06 -2.91 -0.02 1.06 16 31 H 0.12 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.00 7.38 -2.39 -0.02 0.98 16 37 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.42 7.54 7.70 -92.71 -0.71 6.83 16 40 H 0.06 1.82 7.97 -2.38 -0.02 1.80 16 41 H 0.07 2.00 7.63 -2.39 -0.02 1.98 16 42 H 0.08 2.74 7.13 -2.39 -0.02 2.73 16 43 H 0.01 0.55 7.92 -2.38 -0.02 0.53 16 44 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 45 H 0.07 3.75 6.06 -2.39 -0.01 3.73 16 46 H 0.00 0.15 7.92 -2.39 -0.02 0.13 16 47 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 48 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -63.39 385.57 4.91 -58.48 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.23 Total: 23.13 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.57 Total: 7.65 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -4.32 Total: -100.55 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.76 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 1.45 Total: -13.42 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -63.39 4.91 -58.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744828.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.310 kcal (2) G-P(sol) polarization free energy of solvation -63.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds