Wall clock time and date at job start Tue Mar 31 2020 15:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.99971 * 2 1 4 4 C 1.38210 * 119.99618 * 180.29252 * 3 2 1 5 5 C 1.38257 * 120.00501 * 359.70987 * 4 3 2 6 6 C 1.38211 * 119.99686 * 0.02562 * 5 4 3 7 7 C 1.38215 * 120.00226 * 179.74572 * 2 1 3 8 8 C 1.50702 * 119.99960 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.47139 * 1.31239 * 8 7 2 10 10 C 1.52999 * 109.47132 * 241.31984 * 8 7 2 11 11 C 1.52997 * 109.47429 * 121.31769 * 8 7 2 12 12 C 1.50698 * 109.47176 * 186.56972 * 11 8 7 13 13 O 1.21280 * 120.00202 * 5.04445 * 12 11 8 14 14 N 1.34774 * 120.00081 * 185.04562 * 12 11 8 15 15 C 1.46501 * 119.99808 * 354.42022 * 14 12 11 16 16 C 1.46497 * 120.00137 * 174.41728 * 14 12 11 17 17 C 1.52997 * 109.47373 * 275.15565 * 16 14 12 18 18 H 1.08998 * 112.74092 * 42.82077 * 17 16 14 19 19 C 1.53500 * 113.51995 * 272.02765 * 17 16 14 20 20 C 1.53750 * 83.25915 * 218.97449 * 19 17 16 21 21 N 1.47072 * 87.89210 * 26.23887 * 20 19 17 22 22 C 1.36927 * 136.06377 * 152.96414 * 21 20 19 23 23 H 1.07999 * 120.00734 * 175.16233 * 22 21 20 24 24 C 1.38817 * 119.99799 * 355.42689 * 22 21 20 25 25 N 1.31621 * 119.99947 * 359.73392 * 24 22 21 26 26 Si 1.86802 * 119.99926 * 179.72283 * 24 22 21 27 27 H 1.48502 * 109.46870 * 60.00689 * 26 24 22 28 28 H 1.48502 * 109.47022 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47429 * 300.00764 * 26 24 22 30 30 H 1.08993 * 109.47303 * 264.08897 * 1 2 3 31 31 H 1.08997 * 109.46699 * 24.09496 * 1 2 3 32 32 H 1.09004 * 109.46828 * 144.09205 * 1 2 3 33 33 H 1.07999 * 120.00070 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.99509 * 179.72255 * 4 3 2 35 35 H 1.07994 * 120.00380 * 179.97438 * 5 4 3 36 36 H 1.07999 * 119.99930 * 179.97438 * 6 5 4 37 37 H 1.09000 * 109.47419 * 64.13462 * 10 8 7 38 38 H 1.08995 * 109.47290 * 184.13856 * 10 8 7 39 39 H 1.09003 * 109.46995 * 304.13478 * 10 8 7 40 40 H 1.08998 * 109.47368 * 66.56472 * 11 8 7 41 41 H 1.09010 * 109.46779 * 306.56585 * 11 8 7 42 42 H 1.09001 * 109.47181 * 269.99764 * 15 14 12 43 43 H 1.08999 * 109.47299 * 29.99864 * 15 14 12 44 44 H 1.09003 * 109.47055 * 150.00001 * 15 14 12 45 45 H 1.09006 * 109.47447 * 155.15051 * 16 14 12 46 46 H 1.09003 * 109.46923 * 35.15603 * 16 14 12 47 47 H 1.09007 * 114.20500 * 332.72911 * 19 17 16 48 48 H 1.09000 * 114.20763 * 105.35420 * 19 17 16 49 49 H 1.09000 * 113.46744 * 271.50734 * 20 19 17 50 50 H 1.09005 * 113.55472 * 140.98491 * 20 19 17 51 51 H 0.97002 * 120.00103 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0061 5 6 4.2717 0.0000 -0.0062 6 6 3.5807 -1.1969 -0.0006 7 6 2.1982 -1.1969 0.0053 8 6 1.4447 -2.5021 0.0105 9 1 0.3732 -2.3032 -0.0143 10 6 1.7888 -3.2845 1.2795 11 6 1.8395 -3.3239 -1.2181 12 6 0.9716 -4.5531 -1.3004 13 8 0.0616 -4.7067 -0.5134 14 7 1.2065 -5.4817 -2.2485 15 6 2.2247 -5.2403 -3.2738 16 6 0.4438 -6.7325 -2.2537 17 6 1.1055 -7.7373 -1.3085 18 1 1.4236 -7.2855 -0.3689 19 6 2.1959 -8.5836 -1.9800 20 6 1.6029 -9.7073 -1.1142 21 7 0.3285 -8.9733 -1.1305 22 6 -0.9974 -9.2973 -1.0218 23 1 -1.7435 -8.5170 -0.9924 24 6 -1.3824 -10.6287 -0.9439 25 7 -0.4733 -11.5798 -0.9797 26 14 -3.1907 -11.0705 -0.7878 27 1 -3.9305 -10.5516 -1.9662 28 1 -3.3357 -12.5470 -0.7225 29 1 -3.7434 -10.4641 0.4499 30 1 -0.3633 -0.1058 1.0221 31 1 -0.3632 0.9381 -0.4195 32 1 -0.3633 -0.8324 -0.6027 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1326 -0.0106 35 1 5.3517 -0.0001 -0.0114 36 1 4.1207 -2.1322 -0.0011 37 1 1.4411 -2.7322 2.1525 38 1 1.3018 -4.2592 1.2486 39 1 2.8686 -3.4197 1.3414 40 1 2.8846 -3.6219 -1.1355 41 1 1.7032 -2.7221 -2.1168 42 1 1.7675 -4.7451 -4.1304 43 1 3.0100 -4.6054 -2.8637 44 1 2.6542 -6.1909 -3.5902 45 1 0.4244 -7.1420 -3.2637 46 1 -0.5758 -6.5377 -1.9210 47 1 2.0579 -8.7211 -3.0525 48 1 3.2127 -8.2988 -1.7095 49 1 2.0521 -9.7748 -0.1233 50 1 1.5557 -10.6702 -1.6227 51 1 -0.7423 -12.5102 -0.9248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691666183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:34 Heat of formation + Delta-G solvation = 39.688309 kcal Electronic energy + Delta-G solvation = -28533.378792 eV Core-core repulsion = 24820.361130 eV Total energy + Delta-G solvation = -3713.017663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35730 -39.45306 -37.96953 -35.45433 -34.89772 -32.93324 -32.13991 -30.27371 -29.00943 -27.87199 -27.48248 -27.03081 -25.89648 -23.88724 -23.39923 -22.30666 -21.55101 -20.12468 -19.21794 -18.70496 -17.27014 -16.72695 -16.27867 -16.12631 -15.59132 -15.46813 -15.00000 -14.65810 -14.23792 -14.12202 -13.92514 -13.71378 -13.42888 -13.29263 -13.04194 -12.84032 -12.71377 -12.57966 -12.52375 -12.36993 -12.19022 -11.81597 -11.77893 -11.49548 -11.45166 -11.23396 -11.05862 -10.86823 -10.75762 -10.71489 -10.55436 -10.40968 -9.81514 -9.75599 -9.59882 -9.35888 -8.97915 -8.74453 -8.73054 -8.21809 -6.81811 -5.70247 -3.03485 1.15642 1.18964 2.86098 3.22541 3.44344 3.48165 3.49820 3.56170 4.42670 4.52073 4.55614 4.72191 4.75436 4.90561 4.92201 4.97607 5.10658 5.15804 5.24995 5.29426 5.35364 5.39712 5.44120 5.50224 5.52655 5.55555 5.58201 5.63092 5.67926 5.72822 5.83033 5.85965 5.97667 6.00593 6.03681 6.10373 6.21376 6.29413 6.31773 6.34452 6.39692 6.50284 6.55333 6.59584 6.73295 6.82741 6.91797 7.28469 7.47795 7.63705 7.64706 8.05500 8.44259 9.10420 9.76823 10.70619 11.46434 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.002499 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.334736 B =11200.156847 C =11850.932732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.043 4.043 9 H 0.094 0.906 10 C -0.145 4.145 11 C -0.131 4.131 12 C 0.509 3.491 13 O -0.531 6.531 14 N -0.613 5.613 15 C 0.078 3.922 16 C 0.116 3.884 17 C 0.136 3.864 18 H 0.042 0.958 19 C -0.167 4.167 20 C 0.149 3.851 21 N -0.600 5.600 22 C -0.213 4.213 23 H 0.079 0.921 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.285 1.285 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.020 0.980 50 H 0.076 0.924 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.068 24.275 -2.614 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.081 4.081 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.062 4.062 9 H 0.112 0.888 10 C -0.202 4.202 11 C -0.171 4.171 12 C 0.296 3.704 13 O -0.408 6.408 14 N -0.347 5.347 15 C -0.066 4.066 16 C -0.007 4.007 17 C 0.028 3.972 18 H 0.059 0.941 19 C -0.205 4.205 20 C 0.023 3.977 21 N -0.326 5.326 22 C -0.341 4.341 23 H 0.097 0.903 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.742 3.258 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.038 0.962 50 H 0.094 0.906 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.265 23.925 -2.173 26.125 hybrid contribution -0.708 -0.252 0.181 0.773 sum 9.558 23.673 -1.991 25.607 Atomic orbital electron populations 1.20881 0.91268 1.02789 1.02743 1.19821 0.96090 0.92573 0.99619 1.21016 0.94279 0.97322 1.01243 1.21095 0.94297 0.97977 1.00838 1.21105 0.99739 0.92544 1.00962 1.21013 0.93661 0.98112 1.00122 1.19788 0.93632 0.94301 0.99538 1.20007 1.00724 0.90745 0.94680 0.88798 1.21893 1.01004 1.01373 0.95970 1.21770 1.00361 0.94993 0.99943 1.20566 0.84956 0.84228 0.80624 1.90714 1.31468 1.77886 1.40718 1.47927 1.39045 1.18606 1.29094 1.21797 0.91155 1.02516 0.91083 1.21859 0.96232 0.81999 1.00595 1.22401 0.90797 0.89004 0.95031 0.94080 1.23775 0.96388 1.00493 0.99865 1.22129 0.84211 0.96284 0.95067 1.45665 1.00877 1.01369 1.84670 1.18887 0.80331 0.91549 1.43324 0.90300 1.24776 0.97672 0.95410 1.02617 1.69818 1.31415 0.99046 1.56568 0.86205 0.84462 0.77098 0.78061 1.21053 1.21602 1.21188 0.90988 0.91729 0.90797 0.86288 0.86375 0.86273 0.86060 0.92799 0.90482 0.93138 0.89061 0.89167 0.92922 0.91391 0.90656 0.90458 0.90171 0.90587 0.92987 0.96217 0.90555 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.21 36.01 0.33 -0.70 16 2 C -0.08 -0.79 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.05 9.68 -39.58 -0.38 -1.43 16 4 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 5 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 6 C -0.11 -1.02 8.72 -39.59 -0.35 -1.36 16 7 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 8 C -0.04 -0.48 2.00 -91.77 -0.18 -0.67 16 9 H 0.09 1.17 5.27 -51.93 -0.27 0.89 16 10 C -0.15 -1.78 8.88 37.16 0.33 -1.45 16 11 C -0.13 -1.41 3.41 -27.89 -0.10 -1.50 16 12 C 0.51 7.66 7.22 -10.99 -0.08 7.58 16 13 O -0.53 -10.25 13.92 5.56 0.08 -10.18 16 14 N -0.61 -8.89 2.88 -181.57 -0.52 -9.41 16 15 C 0.08 0.77 10.31 59.85 0.62 1.39 16 16 C 0.12 2.14 5.36 -4.04 -0.02 2.12 16 17 C 0.14 2.86 4.27 -72.39 -0.31 2.55 16 18 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.17 -3.14 8.03 -26.08 -0.21 -3.35 16 20 C 0.15 3.59 7.52 -8.37 -0.06 3.52 16 21 N -0.60 -15.78 3.64 -176.81 -0.64 -16.43 16 22 C -0.21 -6.15 10.55 -15.06 -0.16 -6.31 16 23 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 25 N -0.92 -27.86 11.43 55.49 0.63 -27.23 16 26 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.97 7.17 -52.49 -0.38 0.60 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.17 6.21 -51.93 -0.32 0.85 16 39 H 0.05 0.55 7.35 -51.93 -0.38 0.16 16 40 H 0.09 0.83 6.74 -51.93 -0.35 0.48 16 41 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.52 6.31 -51.93 -0.33 0.19 16 44 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 45 H 0.08 1.36 7.75 -51.93 -0.40 0.95 16 46 H 0.08 1.72 7.51 -51.93 -0.39 1.33 16 47 H 0.08 1.37 7.93 -51.92 -0.41 0.96 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 2.02 6.93 -51.93 -0.36 1.66 16 51 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -33.88 403.17 -10.52 -44.40 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.54 Total: 0.43 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.58 Total: -5.43 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.53 Total: -53.06 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.88 -10.52 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.091 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds