Wall clock time and date at job start Tue Mar 31 2020 15:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46637 * 2 1 4 4 N 1.46502 * 109.46985 * 119.99781 * 2 1 3 5 5 C 1.46494 * 119.99855 * 140.38129 * 4 2 1 6 6 C 1.53006 * 109.46837 * 90.00048 * 5 4 2 7 7 N 1.46501 * 109.46967 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00463 * 269.99954 * 7 6 5 9 9 C 1.36939 * 119.99716 * 89.99853 * 7 6 5 10 10 H 1.08001 * 120.00054 * 20.08726 * 9 7 6 11 11 C 1.38814 * 120.00022 * 200.08894 * 9 7 6 12 12 N 1.31618 * 120.00207 * 11.66085 * 11 9 7 13 13 Si 1.86799 * 119.99868 * 191.66298 * 11 9 7 14 14 H 1.48502 * 109.46986 * 90.00279 * 13 11 9 15 15 H 1.48505 * 109.47101 * 209.99915 * 13 11 9 16 16 H 1.48493 * 109.47364 * 330.00122 * 13 11 9 17 17 C 1.34779 * 119.99826 * 320.37950 * 4 2 1 18 18 O 1.21606 * 119.99460 * 142.67016 * 17 4 2 19 19 C 1.47513 * 120.00330 * 322.67216 * 17 4 2 20 20 C 1.41045 * 119.39347 * 29.50404 * 19 17 4 21 21 C 1.35182 * 121.65031 * 179.97438 * 20 19 17 22 22 C 1.41374 * 119.93918 * 0.02626 * 21 20 19 23 23 N 1.31926 * 134.39806 * 180.02562 * 22 21 20 24 24 N 1.39926 * 109.06136 * 179.97438 * 23 22 21 25 25 H 0.97001 * 124.97984 * 180.02562 * 24 23 22 26 26 C 1.33817 * 110.02820 * 0.02562 * 24 23 22 27 27 C 1.38543 * 107.83765 * 359.97438 * 26 24 23 28 28 C 1.38226 * 119.39100 * 209.23191 * 19 17 4 29 29 H 1.08997 * 109.47078 * 51.32554 * 1 2 3 30 30 H 1.09007 * 109.46364 * 171.31756 * 1 2 3 31 31 H 1.08990 * 109.47113 * 291.31799 * 1 2 3 32 32 H 1.08994 * 109.47633 * 240.00192 * 2 1 3 33 33 H 1.09011 * 109.47081 * 105.30590 * 3 2 1 34 34 H 1.09001 * 109.47310 * 225.30661 * 3 2 1 35 35 H 1.08997 * 109.47508 * 345.30809 * 3 2 1 36 36 H 1.08997 * 109.47134 * 209.99908 * 5 4 2 37 37 H 1.08991 * 109.47262 * 330.00183 * 5 4 2 38 38 H 1.08997 * 109.47145 * 299.99853 * 6 5 4 39 39 H 1.08996 * 109.47285 * 60.00458 * 6 5 4 40 40 H 1.09010 * 109.46962 * 93.18802 * 8 7 6 41 41 H 1.09001 * 109.47383 * 213.18847 * 8 7 6 42 42 H 1.09000 * 109.46971 * 333.19031 * 8 7 6 43 43 H 0.96996 * 120.00254 * 179.97438 * 12 11 9 44 44 H 1.07997 * 119.16705 * 359.97438 * 20 19 17 45 45 H 1.08001 * 120.02938 * 180.02562 * 21 20 19 46 46 H 1.07991 * 126.08077 * 180.02562 * 26 24 23 47 47 H 1.07998 * 120.32594 * 0.02838 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.1839 -1.5736 1.1077 6 6 4.4569 -0.7653 1.3669 7 7 5.6225 -1.6485 1.2790 8 6 6.1106 -2.3387 2.4755 9 6 6.2558 -1.8289 0.0783 10 1 6.1262 -1.1069 -0.7144 11 6 7.0642 -2.9397 -0.1200 12 7 7.0452 -3.9306 0.7461 13 14 8.1793 -3.0282 -1.6160 14 1 9.5000 -2.4355 -1.2848 15 1 8.3598 -4.4470 -2.0157 16 1 7.5648 -2.2726 -2.7369 17 6 1.3953 -0.5134 2.3781 18 8 1.2761 -1.4468 3.1484 19 6 0.8579 0.8126 2.7372 20 6 0.4232 1.6831 1.7161 21 6 -0.0772 2.9079 1.9935 22 6 -0.1739 3.3433 3.3350 23 7 -0.6029 4.4458 3.9189 24 7 -0.4575 4.3154 5.3045 25 1 -0.7021 4.9917 5.9554 26 6 0.0684 3.1208 5.5997 27 6 0.2777 2.4434 4.4094 28 6 0.7845 1.1769 4.0686 29 1 -0.3633 0.6422 -0.8023 30 1 -0.3632 -1.0160 -0.1552 31 1 -0.3633 0.3736 0.9573 32 1 1.8935 -0.5138 -0.8899 33 1 2.4168 1.6947 0.9913 34 1 2.8425 1.5443 -0.7305 35 1 1.2239 2.1164 -0.2606 36 1 3.0978 -2.3647 1.8526 37 1 3.2304 -2.0153 0.1124 38 1 4.5430 0.0257 0.6220 39 1 4.4105 -0.3237 2.3623 40 1 5.6562 -3.3278 2.5351 41 1 7.1945 -2.4396 2.4201 42 1 5.8441 -1.7624 3.3615 43 1 7.6099 -4.7070 0.6074 44 1 0.4920 1.3630 0.6870 45 1 -0.4028 3.5531 1.1909 46 1 0.2895 2.7504 6.5897 47 1 1.1177 0.4975 4.8391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755811812.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:13 Heat of formation + Delta-G solvation = 158.324275 kcal Electronic energy + Delta-G solvation = -28924.125543 eV Core-core repulsion = 25112.711978 eV Total energy + Delta-G solvation = -3811.413565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.62853 -41.64628 -38.62272 -37.99101 -37.00826 -34.37345 -33.20653 -32.88979 -31.26650 -30.37965 -29.23761 -28.12751 -27.91057 -26.25880 -24.93688 -23.45674 -23.11791 -22.19946 -21.64883 -20.07020 -19.05032 -18.78365 -18.05543 -17.89123 -17.17914 -16.92244 -16.51229 -15.91130 -15.54093 -15.49168 -15.32909 -15.22138 -14.97343 -14.83168 -14.52882 -14.32877 -14.15082 -13.95434 -13.58918 -13.27116 -13.18774 -12.84956 -12.82475 -12.62356 -12.43378 -12.34748 -12.17895 -12.12785 -12.01851 -11.89508 -11.57206 -11.40621 -11.34934 -10.96986 -10.70494 -10.64337 -9.66604 -9.55711 -8.79784 -8.63180 -7.80927 -5.28217 -0.45151 0.45345 1.36274 1.49912 1.51134 1.60115 1.70171 1.83783 2.08135 2.54538 2.85005 3.24081 3.34697 3.60591 3.68605 3.79156 3.86495 3.92585 4.13874 4.14732 4.21103 4.29458 4.43744 4.54762 4.57957 4.65157 4.70688 4.71538 4.77239 4.83023 4.92177 4.97519 5.02809 5.13438 5.21687 5.25903 5.33382 5.38672 5.42653 5.49306 5.50773 5.61460 5.70730 5.78348 5.81259 6.24103 6.32741 6.54989 6.57005 7.08303 7.15114 7.85473 8.30797 9.23910 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019144 B = 0.002942 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.210501 B = 9515.477533 C = 9940.423370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 C -0.179 4.179 4 N -0.626 5.626 5 C 0.117 3.883 6 C 0.150 3.850 7 N -0.616 5.616 8 C 0.180 3.820 9 C -0.260 4.260 10 H 0.081 0.919 11 C -0.057 4.057 12 N -0.943 5.943 13 Si 0.973 3.027 14 H -0.288 1.288 15 H -0.298 1.298 16 H -0.263 1.263 17 C 0.577 3.423 18 O -0.574 6.574 19 C -0.199 4.199 20 C -0.105 4.105 21 C -0.139 4.139 22 C 0.107 3.893 23 N -0.348 5.348 24 N -0.411 5.411 25 H 0.462 0.538 26 C 0.136 3.864 27 C -0.256 4.256 28 C 0.029 3.971 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.036 0.964 40 H -0.002 1.002 41 H 0.028 0.972 42 H 0.018 0.982 43 H 0.247 0.753 44 H 0.226 0.774 45 H 0.150 0.850 46 H 0.240 0.760 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 18.561 5.351 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C 0.025 3.975 3 C -0.236 4.236 4 N -0.361 5.361 5 C -0.008 4.008 6 C 0.022 3.978 7 N -0.339 5.339 8 C 0.035 3.965 9 C -0.390 4.390 10 H 0.098 0.902 11 C -0.251 4.251 12 N -0.590 5.590 13 Si 0.801 3.199 14 H -0.215 1.215 15 H -0.225 1.225 16 H -0.187 1.187 17 C 0.370 3.630 18 O -0.454 6.454 19 C -0.204 4.204 20 C -0.125 4.125 21 C -0.160 4.160 22 C -0.047 4.047 23 N -0.176 5.176 24 N -0.111 5.111 25 H 0.310 0.690 26 C -0.025 4.025 27 C -0.266 4.266 28 C 0.008 3.992 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.047 0.953 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.241 0.759 45 H 0.168 0.832 46 H 0.256 0.744 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.318 19.168 5.549 27.088 hybrid contribution 1.143 -1.368 0.152 1.789 sum -17.176 17.800 5.701 25.384 Atomic orbital electron populations 1.23362 0.93611 1.04215 1.05722 1.21492 0.94759 0.94025 0.87263 1.22949 1.02702 0.95056 1.02920 1.47772 1.30950 1.48925 1.08431 1.22043 0.84699 0.92731 1.01323 1.21217 0.85159 0.92445 0.98947 1.44201 1.30138 1.53457 1.06131 1.20541 0.97358 0.93098 0.85549 1.19627 1.22932 1.03880 0.92522 0.90168 1.25825 1.02989 0.95162 1.01160 1.70277 1.42213 1.07734 1.38754 0.85171 0.78886 0.76302 0.79508 1.21463 1.22501 1.18734 1.18619 0.75911 0.87719 0.80778 1.90710 1.57157 1.43922 1.53581 1.19617 1.10601 0.95370 0.94852 1.23806 0.92475 0.91986 1.04258 1.19985 1.06664 0.97075 0.92308 1.21471 0.95850 0.91247 0.96180 1.77578 1.30804 1.21753 0.87469 1.46368 1.43624 1.14233 1.06918 0.68976 1.23566 0.92968 0.85511 1.00446 1.19754 1.15329 0.97918 0.93599 1.20707 0.90481 0.92967 0.95072 0.86375 0.92516 0.88899 0.88145 0.92125 0.91583 0.87894 0.94174 0.91411 0.92002 0.94598 0.98412 0.95308 0.96336 0.94352 0.75886 0.83214 0.74437 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.86 7.77 71.98 0.56 -3.30 16 2 C 0.13 2.90 3.24 44.99 0.15 3.05 16 3 C -0.18 -3.40 8.05 71.98 0.58 -2.82 16 4 N -0.63 -20.17 2.31 -801.57 -1.85 -22.03 16 5 C 0.12 4.72 5.97 86.38 0.52 5.24 16 6 C 0.15 6.31 6.03 86.38 0.52 6.83 16 7 N -0.62 -31.83 2.93 -726.92 -2.13 -33.96 16 8 C 0.18 9.50 9.01 127.77 1.15 10.65 16 9 C -0.26 -14.16 9.70 84.03 0.81 -13.35 16 10 H 0.08 4.13 7.84 -2.91 -0.02 4.10 16 11 C -0.06 -3.19 5.13 84.86 0.43 -2.76 16 12 N -0.94 -56.71 10.48 21.65 0.23 -56.49 16 13 Si 0.97 44.89 29.57 68.60 2.03 46.91 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 17 C 0.58 19.86 6.10 86.69 0.53 20.39 16 18 O -0.57 -24.44 16.57 -4.05 -0.07 -24.51 16 19 C -0.20 -5.50 5.02 -20.15 -0.10 -5.60 16 20 C -0.11 -2.26 3.84 22.25 0.09 -2.17 16 21 C -0.14 -2.86 10.02 22.34 0.22 -2.63 16 22 C 0.11 2.44 7.49 42.27 0.32 2.76 16 23 N -0.35 -7.35 12.69 -48.54 -0.62 -7.96 16 24 N -0.41 -4.89 7.17 -56.26 -0.40 -5.30 16 25 H 0.46 1.56 8.96 -213.43 -1.91 -0.35 16 26 C 0.14 1.58 12.09 84.46 1.02 2.60 16 27 C -0.26 -5.39 6.32 -20.26 -0.13 -5.52 16 28 C 0.03 0.74 9.63 22.85 0.22 0.96 16 29 H 0.12 1.23 7.94 -2.39 -0.02 1.21 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.90 3.54 -21.30 -0.08 1.82 16 32 H 0.10 2.24 7.80 -2.39 -0.02 2.23 16 33 H 0.06 1.42 6.03 -2.38 -0.01 1.40 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.10 1.29 6.14 -2.39 -0.01 1.28 16 36 H 0.04 1.89 7.43 -2.39 -0.02 1.87 16 37 H 0.07 2.80 7.84 -2.39 -0.02 2.78 16 38 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 39 H 0.04 1.49 7.87 -2.39 -0.02 1.47 16 40 H 0.00 -0.14 7.54 -2.38 -0.02 -0.16 16 41 H 0.03 1.61 6.96 -2.39 -0.02 1.59 16 42 H 0.02 0.86 7.85 -2.39 -0.02 0.84 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.23 3.96 0.58 -69.34 -0.04 3.92 16 45 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 46 H 0.24 0.30 8.06 -2.91 -0.02 0.28 16 47 H 0.13 3.26 7.85 -2.91 -0.02 3.24 16 Total: -1.00 -80.11 369.35 3.07 -77.04 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -1.00 Total: 11.96 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.89 Total: 14.33 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -4.77 Total: -125.74 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.07 Total: -24.51 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.11 3.07 -77.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755811812.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.362 kcal (2) G-P(sol) polarization free energy of solvation -80.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds