Wall clock time and date at job start Tue Mar 31 2020 16:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38234 * 120.00122 * 2 1 4 4 C 1.38240 * 120.00374 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00035 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99621 * 359.97438 * 4 3 2 7 7 C 1.38233 * 119.99979 * 359.95908 * 6 4 3 8 8 C 1.50700 * 119.99980 * 179.97438 * 7 6 4 9 9 C 1.50702 * 109.46869 * 90.00014 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46931 * 120.63086 * 0.02562 * 11 9 8 13 13 C 1.53622 * 108.54424 * 126.36867 * 12 11 9 14 14 C 1.53036 * 109.24613 * 54.85288 * 13 12 11 15 15 C 1.52995 * 109.46103 * 178.49326 * 14 13 12 16 16 N 1.46506 * 109.47044 * 295.06845 * 15 14 13 17 17 C 1.36932 * 119.99915 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00259 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00016 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99730 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47224 * 89.99786 * 21 19 17 23 23 H 1.48504 * 109.46817 * 209.99809 * 21 19 17 24 24 H 1.48494 * 109.47163 * 329.99782 * 21 19 17 25 25 C 1.53046 * 109.53689 * 298.51382 * 14 13 12 26 26 C 1.46925 * 120.62933 * 180.27723 * 11 9 8 27 27 C 1.38233 * 120.00375 * 0.27509 * 7 6 4 28 28 H 1.09002 * 109.47610 * 89.99762 * 1 2 3 29 29 H 1.09007 * 109.47302 * 209.99732 * 1 2 3 30 30 H 1.09006 * 109.47092 * 329.99555 * 1 2 3 31 31 H 1.08003 * 119.99992 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.46823 * 270.01692 * 5 4 3 33 33 H 1.08999 * 109.47122 * 30.01683 * 5 4 3 34 34 H 1.09000 * 109.46653 * 150.01999 * 5 4 3 35 35 H 1.08000 * 119.99807 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47210 * 330.00307 * 8 7 6 37 37 H 1.08994 * 109.47551 * 209.99960 * 8 7 6 38 38 H 1.09000 * 109.58052 * 246.19939 * 12 11 9 39 39 H 1.08995 * 109.58699 * 6.62138 * 12 11 9 40 40 H 1.09003 * 109.63253 * 294.86246 * 13 12 11 41 41 H 1.08998 * 109.43170 * 174.72646 * 13 12 11 42 42 H 1.08996 * 109.44694 * 58.52287 * 14 13 12 43 43 H 1.09002 * 109.47470 * 55.06719 * 15 14 13 44 44 H 1.08999 * 109.47237 * 175.06818 * 15 14 13 45 45 H 0.96993 * 119.99996 * 359.97438 * 16 15 14 46 46 H 0.97005 * 119.99992 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.49431 * 301.40868 * 25 14 13 48 48 H 1.08999 * 109.52034 * 181.33388 * 25 14 13 49 49 H 1.08994 * 109.58707 * 353.37218 * 26 11 9 50 50 H 1.09001 * 109.58947 * 113.66077 * 26 11 9 51 51 H 1.07996 * 120.00354 * 179.72262 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5805 -1.1971 0.0009 8 6 4.3339 -2.5022 0.0003 9 6 4.5870 -2.9367 1.4209 10 8 4.1939 -2.2541 2.3431 11 7 5.2450 -4.0870 1.6667 12 6 5.7221 -4.9277 0.5602 13 6 7.2230 -5.1894 0.7575 14 6 7.4521 -5.7897 2.1464 15 6 8.9411 -6.0873 2.3338 16 7 9.3542 -7.1268 1.3877 17 6 10.6530 -7.5601 1.3707 18 1 11.3730 -7.1353 2.0545 19 6 11.0444 -8.5454 0.4746 20 7 12.2930 -8.9615 0.4580 21 14 9.7993 -9.2796 -0.7086 22 1 9.7859 -8.4899 -1.9661 23 1 10.1724 -10.6849 -1.0106 24 1 8.4498 -9.2478 -0.0897 25 6 6.9922 -4.7960 3.2157 26 6 5.4940 -4.5268 3.0463 27 6 2.1981 -1.1972 -0.0035 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6581 2.1325 0.0004 32 1 4.5149 2.8168 -1.0289 33 1 3.7452 3.2620 0.5130 34 1 5.2867 2.3719 0.5121 35 1 5.3517 0.0000 -0.0014 36 1 5.2857 -2.3721 -0.5149 37 1 3.7442 -3.2621 -0.5124 38 1 5.1804 -5.8735 0.5602 39 1 5.5610 -4.4119 -0.3863 40 1 7.7727 -4.2521 0.6711 41 1 7.5723 -5.8879 -0.0029 42 1 6.8823 -6.7141 2.2407 43 1 9.5185 -5.1807 2.1525 44 1 9.1172 -6.4325 3.3526 45 1 8.7075 -7.5086 0.7738 46 1 12.5663 -9.6503 -0.1680 47 1 7.5441 -3.8625 3.1061 48 1 7.1773 -5.2141 4.2051 49 1 5.1824 -3.7464 3.7405 50 1 4.9321 -5.4392 3.2461 51 1 1.6582 -2.1324 -0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206118708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:41 Heat of formation + Delta-G solvation = -18.978325 kcal Electronic energy + Delta-G solvation = -27842.886918 eV Core-core repulsion = 24127.325279 eV Total energy + Delta-G solvation = -3715.561639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56632 -39.53353 -37.77443 -35.10799 -33.85214 -33.74444 -32.86583 -31.32744 -30.68984 -28.79877 -27.43246 -26.92068 -26.65239 -23.72056 -23.36965 -21.93338 -21.06100 -20.96561 -20.21638 -18.93426 -17.72663 -17.13529 -16.56301 -16.21369 -15.93038 -15.25115 -14.76633 -14.58069 -14.39829 -14.31194 -14.11813 -13.94851 -13.58597 -13.48750 -13.33855 -13.15597 -13.14800 -12.95124 -12.80653 -12.59801 -12.43444 -12.36620 -11.96785 -11.92018 -11.69513 -11.41327 -11.31018 -11.20077 -11.16185 -10.94067 -10.58306 -10.46010 -10.26413 -10.12184 -9.88025 -9.60169 -8.91819 -8.79074 -8.72813 -8.69902 -7.24664 -5.78575 -3.13952 1.13934 1.19587 2.52559 2.87714 3.33545 3.35032 3.42162 3.53542 4.35318 4.47039 4.50072 4.55274 4.56276 4.73480 4.86143 4.90376 4.93483 4.99073 5.02311 5.08400 5.09672 5.22741 5.25624 5.28314 5.28716 5.35193 5.36546 5.39220 5.45842 5.54469 5.57474 5.60876 5.69911 5.70819 5.82241 5.88913 5.91927 5.97692 6.05124 6.10521 6.27103 6.32361 6.33311 6.33817 6.43491 6.48236 6.67572 6.78231 6.83328 7.29488 7.98096 8.07594 8.40479 9.19641 9.91798 10.11879 11.39976 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.002177 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.565352 B =12861.453495 C =12929.847703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.103 4.103 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.610 5.610 12 C 0.103 3.897 13 C -0.127 4.127 14 C -0.098 4.098 15 C 0.162 3.838 16 N -0.755 5.755 17 C -0.243 4.243 18 H 0.089 0.911 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.125 4.125 26 C 0.113 3.887 27 C -0.111 4.111 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.550 18.887 -2.199 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.171 4.171 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.143 4.143 9 C 0.305 3.695 10 O -0.414 6.414 11 N -0.344 5.344 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.117 4.117 15 C 0.035 3.965 16 N -0.401 5.401 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.583 5.583 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.164 4.164 26 C -0.009 4.009 27 C -0.129 4.129 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.512 19.229 -1.637 30.418 hybrid contribution -0.576 -0.868 -0.932 1.397 sum -24.088 18.361 -2.568 30.396 Atomic orbital electron populations 1.20776 0.91265 1.02766 1.02160 1.19824 0.95925 0.93029 0.99581 1.20864 0.93499 0.97411 1.02326 1.19843 0.93803 0.95192 0.99394 1.20784 1.00013 0.94027 1.02226 1.20836 0.99555 0.91433 1.00971 1.19239 0.93473 0.93526 0.99361 1.20726 1.02249 0.96145 0.95186 1.20474 0.77567 0.80271 0.91172 1.90707 1.50953 1.53475 1.46232 1.48171 1.56386 1.22156 1.07715 1.21978 0.95809 0.95003 0.89145 1.22024 0.94074 1.02083 0.98369 1.21357 0.98230 0.98018 0.94070 1.20650 0.90645 0.91817 0.93377 1.42723 1.09111 1.45494 1.42781 1.19069 0.85293 1.16390 1.16553 0.89288 1.24690 0.95975 0.99179 0.99486 1.69704 1.15418 1.33139 1.39992 0.86545 0.81288 0.78900 0.81787 1.21057 1.21741 1.20365 1.21888 0.94857 1.00013 0.99604 1.21603 0.96280 1.00307 0.82748 1.20800 0.93309 0.97535 1.01294 0.91263 0.91577 0.91621 0.86332 0.91210 0.91619 0.91465 0.86291 0.87788 0.87996 0.91107 0.89828 0.91255 0.90061 0.91041 0.95541 0.95518 0.80721 0.93073 0.91418 0.90476 0.89198 0.91622 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.08 -0.80 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.16 9.36 -39.58 -0.37 -1.54 16 4 C -0.08 -0.81 5.88 -104.62 -0.62 -1.43 16 5 C -0.11 -0.84 10.01 36.00 0.36 -0.48 16 6 C -0.11 -1.18 9.36 -39.58 -0.37 -1.55 16 7 C -0.06 -0.60 4.37 -104.63 -0.46 -1.06 16 8 C -0.10 -0.97 4.18 -29.03 -0.12 -1.09 16 9 C 0.52 6.40 7.69 -10.98 -0.08 6.31 16 10 O -0.54 -8.61 15.45 5.55 0.09 -8.52 16 11 N -0.61 -6.96 2.97 -172.53 -0.51 -7.47 16 12 C 0.10 1.04 6.37 -3.48 -0.02 1.01 16 13 C -0.13 -1.62 5.26 -26.39 -0.14 -1.76 16 14 C -0.10 -1.37 2.19 -90.58 -0.20 -1.57 16 15 C 0.16 3.01 5.65 -4.04 -0.02 2.99 16 16 N -0.76 -17.39 5.12 -59.91 -0.31 -17.70 16 17 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 20 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 21 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 25 C -0.12 -1.51 5.36 -26.63 -0.14 -1.65 16 26 C 0.11 1.30 6.43 -3.73 -0.02 1.28 16 27 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 8.09 -51.92 -0.42 0.01 16 30 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.07 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.10 0.82 7.65 -51.93 -0.40 0.42 16 37 H 0.10 0.74 7.87 -51.93 -0.41 0.33 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.65 5.94 -51.93 -0.31 0.35 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.14 7.15 -51.93 -0.37 0.77 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 7.96 4.71 -40.82 -0.19 7.77 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -34.20 403.91 -10.48 -44.68 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.81 Total: 5.37 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.09 Total: -10.89 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.04 Total: -53.62 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.20 -10.48 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206118708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.704 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds