Wall clock time and date at job start Tue Mar 31 2020 15:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47549 * 2 1 4 4 N 1.46501 * 109.46984 * 120.00073 * 2 1 3 5 5 C 1.46500 * 120.00039 * 305.53396 * 4 2 1 6 6 C 1.53000 * 109.46955 * 269.99819 * 5 4 2 7 7 N 1.46498 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00314 * 270.00302 * 7 6 5 9 9 C 1.36938 * 119.99900 * 90.00627 * 7 6 5 10 10 H 1.08001 * 119.99781 * 23.43222 * 9 7 6 11 11 C 1.38815 * 120.00458 * 203.44465 * 9 7 6 12 12 N 1.31620 * 119.99695 * 9.88267 * 11 9 7 13 13 Si 1.86797 * 119.99972 * 189.89069 * 11 9 7 14 14 H 1.48493 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47126 * 119.99651 * 13 11 9 16 16 H 1.48506 * 109.46778 * 239.99273 * 13 11 9 17 17 C 1.34777 * 120.00094 * 125.53401 * 4 2 1 18 18 O 1.21715 * 120.00394 * 185.18658 * 17 4 2 19 19 C 1.46574 * 120.00173 * 5.17962 * 17 4 2 20 20 C 1.40555 * 126.57622 * 44.44491 * 19 17 4 21 21 N 1.30739 * 108.74495 * 179.97438 * 20 19 17 22 22 N 1.40019 * 109.60314 * 0.02562 * 21 20 19 23 23 C 1.36236 * 132.01395 * 180.02562 * 22 21 20 24 24 C 1.35186 * 120.70994 * 180.02562 * 23 22 21 25 25 C 1.40160 * 120.31536 * 359.97438 * 24 23 22 26 26 C 1.36450 * 119.40892 * 359.97438 * 25 24 23 27 27 C 1.36573 * 107.90631 * 0.02562 * 22 21 20 28 28 H 1.08998 * 109.47408 * 300.00192 * 1 2 3 29 29 H 1.08996 * 109.47174 * 59.99794 * 1 2 3 30 30 H 1.09005 * 109.47481 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 239.99490 * 2 1 3 32 32 H 1.09000 * 109.47487 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46917 * 299.99945 * 3 2 1 34 34 H 1.08998 * 109.46922 * 59.99510 * 3 2 1 35 35 H 1.08995 * 109.46919 * 30.00241 * 5 4 2 36 36 H 1.09003 * 109.47192 * 150.00335 * 5 4 2 37 37 H 1.09000 * 109.47411 * 300.00368 * 6 5 4 38 38 H 1.09003 * 109.46749 * 60.00245 * 6 5 4 39 39 H 1.09001 * 109.47011 * 94.84952 * 8 7 6 40 40 H 1.09001 * 109.46923 * 214.84914 * 8 7 6 41 41 H 1.08998 * 109.46942 * 334.84787 * 8 7 6 42 42 H 0.96998 * 119.99856 * 180.02562 * 12 11 9 43 43 H 1.08005 * 125.62800 * 0.03336 * 20 19 17 44 44 H 1.08001 * 119.64479 * 359.97438 * 23 22 21 45 45 H 1.07995 * 119.84500 * 179.70035 * 24 23 22 46 46 H 1.08004 * 120.29503 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.37247 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5672 -0.2647 2.5234 6 6 2.5170 0.8052 3.0657 7 7 2.0656 1.2315 4.3926 8 6 1.1264 2.3482 4.5231 9 6 2.5217 0.5863 5.5110 10 1 3.4572 0.0476 5.4798 11 6 1.7814 0.6242 6.6847 12 7 0.5578 1.1090 6.6756 13 14 2.5220 -0.0125 8.2770 14 1 3.9006 -0.5015 8.0210 15 1 2.5632 1.0844 9.2771 16 1 1.6907 -1.1270 8.7987 17 6 2.8824 -1.7178 1.0757 18 8 3.2150 -2.3521 2.0598 19 6 3.4218 -2.0713 -0.2406 20 6 3.9095 -1.1809 -1.2126 21 7 4.3042 -1.8686 -2.2521 22 7 4.0974 -3.2335 -2.0184 23 6 4.3408 -4.3362 -2.7806 24 6 4.0455 -5.5725 -2.3202 25 6 3.4830 -5.7377 -1.0471 26 6 3.2365 -4.6395 -0.2759 27 6 3.5499 -3.3684 -0.7745 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.5604 0.1464 2.4503 36 1 1.5619 -1.1212 3.1975 37 1 3.5238 0.3940 3.1387 38 1 2.5223 1.6617 2.3915 39 1 0.1090 1.9620 4.5847 40 1 1.3562 2.9125 5.4269 41 1 1.2152 3.0010 3.6547 42 1 0.0407 1.1359 7.4958 43 1 3.9520 -0.1060 -1.1162 44 1 4.7736 -4.2214 -3.7634 45 1 4.2398 -6.4367 -2.9381 46 1 3.2468 -6.7256 -0.6799 47 1 2.8039 -4.7488 0.7076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755814958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:18 Heat of formation + Delta-G solvation = 106.608225 kcal Electronic energy + Delta-G solvation = -28860.809989 eV Core-core repulsion = 25047.153848 eV Total energy + Delta-G solvation = -3813.656141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.35498 -39.53088 -37.43306 -36.51141 -35.31392 -33.18742 -31.87229 -31.07277 -30.95168 -29.45170 -27.71818 -27.17904 -25.78155 -24.17297 -24.06545 -22.71585 -22.52389 -21.29365 -20.37748 -18.84340 -17.81922 -16.99224 -16.70107 -16.57894 -16.10272 -15.83262 -15.39331 -15.02401 -14.79849 -14.37501 -14.16531 -13.75321 -13.50682 -13.40287 -13.20629 -12.83585 -12.61203 -12.48132 -12.22230 -12.17212 -12.09687 -12.00224 -11.64738 -11.40573 -11.08435 -11.04797 -10.92327 -10.77823 -10.69967 -10.57788 -10.38982 -10.01555 -9.84866 -9.66852 -9.57980 -9.44000 -8.52920 -8.27030 -7.79743 -6.64645 -5.63901 -3.09809 0.41903 0.76797 1.92364 2.17262 2.96939 3.26831 3.44833 3.51930 3.52840 3.56940 3.97858 4.31405 4.41647 4.56887 4.60503 4.80058 4.87928 4.99180 5.10317 5.16122 5.17050 5.34311 5.36488 5.53018 5.65460 5.66928 5.73422 5.83406 5.86461 5.88900 5.92024 5.95909 6.06348 6.17222 6.23317 6.28391 6.38944 6.50963 6.55339 6.78266 6.78952 6.96568 7.19394 7.24638 7.44401 7.79253 7.87125 7.93240 8.49659 8.65322 9.34001 9.95794 10.43952 11.41242 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.003262 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.308721 B = 8582.723854 C = 9708.364235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.126 3.874 3 C -0.170 4.170 4 N -0.597 5.597 5 C 0.094 3.906 6 C 0.140 3.860 7 N -0.599 5.599 8 C 0.164 3.836 9 C -0.248 4.248 10 H 0.070 0.930 11 C 0.001 3.999 12 N -0.911 5.911 13 Si 0.904 3.096 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.591 3.409 18 O -0.536 6.536 19 C -0.293 4.293 20 C 0.114 3.886 21 N -0.321 5.321 22 N -0.268 5.268 23 C 0.108 3.892 24 C -0.161 4.161 25 C -0.081 4.081 26 C -0.103 4.103 27 C 0.149 3.851 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.029 0.971 40 H 0.044 0.956 41 H -0.005 1.005 42 H 0.250 0.750 43 H 0.199 0.801 44 H 0.170 0.830 45 H 0.156 0.844 46 H 0.144 0.856 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -8.952 -23.174 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 C -0.228 4.228 4 N -0.330 5.330 5 C -0.030 4.030 6 C 0.011 3.989 7 N -0.322 5.322 8 C 0.020 3.980 9 C -0.377 4.377 10 H 0.087 0.913 11 C -0.197 4.197 12 N -0.557 5.557 13 Si 0.735 3.265 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.378 3.622 18 O -0.413 6.413 19 C -0.308 4.308 20 C -0.065 4.065 21 N -0.142 5.142 22 N -0.033 5.033 23 C -0.018 4.018 24 C -0.182 4.182 25 C -0.104 4.104 26 C -0.123 4.123 27 C 0.029 3.971 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.215 0.785 44 H 0.187 0.813 45 H 0.174 0.826 46 H 0.162 0.838 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.455 -9.001 -23.674 25.562 hybrid contribution -0.130 -0.368 1.626 1.672 sum 3.325 -9.369 -22.048 24.185 Atomic orbital electron populations 1.22140 0.94946 1.02310 1.02625 1.21221 0.94658 0.93429 0.88503 1.22388 1.01394 0.96056 1.02988 1.48086 1.44622 1.32530 1.07725 1.22572 0.99074 1.00577 0.80810 1.21313 0.96253 0.94247 0.87053 1.43968 1.53103 1.34756 1.00387 1.20813 0.93460 0.87787 0.95957 1.19322 1.01877 1.28047 0.88491 0.91258 1.25042 0.95291 1.00473 0.98897 1.70062 1.08689 1.50657 1.26312 0.86169 0.78597 0.78089 0.83690 1.20268 1.21759 1.21739 1.16976 0.78713 0.79973 0.86540 1.90833 1.59602 1.51915 1.38929 1.19876 1.20591 0.90593 0.99706 1.24134 0.92935 1.00385 0.89007 1.77562 1.29799 0.82803 1.24070 1.46017 1.39189 1.06471 1.11631 1.21535 0.99838 0.83215 0.97239 1.20901 1.03499 0.95983 0.97862 1.21285 0.96168 0.99554 0.93361 1.20787 1.01012 0.88758 1.01714 1.19277 0.96475 0.95147 0.86190 0.91402 0.91789 0.92513 0.89420 0.92353 0.91817 0.90788 0.91237 0.89728 0.93803 0.93982 0.95281 0.93767 0.98664 0.93945 0.78498 0.81270 0.82617 0.83773 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.06 37.16 0.34 -1.56 16 2 C 0.13 1.57 2.58 -67.93 -0.18 1.39 16 3 C -0.17 -1.90 8.16 37.16 0.30 -1.60 16 4 N -0.60 -9.77 2.40 -167.68 -0.40 -10.17 16 5 C 0.09 1.86 5.33 -4.04 -0.02 1.84 16 6 C 0.14 3.01 5.78 -4.04 -0.02 2.98 16 7 N -0.60 -15.53 2.92 -181.12 -0.53 -16.06 16 8 C 0.16 4.08 9.01 59.85 0.54 4.62 16 9 C -0.25 -7.13 9.67 -15.06 -0.15 -7.27 16 10 H 0.07 2.02 7.84 -52.49 -0.41 1.61 16 11 C 0.00 0.02 5.16 -17.43 -0.09 -0.07 16 12 N -0.91 -27.02 10.57 55.49 0.59 -26.44 16 13 Si 0.90 22.83 29.57 -169.99 -5.03 17.80 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 C 0.59 10.56 7.51 -12.90 -0.10 10.46 16 18 O -0.54 -11.81 16.66 5.18 0.09 -11.72 16 19 C -0.29 -4.37 5.08 -104.68 -0.53 -4.90 16 20 C 0.11 1.46 9.60 -17.14 -0.16 1.29 16 21 N -0.32 -4.13 12.57 30.75 0.39 -3.75 16 22 N -0.27 -3.20 3.86 -10.55 -0.04 -3.24 16 23 C 0.11 0.86 11.17 -16.68 -0.19 0.67 16 24 C -0.16 -0.99 9.98 -39.95 -0.40 -1.39 16 25 C -0.08 -0.62 10.09 -39.51 -0.40 -1.02 16 26 C -0.10 -1.18 10.07 -39.53 -0.40 -1.58 16 27 C 0.15 2.02 6.79 -84.07 -0.57 1.45 16 28 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.02 4.81 -51.93 -0.25 0.77 16 32 H 0.06 0.63 7.12 -51.93 -0.37 0.26 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 0.96 5.99 -51.93 -0.31 0.65 16 35 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 36 H 0.08 2.02 7.36 -51.93 -0.38 1.64 16 37 H 0.04 1.02 8.04 -51.93 -0.42 0.60 16 38 H 0.04 0.80 5.14 -51.93 -0.27 0.53 16 39 H 0.03 0.77 7.36 -51.93 -0.38 0.39 16 40 H 0.04 1.18 7.27 -51.93 -0.38 0.80 16 41 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.20 2.02 6.31 -52.48 -0.33 1.69 16 44 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 46 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 47 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -35.48 377.61 -7.93 -43.41 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.66 Total: -0.85 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.02 Total: 5.32 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.00 Total: -59.65 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.48 -7.93 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.022 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds