Wall clock time and date at job start Tue Mar 31 2020 15:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00362 * 2 1 4 4 H 1.09003 * 109.46925 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.46893 * 120.00092 * 3 2 1 6 6 C 1.52999 * 109.47199 * 295.00104 * 5 3 2 7 7 C 1.52999 * 109.47056 * 240.00395 * 3 2 1 8 8 C 1.50694 * 109.47287 * 65.00142 * 7 3 2 9 9 O 1.21291 * 120.00247 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00230 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00048 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46782 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.49962 * 304.93519 * 12 11 10 14 14 C 1.53188 * 109.49772 * 65.00132 * 12 11 10 15 15 N 1.46924 * 108.77566 * 174.58214 * 14 12 11 16 16 C 1.36937 * 120.62994 * 126.36740 * 15 14 12 17 17 H 1.08005 * 119.99890 * 331.83306 * 16 15 14 18 18 C 1.38809 * 120.00249 * 151.83020 * 16 15 14 19 19 N 1.31619 * 119.99818 * 343.09376 * 18 16 15 20 20 Si 1.86796 * 120.00248 * 163.09389 * 18 16 15 21 21 H 1.48499 * 109.47511 * 60.00136 * 20 18 16 22 22 H 1.48504 * 109.47221 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46993 * 300.00063 * 20 18 16 24 24 C 1.46920 * 118.74063 * 306.39689 * 15 14 12 25 25 C 1.53190 * 108.77770 * 53.60396 * 24 15 14 26 26 C 1.53038 * 109.31200 * 305.36523 * 25 24 15 27 27 F 1.39899 * 109.46244 * 301.34174 * 26 25 24 28 28 F 1.39903 * 109.46102 * 181.38572 * 26 25 24 29 29 H 1.08003 * 120.00511 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00177 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99817 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46971 * 55.00717 * 5 3 2 33 33 H 1.09004 * 109.46587 * 175.00564 * 5 3 2 34 34 H 1.08997 * 109.47371 * 60.00136 * 6 5 3 35 35 H 1.08999 * 109.47007 * 180.02562 * 6 5 3 36 36 H 1.09003 * 109.47025 * 300.00149 * 6 5 3 37 37 H 1.09008 * 109.46602 * 184.99529 * 7 3 2 38 38 H 1.09000 * 109.47065 * 304.99595 * 7 3 2 39 39 H 0.97001 * 119.99617 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.47319 * 299.99794 * 11 10 8 41 41 H 1.09000 * 109.47311 * 60.00252 * 11 10 8 42 42 H 1.09001 * 109.58635 * 294.37441 * 14 12 11 43 43 H 1.09006 * 109.58484 * 54.79686 * 14 12 11 44 44 H 0.97006 * 120.00250 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.58899 * 173.39497 * 24 15 14 46 46 H 1.08999 * 109.58516 * 293.81377 * 24 15 14 47 47 H 1.08997 * 109.49516 * 65.32142 * 25 24 15 48 48 H 1.09003 * 109.49578 * 185.41514 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3860 1.2493 6 6 2.0565 1.4305 2.4954 7 6 2.9431 1.3861 -1.2493 8 6 2.0697 1.4301 -2.4765 9 8 0.8625 1.3992 -2.3633 10 7 2.6300 1.5038 -3.7001 11 6 1.7809 1.5460 -4.8932 12 6 2.6605 1.6272 -6.1425 13 1 3.3334 2.4806 -6.0589 14 6 3.4809 0.3402 -6.2747 15 7 4.2200 0.3788 -7.5439 16 6 5.5762 0.1911 -7.5675 17 1 6.1736 0.4595 -6.7087 18 6 6.1833 -0.3443 -8.6952 19 7 5.4591 -0.9734 -9.5964 20 14 8.0279 -0.1719 -8.9338 21 1 8.7364 -0.8222 -7.8022 22 1 8.4256 -0.8249 -10.2068 23 1 8.3884 1.2679 -8.9817 24 6 3.4764 0.6232 -8.7872 25 6 2.6560 1.9070 -8.6269 26 6 1.7758 1.7927 -7.3802 27 9 0.9345 0.6819 -7.5038 28 9 1.0019 2.9507 -7.2484 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 3.5906 0.5103 1.2951 33 1 3.5541 2.2877 1.2056 34 1 1.4456 0.5289 2.5390 35 1 2.6832 1.4886 3.3853 36 1 1.4091 2.3063 2.4495 37 1 3.5540 2.2878 -1.2056 38 1 3.5905 0.5104 -1.2952 39 1 3.5954 1.5289 -3.7907 40 1 1.1706 0.6439 -4.9370 41 1 1.1328 2.4212 -4.8472 42 1 4.1837 0.2681 -5.4446 43 1 2.8131 -0.5213 -6.2667 44 1 5.8832 -1.3473 -10.3847 45 1 4.1761 0.7377 -9.6150 46 1 2.8083 -0.2152 -8.9842 47 1 3.3289 2.7578 -8.5205 48 1 2.0262 2.0483 -9.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754744830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:19 Heat of formation + Delta-G solvation = -118.570311 kcal Electronic energy + Delta-G solvation = -29436.032163 eV Core-core repulsion = 25161.922362 eV Total energy + Delta-G solvation = -4274.109801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.53005 -46.48167 -39.85593 -37.58035 -36.75241 -34.87661 -32.72950 -31.86076 -31.25402 -30.36755 -29.93290 -26.07515 -25.22919 -24.28706 -22.45146 -21.81392 -21.40840 -20.44347 -19.64976 -19.50346 -17.42059 -16.81374 -16.74753 -16.26841 -15.76406 -15.47976 -15.34452 -15.14507 -14.78578 -14.61197 -14.23635 -13.98764 -13.67812 -13.44161 -13.34626 -13.24108 -13.08204 -12.80006 -12.74965 -12.33266 -12.22455 -12.01813 -11.68720 -11.60691 -11.52662 -11.47391 -11.35195 -11.24221 -10.97999 -10.83704 -10.63661 -10.61823 -10.56430 -10.09477 -9.95997 -9.90040 -9.64845 -9.15847 -8.91240 -8.63218 -6.91777 -5.95891 -3.41047 2.41313 2.76445 3.20147 3.28672 3.35523 3.35914 4.20740 4.35299 4.56597 4.60495 4.63811 4.69425 4.73692 4.89828 5.05354 5.08422 5.19424 5.23585 5.25996 5.33316 5.35462 5.41391 5.51095 5.57307 5.64231 5.70063 5.72261 5.76241 5.92185 5.92487 6.02423 6.03594 6.14409 6.14650 6.25288 6.31955 6.42114 6.48183 6.68361 6.70991 6.90420 7.08300 7.42845 7.58239 7.62544 8.24775 8.32870 9.00604 9.63087 10.18728 11.13226 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003062 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.498364 B = 9142.358134 C =10662.476560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.044 4.044 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.726 5.726 11 C 0.127 3.873 12 C -0.155 4.155 13 H 0.101 0.899 14 C 0.154 3.846 15 N -0.590 5.590 16 C -0.263 4.263 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.170 3.830 25 C -0.179 4.179 26 C 0.300 3.700 27 F -0.199 7.199 28 F -0.214 7.214 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.402 0.598 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.032 0.968 44 H 0.258 0.742 45 H 0.100 0.900 46 H 0.032 0.968 47 H 0.085 0.915 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 5.877 15.777 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C -0.062 4.062 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.296 3.704 9 O -0.411 6.411 10 N -0.379 5.379 11 C 0.002 3.998 12 C -0.176 4.176 13 H 0.119 0.881 14 C 0.027 3.973 15 N -0.312 5.312 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.044 3.956 25 C -0.219 4.219 26 C 0.263 3.737 27 F -0.180 7.180 28 F -0.195 7.195 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.050 0.950 47 H 0.104 0.896 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.400 5.742 15.683 17.552 hybrid contribution 1.210 0.051 -0.452 1.292 sum -4.190 5.793 15.231 16.826 Atomic orbital electron populations 1.23681 0.95937 1.01238 0.99232 1.22635 0.96003 0.97107 1.01283 1.20148 0.96531 0.97074 0.92480 0.90151 1.21546 0.97866 1.02007 0.93992 1.21758 0.99822 1.02120 0.97126 1.21725 0.98727 1.04473 0.92630 1.20648 0.89226 0.76016 0.84497 1.90708 1.14805 1.48977 1.86651 1.46008 1.10601 1.75537 1.05736 1.21272 0.92844 1.02795 0.82869 1.22965 0.97860 1.04973 0.91838 0.88098 1.20901 0.93929 0.91554 0.90937 1.44078 1.04191 1.82518 1.00402 1.19104 0.81655 1.36463 1.01999 0.91374 1.25095 0.98132 0.97045 0.98961 1.70008 1.35073 1.36900 1.12236 0.86325 0.84933 0.77888 0.77328 1.20747 1.21534 1.20869 1.20837 0.93828 0.89860 0.91064 1.23272 0.99062 1.05080 0.94459 1.21035 0.82830 0.71139 0.98666 1.92965 1.74010 1.53904 1.97155 1.92955 1.78355 1.51011 1.97166 0.89268 0.88713 0.88053 0.91763 0.91823 0.92388 0.92972 0.92864 0.88798 0.88690 0.76294 0.90882 0.91256 0.91639 0.95018 0.93244 0.88161 0.94964 0.89594 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 13.22 29.02 0.38 -1.48 16 2 C -0.15 -1.62 6.76 -36.03 -0.24 -1.86 16 3 C -0.04 -0.41 1.82 -91.77 -0.17 -0.58 16 4 H 0.08 0.87 7.60 -51.93 -0.39 0.48 16 5 C -0.12 -0.87 5.39 -26.73 -0.14 -1.01 16 6 C -0.15 -1.10 9.73 37.16 0.36 -0.74 16 7 C -0.14 -1.25 5.16 -27.89 -0.14 -1.40 16 8 C 0.51 6.64 7.58 -10.99 -0.08 6.56 16 9 O -0.53 -8.79 14.17 5.55 0.08 -8.71 16 10 N -0.73 -9.24 5.33 -60.29 -0.32 -9.57 16 11 C 0.13 1.91 4.83 -4.04 -0.02 1.90 16 12 C -0.15 -2.52 2.03 -90.50 -0.18 -2.70 16 13 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 14 C 0.15 2.93 5.40 -3.71 -0.02 2.91 16 15 N -0.59 -13.57 2.99 -172.33 -0.52 -14.09 16 16 C -0.26 -6.62 9.58 -15.06 -0.14 -6.77 16 17 H 0.07 1.65 7.89 -52.48 -0.41 1.23 16 18 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 19 N -0.90 -24.69 11.20 55.49 0.62 -24.07 16 20 Si 0.91 20.34 29.59 -169.99 -5.03 15.31 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.17 3.81 5.10 -3.71 -0.02 3.79 16 25 C -0.18 -3.27 5.62 -26.61 -0.15 -3.42 16 26 C 0.30 5.33 1.63 -26.69 -0.04 5.28 16 27 F -0.20 -3.86 15.73 2.25 0.04 -3.82 16 28 F -0.21 -3.72 16.41 2.25 0.04 -3.69 16 29 H 0.09 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.09 1.13 7.83 -52.48 -0.41 0.71 16 31 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.34 7.70 -40.82 -0.31 4.03 16 40 H 0.07 1.22 7.97 -51.93 -0.41 0.81 16 41 H 0.07 1.09 7.63 -51.93 -0.40 0.70 16 42 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 43 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 44 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.10 2.48 6.06 -51.93 -0.31 2.17 16 46 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 48 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -29.35 386.23 -8.00 -37.35 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.02 Total: 4.87 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.70 Total: 0.58 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.22 Total: -47.72 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.07 Total: -7.51 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.35 -8.00 -37.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.220 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds