Wall clock time and date at job start Tue Mar 31 2020 15:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46637 * 2 1 4 4 N 1.46502 * 109.46985 * 119.99781 * 2 1 3 5 5 C 1.46494 * 119.99855 * 140.38129 * 4 2 1 6 6 C 1.53006 * 109.46837 * 90.00048 * 5 4 2 7 7 N 1.46501 * 109.46967 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00463 * 269.99954 * 7 6 5 9 9 C 1.36939 * 119.99716 * 89.99853 * 7 6 5 10 10 H 1.08001 * 120.00054 * 20.08726 * 9 7 6 11 11 C 1.38814 * 120.00022 * 200.08894 * 9 7 6 12 12 N 1.31618 * 120.00207 * 11.66085 * 11 9 7 13 13 Si 1.86799 * 119.99868 * 191.66298 * 11 9 7 14 14 H 1.48502 * 109.46986 * 90.00279 * 13 11 9 15 15 H 1.48505 * 109.47101 * 209.99915 * 13 11 9 16 16 H 1.48493 * 109.47364 * 330.00122 * 13 11 9 17 17 C 1.34779 * 119.99826 * 320.37950 * 4 2 1 18 18 O 1.21606 * 119.99460 * 142.67016 * 17 4 2 19 19 C 1.47513 * 120.00330 * 322.67216 * 17 4 2 20 20 C 1.41045 * 119.39347 * 29.50404 * 19 17 4 21 21 C 1.35182 * 121.65031 * 179.97438 * 20 19 17 22 22 C 1.41374 * 119.93918 * 0.02626 * 21 20 19 23 23 N 1.31926 * 134.39806 * 180.02562 * 22 21 20 24 24 N 1.39926 * 109.06136 * 179.97438 * 23 22 21 25 25 H 0.97001 * 124.97984 * 180.02562 * 24 23 22 26 26 C 1.33817 * 110.02820 * 0.02562 * 24 23 22 27 27 C 1.38543 * 107.83765 * 359.97438 * 26 24 23 28 28 C 1.38226 * 119.39100 * 209.23191 * 19 17 4 29 29 H 1.08997 * 109.47078 * 51.32554 * 1 2 3 30 30 H 1.09007 * 109.46364 * 171.31756 * 1 2 3 31 31 H 1.08990 * 109.47113 * 291.31799 * 1 2 3 32 32 H 1.08994 * 109.47633 * 240.00192 * 2 1 3 33 33 H 1.09011 * 109.47081 * 105.30590 * 3 2 1 34 34 H 1.09001 * 109.47310 * 225.30661 * 3 2 1 35 35 H 1.08997 * 109.47508 * 345.30809 * 3 2 1 36 36 H 1.08997 * 109.47134 * 209.99908 * 5 4 2 37 37 H 1.08991 * 109.47262 * 330.00183 * 5 4 2 38 38 H 1.08997 * 109.47145 * 299.99853 * 6 5 4 39 39 H 1.08996 * 109.47285 * 60.00458 * 6 5 4 40 40 H 1.09010 * 109.46962 * 93.18802 * 8 7 6 41 41 H 1.09001 * 109.47383 * 213.18847 * 8 7 6 42 42 H 1.09000 * 109.46971 * 333.19031 * 8 7 6 43 43 H 0.96996 * 120.00254 * 179.97438 * 12 11 9 44 44 H 1.07997 * 119.16705 * 359.97438 * 20 19 17 45 45 H 1.08001 * 120.02938 * 180.02562 * 21 20 19 46 46 H 1.07991 * 126.08077 * 180.02562 * 26 24 23 47 47 H 1.07998 * 120.32594 * 0.02838 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.1839 -1.5736 1.1077 6 6 4.4569 -0.7653 1.3669 7 7 5.6225 -1.6485 1.2790 8 6 6.1106 -2.3387 2.4755 9 6 6.2558 -1.8289 0.0783 10 1 6.1262 -1.1069 -0.7144 11 6 7.0642 -2.9397 -0.1200 12 7 7.0452 -3.9306 0.7461 13 14 8.1793 -3.0282 -1.6160 14 1 9.5000 -2.4355 -1.2848 15 1 8.3598 -4.4470 -2.0157 16 1 7.5648 -2.2726 -2.7369 17 6 1.3953 -0.5134 2.3781 18 8 1.2761 -1.4468 3.1484 19 6 0.8579 0.8126 2.7372 20 6 0.4232 1.6831 1.7161 21 6 -0.0772 2.9079 1.9935 22 6 -0.1739 3.3433 3.3350 23 7 -0.6029 4.4458 3.9189 24 7 -0.4575 4.3154 5.3045 25 1 -0.7021 4.9917 5.9554 26 6 0.0684 3.1208 5.5997 27 6 0.2777 2.4434 4.4094 28 6 0.7845 1.1769 4.0686 29 1 -0.3633 0.6422 -0.8023 30 1 -0.3632 -1.0160 -0.1552 31 1 -0.3633 0.3736 0.9573 32 1 1.8935 -0.5138 -0.8899 33 1 2.4168 1.6947 0.9913 34 1 2.8425 1.5443 -0.7305 35 1 1.2239 2.1164 -0.2606 36 1 3.0978 -2.3647 1.8526 37 1 3.2304 -2.0153 0.1124 38 1 4.5430 0.0257 0.6220 39 1 4.4105 -0.3237 2.3623 40 1 5.6562 -3.3278 2.5351 41 1 7.1945 -2.4396 2.4201 42 1 5.8441 -1.7624 3.3615 43 1 7.6099 -4.7070 0.6074 44 1 0.4920 1.3630 0.6870 45 1 -0.4028 3.5531 1.1909 46 1 0.2895 2.7504 6.5897 47 1 1.1177 0.4975 4.8391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755811812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:14 Heat of formation + Delta-G solvation = 180.979400 kcal Electronic energy + Delta-G solvation = -28923.143143 eV Core-core repulsion = 25112.711978 eV Total energy + Delta-G solvation = -3810.431165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.74158 -40.66802 -37.43591 -36.57380 -35.48663 -32.93649 -32.33592 -31.10871 -30.38590 -29.30624 -27.83601 -27.21284 -25.81545 -25.20266 -23.43720 -22.33829 -22.08515 -20.87855 -20.38273 -19.05810 -18.26059 -17.12079 -17.01934 -16.59412 -15.84372 -15.49867 -15.13471 -14.77014 -14.62142 -14.30900 -14.21054 -13.87545 -13.61142 -13.47768 -13.33576 -13.24088 -12.74307 -12.49461 -12.37570 -12.08329 -11.75561 -11.50127 -11.40065 -11.29092 -11.11134 -10.85808 -10.79219 -10.58096 -10.52036 -10.46672 -10.07404 -9.91760 -9.89692 -9.75049 -9.61577 -8.78705 -8.56591 -8.22340 -7.79057 -6.74129 -5.69883 -3.13950 0.34920 1.39262 2.16161 2.40919 2.87066 3.29494 3.40086 3.46024 3.47264 3.77451 4.06195 4.35247 4.52380 4.64359 4.71414 4.76645 4.90940 5.00212 5.08916 5.21639 5.40733 5.43584 5.47288 5.53740 5.60437 5.69536 5.73455 5.89816 5.93462 5.97512 6.08973 6.23826 6.24131 6.28168 6.35673 6.40858 6.43652 6.61498 6.66100 6.75978 6.83188 6.87834 7.17898 7.33681 7.47142 7.76343 7.79878 7.85636 8.36360 8.43005 9.26261 9.89773 10.38188 11.35330 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002942 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.210501 B = 9515.477533 C = 9940.423370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.136 3.864 3 C -0.183 4.183 4 N -0.627 5.627 5 C 0.098 3.902 6 C 0.143 3.857 7 N -0.599 5.599 8 C 0.164 3.836 9 C -0.254 4.254 10 H 0.070 0.930 11 C 0.000 4.000 12 N -0.908 5.908 13 Si 0.906 3.094 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.578 3.422 18 O -0.525 6.525 19 C -0.174 4.174 20 C -0.112 4.112 21 C -0.134 4.134 22 C 0.123 3.877 23 N -0.316 5.316 24 N -0.428 5.428 25 H 0.443 0.557 26 C 0.099 3.901 27 C -0.221 4.221 28 C 0.025 3.975 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.051 0.949 42 H -0.005 1.005 43 H 0.252 0.748 44 H 0.213 0.787 45 H 0.129 0.871 46 H 0.191 0.809 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.630 15.547 5.792 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C 0.032 3.968 3 C -0.241 4.241 4 N -0.362 5.362 5 C -0.026 4.026 6 C 0.014 3.986 7 N -0.322 5.322 8 C 0.020 3.980 9 C -0.383 4.383 10 H 0.088 0.912 11 C -0.198 4.198 12 N -0.553 5.553 13 Si 0.736 3.264 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.368 3.632 18 O -0.401 6.401 19 C -0.179 4.179 20 C -0.132 4.132 21 C -0.156 4.156 22 C -0.031 4.031 23 N -0.144 5.144 24 N -0.127 5.127 25 H 0.287 0.713 26 C -0.059 4.059 27 C -0.231 4.231 28 C 0.004 3.996 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.013 0.987 43 H 0.063 0.937 44 H 0.229 0.771 45 H 0.147 0.853 46 H 0.208 0.792 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.077 16.062 6.013 24.203 hybrid contribution 0.871 -0.552 -0.172 1.045 sum -16.206 15.510 5.841 23.180 Atomic orbital electron populations 1.23373 0.95429 1.03838 1.04662 1.21158 0.93238 0.93371 0.89044 1.23003 1.01466 0.95814 1.03803 1.47786 1.32097 1.49308 1.06987 1.22647 0.83465 0.93371 1.03153 1.21190 0.86076 0.92942 0.98398 1.43981 1.28446 1.53197 1.06621 1.20831 0.99105 0.93863 0.84232 1.19245 1.23204 1.03921 0.91974 0.91221 1.25006 1.01297 0.95332 0.98182 1.70091 1.41279 1.07211 1.36746 0.86236 0.80980 0.76775 0.82414 1.21559 1.21783 1.20524 1.18096 0.76676 0.87007 0.81453 1.90745 1.54847 1.42209 1.52314 1.19804 1.08071 0.96419 0.93630 1.23799 0.92703 0.92329 1.04375 1.19730 1.06957 0.97053 0.91811 1.21159 0.95723 0.90863 0.95368 1.77638 1.29562 1.21551 0.85654 1.46298 1.45063 1.13731 1.07602 0.71268 1.22840 0.96663 0.86773 0.99641 1.19534 1.13475 0.98098 0.92018 1.20630 0.91241 0.92320 0.95406 0.90266 0.91547 0.88227 0.88404 0.90416 0.91862 0.91145 0.90648 0.90622 0.93574 0.94746 0.95621 0.93077 0.98679 0.93732 0.77150 0.85302 0.79197 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.15 7.77 37.16 0.29 -1.86 16 2 C 0.14 1.63 3.24 -67.92 -0.22 1.41 16 3 C -0.18 -1.94 8.05 37.16 0.30 -1.64 16 4 N -0.63 -9.93 2.31 -167.33 -0.39 -10.31 16 5 C 0.10 1.90 5.97 -4.04 -0.02 1.87 16 6 C 0.14 2.98 6.03 -4.04 -0.02 2.96 16 7 N -0.60 -15.25 2.93 -181.11 -0.53 -15.78 16 8 C 0.16 4.20 9.01 59.85 0.54 4.74 16 9 C -0.25 -6.90 9.70 -15.06 -0.15 -7.05 16 10 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 11 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 12 N -0.91 -26.53 10.48 55.49 0.58 -25.95 16 13 Si 0.91 21.73 29.57 -169.99 -5.03 16.71 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.58 9.64 6.10 -12.48 -0.08 9.56 16 18 O -0.53 -10.59 16.57 5.27 0.09 -10.50 16 19 C -0.17 -2.41 5.02 -105.06 -0.53 -2.93 16 20 C -0.11 -1.28 3.84 -39.61 -0.15 -1.43 16 21 C -0.13 -1.51 10.02 -39.48 -0.40 -1.91 16 22 C 0.12 1.53 7.49 -82.97 -0.62 0.91 16 23 N -0.32 -3.71 12.69 33.30 0.42 -3.28 16 24 N -0.43 -3.25 7.17 30.87 0.22 -3.03 16 25 H 0.44 1.56 8.96 -182.73 -1.64 -0.08 16 26 C 0.10 0.75 12.09 -16.57 -0.20 0.55 16 27 C -0.22 -2.53 6.32 -105.23 -0.66 -3.20 16 28 C 0.03 0.33 9.63 -38.69 -0.37 -0.05 16 29 H 0.08 0.56 7.94 -51.93 -0.41 0.15 16 30 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.10 1.08 3.54 -72.06 -0.26 0.83 16 32 H 0.10 1.15 7.80 -51.93 -0.40 0.75 16 33 H 0.08 0.97 6.03 -51.92 -0.31 0.65 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.57 6.14 -51.93 -0.32 0.25 16 36 H 0.08 1.67 7.43 -51.93 -0.39 1.28 16 37 H 0.08 1.52 7.84 -51.93 -0.41 1.11 16 38 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 39 H 0.03 0.71 7.87 -51.93 -0.41 0.30 16 40 H 0.03 0.70 7.54 -51.92 -0.39 0.31 16 41 H 0.05 1.39 6.96 -51.93 -0.36 1.03 16 42 H -0.01 -0.12 7.85 -51.93 -0.41 -0.53 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.21 2.10 0.58 -123.20 -0.07 2.02 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.19 0.61 8.06 -52.49 -0.42 0.18 16 47 H 0.13 1.65 7.85 -52.49 -0.41 1.24 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -35.25 369.35 -9.30 -44.54 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.84 Total: 0.20 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.39 Total: 1.84 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.31 Total: -58.36 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.25 -9.30 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755811812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.522 kcal (2) G-P(sol) polarization free energy of solvation -35.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds