Wall clock time and date at job start Tue Mar 31 2020 16:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39907 * 109.46844 * 2 1 4 4 F 1.39899 * 109.46712 * 240.00268 * 2 1 3 5 5 C 1.52994 * 109.47466 * 119.99958 * 2 1 3 6 6 C 1.50697 * 115.55153 * 294.95408 * 5 2 1 7 7 O 1.21284 * 119.99863 * 93.10368 * 6 5 2 8 8 N 1.34772 * 120.00358 * 273.10650 * 6 5 2 9 9 C 1.46498 * 120.00228 * 174.93953 * 8 6 5 10 10 H 1.09000 * 109.47310 * 35.00477 * 9 8 6 11 11 C 1.53012 * 109.46987 * 155.00168 * 9 8 6 12 12 C 1.53000 * 109.46918 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47095 * 299.99751 * 12 11 9 14 14 H 1.09000 * 109.47202 * 300.00667 * 13 12 11 15 15 C 1.53000 * 109.47095 * 179.97438 * 13 12 11 16 16 N 1.46505 * 109.46995 * 175.00177 * 15 13 12 17 17 C 1.36930 * 119.99862 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99836 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00075 * 180.27555 * 17 16 15 20 20 N 1.31614 * 119.99973 * 359.72242 * 19 17 16 21 21 Si 1.86797 * 120.00077 * 179.72286 * 19 17 16 22 22 H 1.48499 * 109.47275 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47151 * 120.00102 * 21 19 17 24 24 H 1.48502 * 109.47268 * 239.99841 * 21 19 17 25 25 C 1.53006 * 109.46794 * 60.00128 * 13 12 11 26 26 C 1.52995 * 109.47497 * 299.99687 * 25 13 12 27 27 C 1.53001 * 117.51785 * 80.65584 * 5 2 1 28 28 C 1.52996 * 117.49778 * 149.28490 * 5 2 1 29 29 H 1.09006 * 109.46342 * 304.71888 * 1 2 3 30 30 H 1.09001 * 109.47589 * 64.72039 * 1 2 3 31 31 H 1.09002 * 109.47114 * 184.72574 * 1 2 3 32 32 H 0.97004 * 120.00133 * 354.94732 * 8 6 5 33 33 H 1.08997 * 109.46565 * 60.00468 * 11 9 8 34 34 H 1.08998 * 109.46816 * 300.00183 * 11 9 8 35 35 H 1.08996 * 109.46954 * 180.02562 * 12 11 9 36 36 H 1.08994 * 109.47339 * 59.99867 * 12 11 9 37 37 H 1.09000 * 109.46906 * 55.00456 * 15 13 12 38 38 H 1.08996 * 109.47235 * 294.99946 * 15 13 12 39 39 H 0.97003 * 120.00074 * 0.02562 * 16 15 13 40 40 H 0.96996 * 120.00575 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46806 * 60.00296 * 25 13 12 42 42 H 1.09006 * 109.46760 * 179.97438 * 25 13 12 43 43 H 1.08994 * 109.47288 * 300.00411 * 26 25 13 44 44 H 1.08996 * 109.47256 * 180.02562 * 26 25 13 45 45 H 1.08994 * 117.50151 * 214.97037 * 27 5 2 46 46 H 1.09006 * 117.49661 * 359.97438 * 27 5 2 47 47 H 1.09000 * 117.50459 * 359.97438 * 28 5 2 48 48 H 1.09005 * 117.50041 * 145.00349 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 1.7160 -0.0557 2.5618 7 8 0.7160 -0.3713 3.1711 8 7 2.5374 0.8903 3.0587 9 6 2.1673 1.6155 4.2766 10 1 1.6333 0.9455 4.9504 11 6 3.4315 2.1318 4.9668 12 6 3.0451 2.8887 6.2391 13 6 2.1438 4.0704 5.8755 14 1 2.6776 4.7407 5.2018 15 6 1.7568 4.8270 7.1478 16 7 0.9936 6.0253 6.7903 17 6 0.5376 6.8646 7.7715 18 1 0.7403 6.6429 8.8089 19 6 -0.1905 7.9970 7.4332 20 7 -0.4378 8.2669 6.1690 21 14 -0.8191 9.1378 8.7721 22 1 -0.4093 8.6153 10.1003 23 1 -0.2465 10.4940 8.5760 24 1 -2.3007 9.2116 8.7043 25 6 0.8796 3.5542 5.1853 26 6 1.2660 2.7973 3.9130 27 6 2.0681 -2.2507 1.2205 28 6 3.3756 -1.4600 1.1425 29 1 -0.3632 0.5854 0.8448 30 1 -0.3634 0.4388 -0.9292 31 1 -0.3633 -1.0242 0.0847 32 1 3.3736 1.0910 2.6099 33 1 3.9654 2.8018 4.2930 34 1 4.0734 1.2898 5.2261 35 1 3.9456 3.2568 6.7305 36 1 2.5113 2.2184 6.9126 37 1 2.6588 5.1179 7.6861 38 1 1.1468 4.1835 7.7818 39 1 0.8112 6.2242 5.8586 40 1 -0.9462 9.0584 5.9324 41 1 0.3458 2.8839 5.8590 42 1 0.2373 4.3961 4.9267 43 1 1.7998 3.4676 3.2394 44 1 0.3654 2.4299 3.4211 45 1 1.8520 -2.7755 2.1510 46 1 1.7226 -2.7434 0.3116 47 1 3.8907 -1.4327 0.1823 48 1 4.0198 -1.4648 2.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754956504.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:39 Heat of formation + Delta-G solvation = -143.583581 kcal Electronic energy + Delta-G solvation = -29224.827816 eV Core-core repulsion = 24949.633358 eV Total energy + Delta-G solvation = -4275.194458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.12797 -48.13153 -41.41860 -39.73723 -37.72223 -36.70794 -35.15029 -33.08601 -32.30144 -31.75050 -30.61073 -27.14917 -26.00528 -24.68889 -23.94189 -23.55262 -23.18123 -21.83231 -21.23952 -20.53669 -19.21960 -19.01824 -18.46277 -17.48763 -17.28317 -17.11839 -16.67980 -16.10293 -15.83744 -15.56163 -15.41735 -15.28837 -14.97714 -14.88280 -14.65432 -14.57649 -14.38230 -14.20512 -13.78921 -13.59050 -13.48280 -13.31438 -13.27375 -13.11359 -12.88933 -12.86010 -12.78621 -12.53934 -12.13325 -12.07899 -12.04576 -11.91116 -11.72221 -11.55938 -11.43747 -11.25788 -11.17035 -10.94024 -10.87207 -10.10152 -8.98404 -7.95394 -5.23639 1.28378 1.46064 1.47139 1.57292 1.91638 2.32257 2.55670 2.58174 3.01988 3.19527 3.38051 3.45913 3.50792 3.69184 3.73546 3.82861 3.88467 3.94791 4.07450 4.14731 4.40281 4.42619 4.44983 4.52247 4.53860 4.55645 4.57312 4.60385 4.63139 4.80842 4.85234 4.90265 4.93541 5.04876 5.06402 5.07273 5.11125 5.20033 5.23018 5.30247 5.44744 5.46658 5.53235 5.60909 6.27510 6.43722 7.09680 7.33356 8.11237 8.34013 9.28581 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002347 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.626559 B =11925.357602 C =12606.176420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.334 3.666 3 F -0.204 7.204 4 F -0.191 7.191 5 C -0.237 4.237 6 C 0.557 3.443 7 O -0.563 6.563 8 N -0.703 5.703 9 C 0.151 3.849 10 H 0.075 0.925 11 C -0.112 4.112 12 C -0.101 4.101 13 C -0.084 4.084 14 H 0.065 0.935 15 C 0.154 3.846 16 N -0.745 5.745 17 C -0.243 4.243 18 H 0.075 0.925 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.294 1.294 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.119 4.119 28 C -0.132 4.132 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.015 0.985 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.111 0.889 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 -24.745 -13.572 30.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.298 3.702 3 F -0.185 7.185 4 F -0.172 7.172 5 C -0.241 4.241 6 C 0.342 3.658 7 O -0.441 6.441 8 N -0.353 5.353 9 C 0.047 3.953 10 H 0.093 0.907 11 C -0.150 4.150 12 C -0.139 4.139 13 C -0.103 4.103 14 H 0.083 0.917 15 C 0.027 3.973 16 N -0.388 5.388 17 C -0.375 4.375 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.219 1.219 24 H -0.221 1.221 25 C -0.138 4.138 26 C -0.156 4.156 27 C -0.156 4.156 28 C -0.168 4.168 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.033 0.967 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.129 0.871 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.602 -24.894 -12.970 30.006 hybrid contribution -0.582 1.505 -0.051 1.614 sum 10.020 -23.389 -13.021 28.583 Atomic orbital electron populations 1.22743 0.90219 1.06623 1.05272 1.20075 0.94185 0.74556 0.81414 1.93036 1.90717 1.37961 1.96765 1.93007 1.90640 1.80910 1.52652 1.22273 1.10180 0.98869 0.92761 1.19259 0.82611 0.78961 0.84930 1.90724 1.28199 1.64176 1.61023 1.45960 1.23907 1.37427 1.28013 1.20965 0.96692 0.92116 0.85554 0.90664 1.21723 0.95535 1.00871 0.96834 1.21423 0.99494 0.95552 0.97442 1.21255 0.96096 0.96965 0.96009 0.91679 1.20884 0.93502 0.87158 0.95710 1.42632 1.64872 1.25358 1.05959 1.19695 1.26120 1.02136 0.89592 0.90743 1.25582 1.02335 1.00787 0.98340 1.69824 1.46405 1.28913 1.17023 0.85063 0.77258 0.78509 0.78884 1.19013 1.21903 1.22117 1.21360 0.97417 0.98694 0.96367 1.21801 0.99212 0.97083 0.97473 1.23181 0.99628 0.86961 1.05821 1.23374 0.89030 0.98138 1.06306 0.90743 0.88731 0.87659 0.74921 0.90159 0.88902 0.89937 0.91468 0.95972 0.96665 0.79418 0.94049 0.92731 0.94105 0.91453 0.93663 0.87075 0.85623 0.85841 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.19 71.98 0.66 -2.49 16 2 C 0.33 5.80 2.08 30.59 0.06 5.87 16 3 F -0.20 -4.33 16.87 44.97 0.76 -3.57 16 4 F -0.19 -3.14 15.65 44.97 0.70 -2.44 16 5 C -0.24 -3.68 1.65 -52.93 -0.09 -3.77 16 6 C 0.56 11.90 6.20 87.66 0.54 12.44 16 7 O -0.56 -16.49 16.70 -3.04 -0.05 -16.54 16 8 N -0.70 -12.82 5.08 -442.52 -2.25 -15.07 16 9 C 0.15 3.28 2.50 45.00 0.11 3.40 16 10 H 0.08 1.92 7.51 -2.39 -0.02 1.90 16 11 C -0.11 -1.92 5.39 30.60 0.16 -1.76 16 12 C -0.10 -2.24 5.20 30.60 0.16 -2.08 16 13 C -0.08 -2.65 2.23 -10.79 -0.02 -2.67 16 14 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 15 C 0.15 6.23 5.65 86.38 0.49 6.71 16 16 N -0.75 -39.01 5.33 -343.45 -1.83 -40.84 16 17 C -0.24 -13.99 9.99 84.03 0.84 -13.15 16 18 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 20 N -0.97 -60.85 13.06 21.65 0.28 -60.56 16 21 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 25 C -0.10 -3.30 5.08 30.59 0.16 -3.15 16 26 C -0.12 -3.22 5.50 30.59 0.17 -3.05 16 27 C -0.12 -1.31 9.67 30.59 0.30 -1.01 16 28 C -0.13 -1.22 9.66 30.59 0.30 -0.92 16 29 H 0.07 1.53 7.85 -2.38 -0.02 1.51 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.41 5.43 8.61 -92.71 -0.80 4.64 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.37 20.79 6.85 -92.71 -0.63 20.15 16 40 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.63 7.18 -2.38 -0.02 1.61 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.13 1.05 7.93 -2.38 -0.02 1.03 16 47 H 0.12 0.94 7.63 -2.39 -0.02 0.92 16 48 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -72.23 392.73 3.48 -68.75 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.47 Total: 30.87 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.30 Total: -9.79 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.79 Total: -116.47 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.05 Total: -16.54 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 1.46 Total: -6.01 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -72.23 3.48 -68.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754956504.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.833 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds