Wall clock time and date at job start Tue Mar 31 2020 15:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47549 * 2 1 4 4 N 1.46501 * 109.46984 * 120.00073 * 2 1 3 5 5 C 1.46500 * 120.00039 * 305.53396 * 4 2 1 6 6 C 1.53000 * 109.46955 * 269.99819 * 5 4 2 7 7 N 1.46498 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00314 * 270.00302 * 7 6 5 9 9 C 1.36938 * 119.99900 * 90.00627 * 7 6 5 10 10 H 1.08001 * 119.99781 * 23.43222 * 9 7 6 11 11 C 1.38815 * 120.00458 * 203.44465 * 9 7 6 12 12 N 1.31620 * 119.99695 * 9.88267 * 11 9 7 13 13 Si 1.86797 * 119.99972 * 189.89069 * 11 9 7 14 14 H 1.48493 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47126 * 119.99651 * 13 11 9 16 16 H 1.48506 * 109.46778 * 239.99273 * 13 11 9 17 17 C 1.34777 * 120.00094 * 125.53401 * 4 2 1 18 18 O 1.21715 * 120.00394 * 185.18658 * 17 4 2 19 19 C 1.46574 * 120.00173 * 5.17962 * 17 4 2 20 20 C 1.40555 * 126.57622 * 44.44491 * 19 17 4 21 21 N 1.30739 * 108.74495 * 179.97438 * 20 19 17 22 22 N 1.40019 * 109.60314 * 0.02562 * 21 20 19 23 23 C 1.36236 * 132.01395 * 180.02562 * 22 21 20 24 24 C 1.35186 * 120.70994 * 180.02562 * 23 22 21 25 25 C 1.40160 * 120.31536 * 359.97438 * 24 23 22 26 26 C 1.36450 * 119.40892 * 359.97438 * 25 24 23 27 27 C 1.36573 * 107.90631 * 0.02562 * 22 21 20 28 28 H 1.08998 * 109.47408 * 300.00192 * 1 2 3 29 29 H 1.08996 * 109.47174 * 59.99794 * 1 2 3 30 30 H 1.09005 * 109.47481 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 239.99490 * 2 1 3 32 32 H 1.09000 * 109.47487 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.46917 * 299.99945 * 3 2 1 34 34 H 1.08998 * 109.46922 * 59.99510 * 3 2 1 35 35 H 1.08995 * 109.46919 * 30.00241 * 5 4 2 36 36 H 1.09003 * 109.47192 * 150.00335 * 5 4 2 37 37 H 1.09000 * 109.47411 * 300.00368 * 6 5 4 38 38 H 1.09003 * 109.46749 * 60.00245 * 6 5 4 39 39 H 1.09001 * 109.47011 * 94.84952 * 8 7 6 40 40 H 1.09001 * 109.46923 * 214.84914 * 8 7 6 41 41 H 1.08998 * 109.46942 * 334.84787 * 8 7 6 42 42 H 0.96998 * 119.99856 * 180.02562 * 12 11 9 43 43 H 1.08005 * 125.62800 * 0.03336 * 20 19 17 44 44 H 1.08001 * 119.64479 * 359.97438 * 23 22 21 45 45 H 1.07995 * 119.84500 * 179.70035 * 24 23 22 46 46 H 1.08004 * 120.29503 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.37247 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5672 -0.2647 2.5234 6 6 2.5170 0.8052 3.0657 7 7 2.0656 1.2315 4.3926 8 6 1.1264 2.3482 4.5231 9 6 2.5217 0.5863 5.5110 10 1 3.4572 0.0476 5.4798 11 6 1.7814 0.6242 6.6847 12 7 0.5578 1.1090 6.6756 13 14 2.5220 -0.0125 8.2770 14 1 3.9006 -0.5015 8.0210 15 1 2.5632 1.0844 9.2771 16 1 1.6907 -1.1270 8.7987 17 6 2.8824 -1.7178 1.0757 18 8 3.2150 -2.3521 2.0598 19 6 3.4218 -2.0713 -0.2406 20 6 3.9095 -1.1809 -1.2126 21 7 4.3042 -1.8686 -2.2521 22 7 4.0974 -3.2335 -2.0184 23 6 4.3408 -4.3362 -2.7806 24 6 4.0455 -5.5725 -2.3202 25 6 3.4830 -5.7377 -1.0471 26 6 3.2365 -4.6395 -0.2759 27 6 3.5499 -3.3684 -0.7745 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.5604 0.1464 2.4503 36 1 1.5619 -1.1212 3.1975 37 1 3.5238 0.3940 3.1387 38 1 2.5223 1.6617 2.3915 39 1 0.1090 1.9620 4.5847 40 1 1.3562 2.9125 5.4269 41 1 1.2152 3.0010 3.6547 42 1 0.0407 1.1359 7.4958 43 1 3.9520 -0.1060 -1.1162 44 1 4.7736 -4.2214 -3.7634 45 1 4.2398 -6.4367 -2.9381 46 1 3.2468 -6.7256 -0.6799 47 1 2.8039 -4.7488 0.7076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755814958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:17 Heat of formation + Delta-G solvation = 84.234068 kcal Electronic energy + Delta-G solvation = -28861.780205 eV Core-core repulsion = 25047.153848 eV Total energy + Delta-G solvation = -3814.626357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.23452 -40.84719 -38.25102 -38.02462 -37.10580 -34.11511 -33.60471 -32.50363 -31.86411 -30.72926 -29.11305 -28.13831 -27.90610 -25.62859 -24.88443 -24.03458 -23.46881 -22.44097 -22.17419 -20.01065 -18.94247 -18.73976 -17.80258 -17.57127 -17.14717 -16.89945 -16.71048 -16.47984 -15.91186 -15.70074 -15.52778 -15.20828 -15.00701 -14.88822 -14.45639 -14.29401 -13.84666 -13.79607 -13.26562 -13.23180 -13.14348 -13.04396 -12.90794 -12.83396 -12.75204 -12.72413 -12.37612 -12.15585 -12.04769 -12.02441 -11.98622 -11.80850 -11.56735 -11.33507 -10.84995 -10.68849 -10.46308 -9.76299 -8.79201 -8.65943 -7.84979 -5.33622 -0.33980 -0.01360 1.11205 1.15181 1.42187 1.43673 1.54892 1.93201 2.12112 2.42511 2.50988 3.13672 3.29091 3.51340 3.75128 3.80068 3.86285 3.88343 3.96769 4.09925 4.16970 4.22207 4.26009 4.40970 4.49894 4.57931 4.60018 4.69962 4.75813 4.81640 4.85888 4.96342 5.00766 5.03458 5.06037 5.14437 5.20912 5.22670 5.33547 5.37661 5.39771 5.47386 5.61085 5.70105 5.74599 5.76812 6.32627 6.35676 6.55629 7.15301 7.28740 7.85574 8.26732 9.17746 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.003262 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.308721 B = 8582.723854 C = 9708.364235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 C -0.167 4.167 4 N -0.593 5.593 5 C 0.115 3.885 6 C 0.147 3.853 7 N -0.615 5.615 8 C 0.179 3.821 9 C -0.264 4.264 10 H 0.055 0.945 11 C -0.047 4.047 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.290 1.290 17 C 0.590 3.410 18 O -0.595 6.595 19 C -0.338 4.338 20 C 0.125 3.875 21 N -0.335 5.335 22 N -0.270 5.270 23 C 0.098 3.902 24 C -0.143 4.143 25 C -0.047 4.047 26 C -0.151 4.151 27 C 0.142 3.858 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.008 0.992 40 H 0.018 0.982 41 H 0.035 0.965 42 H 0.249 0.751 43 H 0.216 0.784 44 H 0.205 0.795 45 H 0.207 0.793 46 H 0.178 0.822 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -10.102 -26.774 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.021 3.979 3 C -0.225 4.225 4 N -0.324 5.324 5 C -0.010 4.010 6 C 0.020 3.980 7 N -0.339 5.339 8 C 0.034 3.966 9 C -0.394 4.394 10 H 0.073 0.927 11 C -0.242 4.242 12 N -0.580 5.580 13 Si 0.794 3.206 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.217 1.217 17 C 0.380 3.620 18 O -0.476 6.476 19 C -0.353 4.353 20 C -0.054 4.054 21 N -0.156 5.156 22 N -0.034 5.034 23 C -0.027 4.027 24 C -0.164 4.164 25 C -0.070 4.070 26 C -0.170 4.170 27 C 0.020 3.980 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.038 0.962 38 H 0.093 0.907 39 H 0.026 0.974 40 H 0.036 0.964 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.233 0.767 44 H 0.222 0.778 45 H 0.224 0.776 46 H 0.196 0.804 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.143 -10.127 -27.347 29.455 hybrid contribution -0.301 -0.242 2.533 2.562 sum 3.842 -10.369 -24.814 27.166 Atomic orbital electron populations 1.22130 0.94191 1.01960 1.03394 1.21526 0.95226 0.94141 0.87030 1.22367 1.01696 0.94721 1.03711 1.48060 1.44195 1.32624 1.07531 1.21936 0.98942 0.97986 0.82123 1.21333 0.94995 0.95669 0.85990 1.44157 1.53269 1.35247 1.01238 1.20595 0.91940 0.87575 0.96477 1.19452 1.01683 1.28192 0.90079 0.92702 1.25735 0.95794 1.01035 1.01666 1.70203 1.09505 1.51463 1.26832 0.85231 0.77829 0.77546 0.80043 1.19995 1.20893 1.21661 1.17475 0.78045 0.79275 0.87238 1.90780 1.61741 1.53951 1.41142 1.19563 1.24328 0.92278 0.99084 1.24317 0.91905 1.01018 0.88127 1.77485 1.30638 0.83424 1.24098 1.46268 1.38662 1.07047 1.11377 1.22486 0.99259 0.82677 0.98305 1.21550 1.00794 0.96891 0.97133 1.21818 0.92419 0.99695 0.93115 1.20792 1.04466 0.89622 1.02161 1.19453 0.96220 0.95332 0.86953 0.92956 0.88558 0.93482 0.87952 0.91977 0.88413 0.92581 0.90626 0.94620 0.96157 0.90663 0.97400 0.96350 0.94633 0.94123 0.76729 0.77788 0.77567 0.80412 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.06 71.98 0.65 -2.92 16 2 C 0.12 2.99 2.58 44.99 0.12 3.11 16 3 C -0.17 -3.41 8.16 71.98 0.59 -2.82 16 4 N -0.59 -20.38 2.40 -802.63 -1.93 -22.31 16 5 C 0.12 4.89 5.33 86.38 0.46 5.35 16 6 C 0.15 6.59 5.78 86.38 0.50 7.09 16 7 N -0.62 -33.03 2.92 -726.93 -2.13 -35.15 16 8 C 0.18 9.02 9.01 127.77 1.15 10.17 16 9 C -0.26 -15.83 9.67 84.03 0.81 -15.02 16 10 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 11 C -0.05 -2.80 5.16 84.86 0.44 -2.36 16 12 N -0.93 -56.93 10.57 21.65 0.23 -56.71 16 13 Si 0.97 48.26 29.57 68.60 2.03 50.29 16 14 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 C 0.59 22.66 7.51 86.42 0.65 23.31 16 18 O -0.59 -28.84 16.66 -4.40 -0.07 -28.91 16 19 C -0.34 -10.47 5.08 -19.90 -0.10 -10.57 16 20 C 0.13 3.14 9.60 85.42 0.82 3.96 16 21 N -0.34 -8.17 12.57 -56.62 -0.71 -8.89 16 22 N -0.27 -5.99 3.86 -187.29 -0.72 -6.71 16 23 C 0.10 1.18 11.17 83.31 0.93 2.12 16 24 C -0.14 -1.06 9.98 22.03 0.22 -0.84 16 25 C -0.05 -0.59 10.09 22.32 0.23 -0.36 16 26 C -0.15 -3.49 10.07 22.30 0.22 -3.26 16 27 C 0.14 3.88 6.79 39.49 0.27 4.14 16 28 H 0.05 1.34 6.51 -2.39 -0.02 1.33 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 2.27 4.81 -2.39 -0.01 2.26 16 32 H 0.06 1.23 7.12 -2.39 -0.02 1.21 16 33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.06 1.36 5.99 -2.39 -0.01 1.35 16 35 H 0.08 3.08 6.15 -2.39 -0.01 3.07 16 36 H 0.04 1.85 7.36 -2.39 -0.02 1.83 16 37 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 38 H 0.08 2.85 5.14 -2.39 -0.01 2.84 16 39 H 0.01 0.42 7.36 -2.39 -0.02 0.40 16 40 H 0.02 0.98 7.27 -2.39 -0.02 0.97 16 41 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.22 4.17 6.31 -2.91 -0.02 4.16 16 44 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.21 -0.47 8.06 -2.91 -0.02 -0.49 16 46 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -84.37 377.61 5.63 -78.74 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.98 Total: 8.55 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 7.95 Total: 21.09 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -5.26 Total: -129.76 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.07 Total: -28.91 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -84.37 5.63 -78.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.972 kcal (2) G-P(sol) polarization free energy of solvation -84.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds