Wall clock time and date at job start Tue Mar 31 2020 15:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00362 * 2 1 4 4 H 1.09003 * 109.46925 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.46893 * 120.00092 * 3 2 1 6 6 C 1.52999 * 109.47199 * 295.00104 * 5 3 2 7 7 C 1.52999 * 109.47056 * 240.00395 * 3 2 1 8 8 C 1.50694 * 109.47287 * 65.00142 * 7 3 2 9 9 O 1.21291 * 120.00247 * 359.97438 * 8 7 3 10 10 N 1.34774 * 120.00230 * 179.97438 * 8 7 3 11 11 C 1.46501 * 120.00048 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46782 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.49962 * 304.93519 * 12 11 10 14 14 C 1.53188 * 109.49772 * 65.00132 * 12 11 10 15 15 N 1.46924 * 108.77566 * 174.58214 * 14 12 11 16 16 C 1.36937 * 120.62994 * 126.36740 * 15 14 12 17 17 H 1.08005 * 119.99890 * 331.83306 * 16 15 14 18 18 C 1.38809 * 120.00249 * 151.83020 * 16 15 14 19 19 N 1.31619 * 119.99818 * 343.09376 * 18 16 15 20 20 Si 1.86796 * 120.00248 * 163.09389 * 18 16 15 21 21 H 1.48499 * 109.47511 * 60.00136 * 20 18 16 22 22 H 1.48504 * 109.47221 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46993 * 300.00063 * 20 18 16 24 24 C 1.46920 * 118.74063 * 306.39689 * 15 14 12 25 25 C 1.53190 * 108.77770 * 53.60396 * 24 15 14 26 26 C 1.53038 * 109.31200 * 305.36523 * 25 24 15 27 27 F 1.39899 * 109.46244 * 301.34174 * 26 25 24 28 28 F 1.39903 * 109.46102 * 181.38572 * 26 25 24 29 29 H 1.08003 * 120.00511 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00177 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.99817 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46971 * 55.00717 * 5 3 2 33 33 H 1.09004 * 109.46587 * 175.00564 * 5 3 2 34 34 H 1.08997 * 109.47371 * 60.00136 * 6 5 3 35 35 H 1.08999 * 109.47007 * 180.02562 * 6 5 3 36 36 H 1.09003 * 109.47025 * 300.00149 * 6 5 3 37 37 H 1.09008 * 109.46602 * 184.99529 * 7 3 2 38 38 H 1.09000 * 109.47065 * 304.99595 * 7 3 2 39 39 H 0.97001 * 119.99617 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.47319 * 299.99794 * 11 10 8 41 41 H 1.09000 * 109.47311 * 60.00252 * 11 10 8 42 42 H 1.09001 * 109.58635 * 294.37441 * 14 12 11 43 43 H 1.09006 * 109.58484 * 54.79686 * 14 12 11 44 44 H 0.97006 * 120.00250 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.58899 * 173.39497 * 24 15 14 46 46 H 1.08999 * 109.58516 * 293.81377 * 24 15 14 47 47 H 1.08997 * 109.49516 * 65.32142 * 25 24 15 48 48 H 1.09003 * 109.49578 * 185.41514 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3860 1.2493 6 6 2.0565 1.4305 2.4954 7 6 2.9431 1.3861 -1.2493 8 6 2.0697 1.4301 -2.4765 9 8 0.8625 1.3992 -2.3633 10 7 2.6300 1.5038 -3.7001 11 6 1.7809 1.5460 -4.8932 12 6 2.6605 1.6272 -6.1425 13 1 3.3334 2.4806 -6.0589 14 6 3.4809 0.3402 -6.2747 15 7 4.2200 0.3788 -7.5439 16 6 5.5762 0.1911 -7.5675 17 1 6.1736 0.4595 -6.7087 18 6 6.1833 -0.3443 -8.6952 19 7 5.4591 -0.9734 -9.5964 20 14 8.0279 -0.1719 -8.9338 21 1 8.7364 -0.8222 -7.8022 22 1 8.4256 -0.8249 -10.2068 23 1 8.3884 1.2679 -8.9817 24 6 3.4764 0.6232 -8.7872 25 6 2.6560 1.9070 -8.6269 26 6 1.7758 1.7927 -7.3802 27 9 0.9345 0.6819 -7.5038 28 9 1.0019 2.9507 -7.2484 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 3.5906 0.5103 1.2951 33 1 3.5541 2.2877 1.2056 34 1 1.4456 0.5289 2.5390 35 1 2.6832 1.4886 3.3853 36 1 1.4091 2.3063 2.4495 37 1 3.5540 2.2878 -1.2056 38 1 3.5905 0.5104 -1.2952 39 1 3.5954 1.5289 -3.7907 40 1 1.1706 0.6439 -4.9370 41 1 1.1328 2.4212 -4.8472 42 1 4.1837 0.2681 -5.4446 43 1 2.8131 -0.5213 -6.2667 44 1 5.8832 -1.3473 -10.3847 45 1 4.1761 0.7377 -9.6150 46 1 2.8083 -0.2152 -8.9842 47 1 3.3289 2.7578 -8.5205 48 1 2.0262 2.0483 -9.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754744830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:18 Heat of formation + Delta-G solvation = -134.346977 kcal Electronic energy + Delta-G solvation = -29436.716291 eV Core-core repulsion = 25161.922362 eV Total energy + Delta-G solvation = -4274.793929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00237 -47.96001 -40.89557 -39.03274 -37.68877 -36.21339 -34.36809 -32.66217 -32.48787 -32.02458 -30.97438 -27.38953 -26.94635 -25.27073 -24.02248 -22.96231 -22.46792 -21.53536 -21.06297 -20.40573 -18.99798 -18.32717 -17.99649 -17.56005 -16.99644 -16.94991 -16.63941 -16.48042 -15.98466 -15.57223 -15.44197 -15.34417 -14.85190 -14.71646 -14.69781 -14.43537 -14.34846 -14.27035 -13.84342 -13.79771 -13.26634 -13.17801 -13.08662 -13.02215 -12.97887 -12.75046 -12.53309 -12.31199 -12.18396 -12.13619 -12.01331 -11.90451 -11.65604 -11.64935 -11.36063 -11.29799 -10.83992 -10.55596 -10.12576 -9.94243 -8.79946 -7.90112 -5.37433 1.52411 1.54590 1.56100 1.60829 1.76359 2.14232 2.50663 2.81169 3.17116 3.23737 3.30567 3.52086 3.58696 3.83759 3.87697 3.92452 3.95126 4.10393 4.25851 4.39762 4.43878 4.48418 4.51428 4.55804 4.62946 4.67759 4.71008 4.76605 4.84746 4.88160 4.89866 5.04145 5.08884 5.09982 5.11447 5.22107 5.28700 5.40879 5.44051 5.49920 5.58489 5.66610 5.86172 6.07516 6.34351 6.60502 7.08795 7.33414 7.76615 8.29693 9.17960 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003062 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.498364 B = 9142.358134 C =10662.476560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.150 4.150 3 C -0.043 4.043 4 H 0.062 0.938 5 C -0.111 4.111 6 C -0.152 4.152 7 C -0.128 4.128 8 C 0.505 3.495 9 O -0.573 6.573 10 N -0.719 5.719 11 C 0.138 3.862 12 C -0.137 4.137 13 H 0.119 0.881 14 C 0.156 3.844 15 N -0.605 5.605 16 C -0.265 4.265 17 H 0.082 0.918 18 C -0.047 4.047 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.301 1.301 23 H -0.275 1.275 24 C 0.177 3.823 25 C -0.168 4.168 26 C 0.297 3.703 27 F -0.211 7.211 28 F -0.208 7.208 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.415 0.585 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.012 0.988 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.003 0.997 47 H 0.100 0.900 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 7.231 17.517 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.062 4.062 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.168 4.168 8 C 0.293 3.707 9 O -0.452 6.452 10 N -0.373 5.373 11 C 0.013 3.987 12 C -0.159 4.159 13 H 0.137 0.863 14 C 0.030 3.970 15 N -0.327 5.327 16 C -0.394 4.394 17 H 0.099 0.901 18 C -0.243 4.243 19 N -0.581 5.581 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.228 1.228 23 H -0.200 1.200 24 C 0.051 3.949 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.192 7.192 28 F -0.189 7.189 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.252 0.748 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.030 0.970 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.118 0.882 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.599 7.117 17.458 19.193 hybrid contribution 0.584 -0.392 -0.966 1.195 sum -3.014 6.725 16.492 18.064 Atomic orbital electron populations 1.23691 0.96549 1.00881 1.00896 1.22882 0.95887 0.98185 0.99798 1.20155 0.96579 0.95639 0.93830 0.91924 1.21520 0.97550 1.03184 0.92568 1.21767 0.99917 1.01479 0.97797 1.21785 0.98225 1.06750 0.90016 1.21394 0.89198 0.74764 0.85329 1.90706 1.16748 1.50616 1.87158 1.45933 1.10998 1.75323 1.05003 1.20977 0.92682 1.01660 0.83369 1.22768 0.97473 1.03953 0.91665 0.86268 1.20951 0.93934 0.92197 0.89885 1.44312 1.04101 1.82704 1.01632 1.19538 0.82830 1.34988 1.02077 0.90058 1.25849 1.01943 0.97380 0.99117 1.70173 1.36559 1.38652 1.12743 0.85317 0.80367 0.77915 0.76661 1.19937 1.22772 1.20037 1.20555 0.93030 0.90835 0.90463 1.23098 0.99043 1.03062 0.95595 1.21108 0.82787 0.70932 0.99083 1.92950 1.74421 1.54643 1.97231 1.92966 1.78209 1.50559 1.97144 0.88972 0.89932 0.87168 0.90799 0.90332 0.93290 0.91783 0.93339 0.85930 0.86731 0.74823 0.92875 0.91612 0.89714 0.96974 0.93990 0.90759 0.97934 0.88158 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 13.22 67.78 0.90 -3.31 16 2 C -0.15 -3.03 6.76 25.65 0.17 -2.86 16 3 C -0.04 -0.74 1.82 -11.54 -0.02 -0.76 16 4 H 0.06 1.31 7.60 -2.39 -0.02 1.29 16 5 C -0.11 -1.34 5.39 30.60 0.16 -1.18 16 6 C -0.15 -1.97 9.73 71.98 0.70 -1.27 16 7 C -0.13 -1.97 5.16 29.85 0.15 -1.81 16 8 C 0.50 12.19 7.58 87.66 0.66 12.86 16 9 O -0.57 -18.53 14.17 -3.06 -0.04 -18.58 16 10 N -0.72 -16.62 5.33 -463.05 -2.47 -19.09 16 11 C 0.14 3.99 4.83 86.38 0.42 4.41 16 12 C -0.14 -4.22 2.03 -10.71 -0.02 -4.24 16 13 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 14 C 0.16 5.75 5.40 86.36 0.47 6.22 16 15 N -0.61 -27.47 2.99 -699.12 -2.09 -29.56 16 16 C -0.26 -13.03 9.58 84.03 0.81 -12.22 16 17 H 0.08 3.72 7.89 -2.91 -0.02 3.70 16 18 C -0.05 -2.43 4.92 84.86 0.42 -2.02 16 19 N -0.94 -52.44 11.20 21.65 0.24 -52.20 16 20 Si 0.97 41.46 29.59 68.60 2.03 43.49 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.18 8.03 5.10 86.36 0.44 8.47 16 25 C -0.17 -5.97 5.62 30.67 0.17 -5.79 16 26 C 0.30 10.19 1.63 30.62 0.05 10.24 16 27 F -0.21 -8.16 15.73 44.97 0.71 -7.46 16 28 F -0.21 -6.84 16.41 44.97 0.74 -6.10 16 29 H 0.09 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.08 2.06 7.83 -2.91 -0.02 2.04 16 31 H 0.11 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.71 7.38 -2.39 -0.02 0.70 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.41 7.53 7.70 -92.71 -0.71 6.81 16 40 H 0.05 1.76 7.97 -2.39 -0.02 1.75 16 41 H 0.07 1.98 7.63 -2.39 -0.02 1.97 16 42 H 0.08 2.76 7.13 -2.39 -0.02 2.74 16 43 H 0.01 0.50 7.92 -2.38 -0.02 0.48 16 44 H 0.25 13.77 8.31 -92.70 -0.77 12.99 16 45 H 0.07 3.76 6.06 -2.39 -0.01 3.75 16 46 H 0.00 0.13 7.92 -2.39 -0.02 0.11 16 47 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 48 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -64.20 386.23 4.82 -59.38 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.23 Total: 23.36 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.48 Total: 6.75 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.32 Total: -100.85 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.04 Total: -18.58 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 1.45 Total: -13.56 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -64.20 4.82 -59.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754744830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.963 kcal (2) G-P(sol) polarization free energy of solvation -64.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds