Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 119.99982 * 2 1 4 4 C 1.38206 * 120.00240 * 180.02562 * 3 2 1 5 5 C 1.38264 * 119.99443 * 359.81162 * 4 3 2 6 6 C 1.38209 * 120.00459 * 0.44471 * 5 4 3 7 7 C 1.50697 * 120.00202 * 179.79100 * 6 5 4 8 8 C 1.53007 * 109.46504 * 269.72306 * 7 6 5 9 9 C 1.50707 * 109.46507 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00549 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99435 * 180.02562 * 9 8 7 12 12 C 1.46923 * 120.63132 * 354.21408 * 11 9 8 13 13 C 1.53195 * 108.77743 * 126.37340 * 12 11 9 14 14 C 1.53042 * 109.31533 * 54.62819 * 13 12 11 15 15 H 1.08997 * 109.45666 * 58.64655 * 14 13 12 16 16 N 1.46498 * 109.45854 * 178.61794 * 14 13 12 17 17 C 1.36934 * 119.99894 * 275.00007 * 16 14 13 18 18 H 1.08003 * 120.00140 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99978 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99769 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47550 * 59.99968 * 21 19 17 23 23 H 1.48506 * 109.47265 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47180 * 299.99612 * 21 19 17 25 25 C 1.53036 * 109.53724 * 298.64134 * 14 13 12 26 26 C 1.46930 * 120.62763 * 174.19104 * 11 9 8 27 27 H 1.09000 * 109.58650 * 113.69980 * 26 11 9 28 28 C 1.52996 * 109.58782 * 353.41414 * 26 11 9 29 29 C 1.38210 * 120.00009 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47468 * 269.97568 * 1 2 3 31 31 H 1.09003 * 109.47619 * 29.97699 * 1 2 3 32 32 H 1.09008 * 109.47335 * 149.97716 * 1 2 3 33 33 H 1.08000 * 119.99726 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.00396 * 179.97438 * 4 3 2 35 35 H 1.08004 * 119.99346 * 180.23027 * 5 4 3 36 36 H 1.09000 * 109.47165 * 149.72560 * 7 6 5 37 37 H 1.08998 * 109.47249 * 29.72329 * 7 6 5 38 38 H 1.09000 * 109.47203 * 60.00277 * 8 7 6 39 39 H 1.08998 * 109.47387 * 299.99938 * 8 7 6 40 40 H 1.08994 * 109.58975 * 6.57759 * 12 11 9 41 41 H 1.09002 * 109.70019 * 246.22007 * 12 11 9 42 42 H 1.09003 * 109.49533 * 294.68232 * 13 12 11 43 43 H 1.08995 * 109.49954 * 174.58609 * 13 12 11 44 44 H 0.96996 * 120.00135 * 95.00271 * 16 14 13 45 45 H 0.96997 * 120.00063 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.49813 * 181.31597 * 25 14 13 47 47 H 1.09000 * 109.50093 * 301.40835 * 25 14 13 48 48 H 1.09008 * 109.46935 * 65.78550 * 28 26 11 49 49 H 1.08995 * 109.47648 * 185.78887 * 28 26 11 50 50 H 1.09003 * 109.47715 * 305.79050 * 28 26 11 51 51 H 1.07997 * 119.99968 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0000 0.0029 6 6 3.5806 -1.1969 -0.0025 7 6 4.3341 -2.5020 -0.0035 8 6 4.5876 -2.9432 -1.4465 9 6 5.3406 -4.2487 -1.4476 10 8 5.6449 -4.7741 -0.3978 11 7 5.6767 -4.8317 -2.6153 12 6 5.2083 -4.2753 -3.8919 13 6 6.4183 -4.0450 -4.8029 14 6 7.2064 -5.3500 -4.9374 15 1 6.5585 -6.1249 -5.3471 16 7 8.3457 -5.1418 -5.8344 17 6 8.1803 -5.2553 -7.1890 18 1 7.2098 -5.4979 -7.5961 19 6 9.2601 -5.0586 -8.0390 20 7 10.4429 -4.7634 -7.5428 21 14 9.0343 -5.2127 -9.8868 22 1 8.0298 -4.2206 -10.3473 23 1 10.3298 -4.9583 -10.5667 24 1 8.5640 -6.5824 -10.2155 25 6 7.7140 -5.7854 -3.5609 26 6 6.5188 -6.0356 -2.6359 27 1 5.9386 -6.8811 -3.0055 28 6 7.0189 -6.3359 -1.2215 29 6 2.1980 -1.1969 -0.0005 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6582 2.1327 -0.0004 34 1 4.1204 2.1327 -0.0010 35 1 5.3516 0.0001 0.0062 36 1 3.7455 -3.2618 0.5107 37 1 5.2870 -2.3718 0.5093 38 1 5.1762 -2.1834 -1.9607 39 1 3.6347 -3.0734 -1.9594 40 1 4.6999 -3.3280 -3.7131 41 1 4.5209 -4.9749 -4.3675 42 1 7.0585 -3.2764 -4.3700 43 1 6.0769 -3.7231 -5.7867 44 1 9.2173 -4.9236 -5.4689 45 1 11.1973 -4.6256 -8.1367 46 1 8.2949 -6.7024 -3.6607 47 1 8.3420 -5.0005 -3.1396 48 1 6.1740 -6.6017 -0.5861 49 1 7.7244 -7.1661 -1.2541 50 1 7.5146 -5.4537 -0.8163 51 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044691237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = -7.284521 kcal Electronic energy + Delta-G solvation = -28061.455827 eV Core-core repulsion = 24346.401269 eV Total energy + Delta-G solvation = -3715.054558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47750 -39.61595 -37.46028 -34.73371 -34.47717 -32.92457 -32.29791 -31.92669 -29.93772 -29.15162 -27.19620 -26.96452 -25.09949 -24.15444 -22.91359 -22.31837 -21.59934 -20.46049 -20.04215 -18.79459 -17.15095 -16.91469 -16.50531 -16.12034 -15.82553 -15.23274 -14.99427 -14.81288 -14.20287 -14.02243 -13.93265 -13.78120 -13.67009 -13.36305 -13.32348 -12.92328 -12.90983 -12.62299 -12.53342 -12.42412 -12.11624 -11.98349 -11.72386 -11.59351 -11.44261 -11.33309 -11.13668 -11.00156 -10.90852 -10.84392 -10.75006 -10.43264 -10.28287 -9.86445 -9.72423 -9.07394 -8.93807 -8.92341 -8.74629 -8.38662 -7.00132 -5.79466 -3.08817 1.11802 1.16544 2.72233 3.09777 3.41262 3.45883 3.46979 3.53142 4.38408 4.54400 4.55300 4.63905 4.80060 4.90916 4.91861 4.98210 5.06440 5.11414 5.17706 5.26389 5.29415 5.30794 5.36773 5.42178 5.44889 5.49934 5.51496 5.57669 5.64592 5.68518 5.81483 5.83665 5.91619 5.92594 6.01832 6.02213 6.14754 6.25841 6.26727 6.34620 6.37825 6.44599 6.45560 6.48907 6.54972 6.75314 6.80215 6.90845 7.04095 7.58868 7.65700 8.31578 8.38771 9.49841 10.07419 10.42134 11.42997 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.002391 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.932386 B =11705.815555 C =12850.744933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.076 4.076 7 C -0.064 4.064 8 C -0.136 4.136 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.604 5.604 12 C 0.107 3.893 13 C -0.151 4.151 14 C 0.179 3.821 15 H 0.047 0.953 16 N -0.724 5.724 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.135 4.135 26 C 0.147 3.853 27 H 0.069 0.931 28 C -0.135 4.135 29 C -0.117 4.117 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.042 0.958 50 H 0.062 0.938 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 8.108 16.561 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.139 4.139 6 C -0.076 4.076 7 C -0.101 4.101 8 C -0.176 4.176 9 C 0.303 3.697 10 O -0.421 6.421 11 N -0.337 5.337 12 C -0.017 4.017 13 C -0.192 4.192 14 C 0.069 3.931 15 H 0.065 0.935 16 N -0.364 5.364 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.174 4.174 26 C 0.044 3.956 27 H 0.087 0.913 28 C -0.192 4.192 29 C -0.135 4.135 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.837 7.781 16.904 25.777 hybrid contribution 0.291 0.230 -1.245 1.299 sum -17.546 8.011 15.659 24.844 Atomic orbital electron populations 1.20796 0.91294 1.02787 1.02261 1.19915 0.96010 0.93197 0.99560 1.21015 0.94318 0.97426 1.01781 1.21139 0.94294 0.98035 0.99755 1.21097 1.00012 0.91983 1.00832 1.19931 0.93685 0.95092 0.98866 1.20335 1.00772 0.93403 0.95633 1.21721 1.01487 0.95705 0.98672 1.20575 0.79551 0.86203 0.83412 1.90719 1.55112 1.64437 1.31809 1.48252 1.50673 1.28648 1.06136 1.21862 0.97492 0.98548 0.83776 1.22675 0.96109 1.01602 0.98842 1.20158 0.90321 0.93638 0.89018 0.93499 1.42424 1.07110 1.84270 1.02608 1.19181 0.94991 1.40299 0.82688 0.91242 1.24753 0.95620 1.02568 0.97985 1.69651 0.99851 1.54561 1.33985 0.86280 0.76626 0.77821 0.85513 1.21278 1.21708 1.21266 1.22294 0.96876 1.02301 0.95884 1.21290 0.91149 0.86047 0.97163 0.91306 1.22178 1.01430 1.01065 0.94535 1.20947 0.93567 0.97568 1.01442 0.91254 0.91599 0.91506 0.86332 0.86099 0.86003 0.90277 0.90168 0.88794 0.89095 0.90410 0.91496 0.92205 0.90677 0.78265 0.93434 0.90682 0.91859 0.90698 0.93887 0.91935 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.09 -0.74 5.88 -104.62 -0.62 -1.35 16 3 C -0.13 -1.07 9.70 -39.58 -0.38 -1.45 16 4 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 5 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 6 C -0.08 -0.73 5.13 -104.63 -0.54 -1.27 16 7 C -0.06 -0.64 4.64 -27.88 -0.13 -0.77 16 8 C -0.14 -1.39 4.04 -27.88 -0.11 -1.50 16 9 C 0.51 6.86 7.50 -10.98 -0.08 6.78 16 10 O -0.54 -8.47 11.55 5.56 0.06 -8.40 16 11 N -0.60 -8.20 2.97 -165.22 -0.49 -8.69 16 12 C 0.11 1.34 6.35 -3.71 -0.02 1.32 16 13 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 14 C 0.18 3.39 2.73 -67.89 -0.19 3.20 16 15 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 16 N -0.72 -17.67 5.12 -53.39 -0.27 -17.95 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 26 C 0.15 2.12 3.49 -67.60 -0.24 1.89 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 C -0.13 -1.94 7.61 37.16 0.28 -1.66 16 29 C -0.12 -1.06 9.36 -39.58 -0.37 -1.43 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.09 -51.92 -0.42 -0.04 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.08 0.81 8.04 -51.93 -0.42 0.40 16 37 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.09 0.94 7.93 -51.93 -0.41 0.52 16 39 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 40 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.07 1.12 6.54 -51.92 -0.34 0.78 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 51 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -30.96 402.39 -11.13 -42.09 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.85 Total: 8.63 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.34 Total: -11.62 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.04 Total: -53.79 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.06 Total: -8.40 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.96 -11.13 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.807 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds