Wall clock time and date at job start Tue Mar 31 2020 15:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50705 * 120.00033 * 2 1 4 4 H 1.08994 * 109.47182 * 359.97438 * 3 2 1 5 5 C 1.52995 * 109.46910 * 120.00120 * 3 2 1 6 6 C 1.53003 * 109.47386 * 294.99904 * 5 3 2 7 7 C 1.53003 * 109.47170 * 240.00138 * 3 2 1 8 8 C 1.50701 * 109.47167 * 64.99611 * 7 3 2 9 9 O 1.21282 * 119.99898 * 0.02562 * 8 7 3 10 10 N 1.34777 * 119.99942 * 179.97438 * 8 7 3 11 11 C 1.46494 * 119.99890 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47134 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.52726 * 55.07636 * 12 11 10 14 14 C 1.53200 * 109.49634 * 294.99744 * 12 11 10 15 15 N 1.46922 * 108.77403 * 185.41579 * 14 12 11 16 16 C 1.36945 * 120.62406 * 233.58210 * 15 14 12 17 17 H 1.08004 * 119.99300 * 151.83454 * 16 15 14 18 18 C 1.38804 * 120.00169 * 331.83180 * 16 15 14 19 19 N 1.31622 * 120.00247 * 343.08859 * 18 16 15 20 20 Si 1.86810 * 119.99877 * 163.08813 * 18 16 15 21 21 H 1.48499 * 109.47137 * 59.99982 * 20 18 16 22 22 H 1.48496 * 109.47053 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46625 * 300.00079 * 20 18 16 24 24 C 1.46918 * 118.74045 * 53.86356 * 15 14 12 25 25 C 1.53629 * 108.53968 * 306.08706 * 24 15 14 26 26 C 1.53035 * 109.23914 * 54.86457 * 25 24 15 27 27 F 1.39908 * 109.45806 * 178.48835 * 26 25 24 28 28 F 1.39900 * 109.45408 * 58.51904 * 26 25 24 29 29 H 1.08003 * 119.99797 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00258 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00168 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47583 * 55.00477 * 5 3 2 33 33 H 1.09008 * 109.47191 * 175.00224 * 5 3 2 34 34 H 1.08999 * 109.46817 * 59.99791 * 6 5 3 35 35 H 1.08997 * 109.47178 * 180.02562 * 6 5 3 36 36 H 1.09004 * 109.47050 * 300.00463 * 6 5 3 37 37 H 1.09012 * 109.46937 * 304.99997 * 7 3 2 38 38 H 1.08994 * 109.47120 * 185.00087 * 7 3 2 39 39 H 0.97001 * 119.99628 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.47584 * 60.00407 * 11 10 8 41 41 H 1.09003 * 109.46956 * 299.99824 * 11 10 8 42 42 H 1.08999 * 109.58400 * 65.62073 * 14 12 11 43 43 H 1.09005 * 109.58309 * 305.20494 * 14 12 11 44 44 H 0.97001 * 120.00021 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.59191 * 65.92603 * 24 15 14 46 46 H 1.09007 * 109.58246 * 186.35498 * 24 15 14 47 47 H 1.08995 * 109.63375 * 294.86744 * 25 24 15 48 48 H 1.09004 * 109.45414 * 174.74032 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9431 1.3861 1.2492 6 6 2.0564 1.4307 2.4953 7 6 2.9431 1.3862 -1.2493 8 6 2.0697 1.4300 -2.4766 9 8 0.8626 1.3999 -2.3633 10 7 2.6300 1.5037 -3.7002 11 6 1.7810 1.5469 -4.8932 12 6 2.6606 1.6278 -6.1425 13 1 3.3682 0.7987 -6.1443 14 6 3.4273 2.9542 -6.1429 15 7 4.1647 3.0737 -7.4081 16 6 5.5120 3.3193 -7.4098 17 1 6.1230 2.9722 -8.2299 18 6 6.0921 4.0144 -6.3576 19 7 5.3391 4.7191 -5.5397 20 14 7.9415 3.9496 -6.1023 21 1 8.6265 4.4843 -7.3065 22 1 8.3069 4.7694 -4.9193 23 1 8.3611 2.5429 -5.8778 24 6 3.4282 2.9309 -8.6712 25 6 2.6626 1.5993 -8.6424 26 6 1.7809 1.5514 -7.3925 27 9 1.0555 0.3552 -7.3794 28 9 0.8948 2.6339 -7.4056 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 3.5906 0.5105 1.2951 33 1 3.5540 2.2878 1.2056 34 1 1.4455 0.5290 2.5389 35 1 2.6831 1.4888 3.3853 36 1 1.4089 2.3064 2.4494 37 1 3.5906 0.5104 -1.2952 38 1 3.5539 2.2878 -1.2056 39 1 3.5955 1.5282 -3.7907 40 1 1.1336 2.4225 -4.8470 41 1 1.1702 0.6452 -4.9372 42 1 4.1282 2.9713 -5.3083 43 1 2.7247 3.7824 -6.0497 44 1 5.7446 5.2051 -4.8047 45 1 2.7258 3.7572 -8.7802 46 1 4.1298 2.9326 -9.5055 47 1 3.3701 0.7704 -8.6207 48 1 2.0373 1.5207 -9.5318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754744829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:15 Heat of formation + Delta-G solvation = -133.803688 kcal Electronic energy + Delta-G solvation = -29792.708302 eV Core-core repulsion = 25517.937932 eV Total energy + Delta-G solvation = -4274.770370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.99055 -47.95068 -40.90640 -39.01014 -37.69770 -36.10693 -34.50634 -32.85505 -32.56484 -31.54140 -31.05842 -27.47487 -26.93348 -25.29562 -24.04837 -22.85032 -22.47882 -21.53882 -21.05420 -20.41868 -19.02017 -18.33226 -17.98732 -17.62458 -17.10259 -16.80034 -16.57924 -16.55456 -15.92624 -15.57161 -15.45974 -15.31172 -14.83159 -14.75576 -14.68558 -14.40216 -14.35743 -14.26341 -13.83555 -13.81995 -13.29652 -13.20165 -13.09009 -13.00973 -12.95987 -12.79428 -12.55907 -12.26470 -12.18178 -12.12242 -12.03871 -11.86537 -11.67816 -11.64274 -11.36811 -11.29861 -10.85495 -10.55923 -10.13247 -9.94602 -8.77961 -7.88758 -5.36398 1.53503 1.55286 1.55334 1.61816 1.73515 2.15734 2.52062 2.82720 3.16591 3.24309 3.33138 3.55353 3.60265 3.80625 3.84864 3.92968 3.95764 4.10366 4.31042 4.37561 4.42764 4.46142 4.47012 4.55247 4.57754 4.67242 4.70656 4.73475 4.85878 4.90206 4.96253 5.00766 5.07260 5.08581 5.13789 5.19816 5.26714 5.37823 5.41465 5.47411 5.58922 5.67703 5.83836 6.08133 6.35954 6.56761 7.10689 7.29188 7.77317 8.31064 9.18478 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003921 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.881111 B = 7139.402326 C = 9424.058449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C -0.043 4.043 4 H 0.058 0.942 5 C -0.112 4.112 6 C -0.150 4.150 7 C -0.129 4.129 8 C 0.506 3.494 9 O -0.572 6.572 10 N -0.719 5.719 11 C 0.140 3.860 12 C -0.149 4.149 13 H 0.112 0.888 14 C 0.195 3.805 15 N -0.608 5.608 16 C -0.269 4.269 17 H 0.074 0.926 18 C -0.038 4.038 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.272 1.272 24 C 0.139 3.861 25 C -0.159 4.159 26 C 0.296 3.704 27 F -0.208 7.208 28 F -0.211 7.211 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.411 0.589 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.085 0.915 43 H -0.004 1.004 44 H 0.253 0.747 45 H 0.018 0.982 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -10.002 7.945 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C -0.062 4.062 4 H 0.076 0.924 5 C -0.149 4.149 6 C -0.208 4.208 7 C -0.169 4.169 8 C 0.294 3.706 9 O -0.451 6.451 10 N -0.372 5.372 11 C 0.014 3.986 12 C -0.170 4.170 13 H 0.130 0.870 14 C 0.068 3.932 15 N -0.330 5.330 16 C -0.399 4.399 17 H 0.092 0.908 18 C -0.235 4.235 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.208 1.208 22 H -0.223 1.223 23 H -0.198 1.198 24 C 0.014 3.986 25 C -0.198 4.198 26 C 0.259 3.741 27 F -0.189 7.189 28 F -0.193 7.193 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.014 0.986 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.482 -9.908 8.133 13.283 hybrid contribution 0.696 0.541 -0.125 0.890 sum -2.787 -9.367 8.008 12.635 Atomic orbital electron populations 1.23700 0.96470 1.00953 1.00732 1.22831 0.95869 0.97859 0.99924 1.20142 0.96495 0.96024 0.93532 0.92377 1.21522 0.97624 1.03030 0.92743 1.21755 0.99857 1.01573 0.97581 1.21778 0.98349 1.06289 0.90480 1.21337 0.89206 0.74812 0.85262 1.90676 1.16442 1.50890 1.87130 1.45977 1.10908 1.74953 1.05350 1.20974 0.92671 1.01184 0.83731 1.22972 0.97723 1.04385 0.91967 0.87015 1.20527 0.93036 0.89121 0.90504 1.44358 1.05196 1.83005 1.00455 1.19487 0.83480 1.29335 1.07565 0.90814 1.25753 1.01592 0.96243 0.99863 1.70166 1.35932 1.32160 1.19275 0.85387 0.80643 0.77754 0.76863 1.20763 1.22259 1.19783 1.21118 0.94580 0.93017 0.89929 1.23026 0.99207 1.02387 0.95223 1.21155 0.82791 0.70578 0.99568 1.92966 1.80586 1.47597 1.97758 1.92949 1.71907 1.56657 1.97758 0.90294 0.88382 0.86613 0.90425 0.91083 0.92820 0.91669 0.93581 0.86361 0.87334 0.75293 0.93428 0.91467 0.89683 0.98618 0.93810 0.96412 0.90125 0.87743 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 13.22 67.79 0.90 -3.56 16 2 C -0.15 -3.27 6.76 25.66 0.17 -3.10 16 3 C -0.04 -0.92 1.82 -11.54 -0.02 -0.95 16 4 H 0.06 1.52 7.60 -2.39 -0.02 1.50 16 5 C -0.11 -1.82 5.39 30.59 0.16 -1.65 16 6 C -0.15 -2.40 9.73 71.98 0.70 -1.70 16 7 C -0.13 -2.80 5.16 29.85 0.15 -2.64 16 8 C 0.51 15.34 7.58 87.66 0.66 16.00 16 9 O -0.57 -21.19 14.17 -3.04 -0.04 -21.23 16 10 N -0.72 -22.03 5.33 -463.07 -2.47 -24.50 16 11 C 0.14 4.81 4.83 86.38 0.42 5.22 16 12 C -0.15 -5.23 2.03 -10.71 -0.02 -5.25 16 13 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 14 C 0.19 8.49 4.18 86.37 0.36 8.85 16 15 N -0.61 -27.60 2.99 -698.24 -2.09 -29.69 16 16 C -0.27 -13.27 9.58 84.03 0.81 -12.47 16 17 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 18 C -0.04 -1.92 4.92 84.86 0.42 -1.50 16 19 N -0.93 -50.08 11.20 21.65 0.24 -49.83 16 20 Si 0.97 40.47 29.59 68.60 2.03 42.50 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.30 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.14 5.27 6.34 86.51 0.55 5.82 16 25 C -0.16 -4.88 5.64 30.82 0.17 -4.71 16 26 C 0.30 10.12 1.63 30.62 0.05 10.17 16 27 F -0.21 -6.84 16.41 44.97 0.74 -6.11 16 28 F -0.21 -8.16 15.72 44.97 0.71 -7.45 16 29 H 0.08 2.16 7.83 -2.91 -0.02 2.14 16 30 H 0.10 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 0.88 7.38 -2.39 -0.02 0.87 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.41 11.56 7.70 -92.71 -0.71 10.84 16 40 H 0.05 1.86 7.97 -2.39 -0.02 1.84 16 41 H 0.07 2.30 7.63 -2.39 -0.02 2.29 16 42 H 0.09 3.97 5.26 -2.39 -0.01 3.96 16 43 H 0.00 -0.22 7.92 -2.38 -0.02 -0.23 16 44 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 45 H 0.02 0.72 7.92 -2.39 -0.02 0.70 16 46 H 0.08 2.83 7.93 -2.38 -0.02 2.81 16 47 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 48 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -61.76 386.25 4.83 -56.93 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.23 Total: 30.85 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.48 Total: 8.54 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.31 Total: -104.02 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.23 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 1.44 Total: -13.56 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -61.76 4.83 -56.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.878 kcal (2) G-P(sol) polarization free energy of solvation -61.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds