Wall clock time and date at job start Tue Mar 31 2020 15:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53338 * 1 3 3 C 1.54507 * 107.19961 * 2 1 4 4 C 1.52665 * 109.52095 * 116.36330 * 2 1 3 5 5 C 1.52841 * 110.39073 * 75.31617 * 4 2 1 6 6 N 1.46835 * 109.23004 * 179.08119 * 5 4 2 7 7 C 1.34774 * 120.00299 * 154.99990 * 6 5 4 8 8 O 1.21551 * 119.99574 * 359.97438 * 7 6 5 9 9 C 1.47877 * 120.00185 * 179.72579 * 7 6 5 10 10 C 1.39925 * 120.02479 * 359.97438 * 9 7 6 11 11 C 1.38328 * 120.35598 * 179.76762 * 10 9 7 12 12 C 1.37747 * 120.41343 * 0.51140 * 11 10 9 13 13 C 1.40745 * 120.04346 * 359.74236 * 12 11 10 14 14 C 1.41431 * 120.18199 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00038 * 24.44416 * 14 13 12 16 16 C 1.39942 * 120.00575 * 204.44058 * 14 13 12 17 17 N 1.30825 * 119.99398 * 17.88145 * 16 14 13 18 18 Si 1.86797 * 120.00135 * 197.88546 * 16 14 13 19 19 H 1.48494 * 109.47442 * 59.99949 * 18 16 14 20 20 H 1.48507 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46885 * 299.99426 * 18 16 14 22 22 C 1.38991 * 120.02858 * 180.27391 * 9 7 6 23 23 C 1.52843 * 108.53080 * 60.08364 * 5 4 2 24 24 C 1.52676 * 110.34931 * 299.82061 * 23 5 4 25 25 C 1.53334 * 109.52779 * 284.87810 * 24 23 5 26 26 C 1.54493 * 107.52225 * 168.69842 * 24 23 5 27 27 N 1.44796 * 112.95816 * 49.39459 * 24 23 5 28 28 H 1.09002 * 109.46816 * 303.63605 * 1 2 3 29 29 H 1.09001 * 109.47145 * 63.63522 * 1 2 3 30 30 H 1.09000 * 109.46849 * 183.63863 * 1 2 3 31 31 H 1.09000 * 109.46660 * 177.67988 * 3 2 1 32 32 H 1.09000 * 109.47143 * 297.67549 * 3 2 1 33 33 H 1.08996 * 109.46922 * 57.67478 * 3 2 1 34 34 H 1.09242 * 109.42775 * 314.89889 * 4 2 1 35 35 H 1.09234 * 109.44231 * 195.75530 * 4 2 1 36 36 H 1.08700 * 110.43871 * 298.87640 * 5 4 2 37 37 H 0.97000 * 119.99583 * 335.00197 * 6 5 4 38 38 H 1.08004 * 119.82035 * 359.97438 * 10 9 7 39 39 H 1.08001 * 119.79259 * 180.25555 * 11 10 9 40 40 H 1.08012 * 119.97950 * 179.76680 * 12 11 10 41 41 H 0.97004 * 119.99975 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.20091 * 359.95312 * 22 9 7 43 43 H 1.09229 * 109.37799 * 60.27510 * 23 5 4 44 44 H 1.09236 * 109.37973 * 179.37198 * 23 5 4 45 45 H 1.09000 * 109.46511 * 185.53894 * 25 24 23 46 46 H 1.08993 * 109.47270 * 305.53976 * 25 24 23 47 47 H 1.09001 * 109.46483 * 65.54688 * 25 24 23 48 48 H 1.09001 * 109.47364 * 297.69968 * 26 24 23 49 49 H 1.09006 * 109.47437 * 57.69589 * 26 24 23 50 50 H 1.08997 * 109.47391 * 177.69733 * 26 24 23 51 51 H 1.00900 * 112.57771 * 183.03138 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9903 1.4760 0.0000 4 6 2.0435 -0.6390 1.2892 5 6 1.8792 -2.1574 1.2323 6 7 2.3970 -2.7468 2.4735 7 6 1.9376 -3.9416 2.8951 8 8 1.0942 -4.5311 2.2481 9 6 2.4636 -4.5380 4.1419 10 6 3.4386 -3.8625 4.8841 11 6 3.9319 -4.4118 6.0538 12 6 3.4770 -5.6344 6.4962 13 6 2.5003 -6.3312 5.7603 14 6 2.0308 -7.5864 6.2120 15 1 2.0920 -7.8406 7.2599 16 6 1.4867 -8.4991 5.3014 17 7 1.7195 -8.3633 4.0212 18 14 0.4281 -9.9111 5.9137 19 1 -0.7552 -9.3689 6.6284 20 1 -0.0234 -10.7283 4.7588 21 1 1.2209 -10.7584 6.8404 22 6 1.9943 -5.7728 4.5742 23 6 2.6856 -2.6892 0.0478 24 6 2.1809 -2.0762 -1.2562 25 6 0.8509 -2.7304 -1.6490 26 6 3.2046 -2.4230 -2.3601 27 7 2.0562 -0.6350 -1.1916 28 1 -0.3633 0.5693 0.8556 29 1 -0.3633 0.4564 -0.9208 30 1 -0.3633 -1.0256 0.0652 31 1 3.0786 1.5193 0.0416 32 1 1.6417 1.9642 -0.9101 33 1 1.5728 1.9855 0.8684 34 1 1.4795 -0.2451 2.1379 35 1 3.0994 -0.3934 1.4237 36 1 0.8302 -2.4220 1.1269 37 1 3.0698 -2.2762 2.9900 38 1 3.8057 -2.9055 4.5435 39 1 4.6815 -3.8806 6.6217 40 1 3.8698 -6.0585 7.4086 41 1 1.3421 -8.9957 3.3898 42 1 1.2447 -6.2996 4.0024 43 1 3.7395 -2.4367 0.1844 44 1 2.5868 -3.7761 0.0008 45 1 0.5409 -2.3638 -2.6276 46 1 0.9761 -3.8123 -1.6892 47 1 0.0904 -2.4797 -0.9095 48 1 4.1676 -1.9742 -2.1166 49 1 3.3147 -3.5054 -2.4265 50 1 2.8539 -2.0342 -3.3160 51 1 1.6763 -0.2407 -2.0392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042196611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:39 Heat of formation + Delta-G solvation = -36.630713 kcal Electronic energy + Delta-G solvation = -29077.641610 eV Core-core repulsion = 25361.314507 eV Total energy + Delta-G solvation = -3716.327104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.29161 -38.78901 -36.97292 -35.16186 -34.58070 -33.72029 -31.06758 -29.58027 -29.35579 -28.67821 -27.74237 -26.75147 -26.31173 -25.31501 -23.30370 -21.36281 -20.83839 -20.68045 -19.57624 -18.34547 -17.60667 -16.45897 -15.90450 -15.61636 -15.43139 -15.02928 -14.63809 -14.50523 -14.10971 -13.95369 -13.59997 -13.53687 -13.36393 -13.15564 -13.04162 -12.72875 -12.60435 -12.47440 -12.30148 -12.21063 -11.77805 -11.75532 -11.64201 -11.60037 -11.28554 -11.16068 -11.08642 -10.98090 -10.76294 -10.71977 -10.58583 -10.50218 -10.40446 -10.01189 -9.68991 -9.20546 -8.96761 -8.60302 -8.22581 -7.62353 -7.51555 -6.79892 -4.41139 2.22565 2.82633 3.07360 3.09052 3.16891 3.63574 3.82682 3.87922 3.92362 4.57724 4.62928 4.72976 4.77698 4.88339 4.93526 5.13296 5.27116 5.34778 5.38833 5.45327 5.56088 5.60519 5.61206 5.64920 5.67992 5.73307 5.74897 5.82453 5.85362 5.95086 5.97917 6.04504 6.06318 6.09396 6.17908 6.22421 6.27770 6.28950 6.41787 6.72763 6.91611 6.99484 7.03389 7.21802 7.38827 7.44297 7.47272 7.71025 7.77182 7.93458 8.11958 8.20577 8.51000 8.80502 8.84042 8.98499 10.14692 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002944 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.965548 B = 9507.352891 C =10348.761999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.153 3.847 3 C -0.140 4.140 4 C -0.117 4.117 5 C 0.149 3.851 6 N -0.734 5.734 7 C 0.565 3.435 8 O -0.546 6.546 9 C -0.128 4.128 10 C -0.218 4.218 11 C -0.098 4.098 12 C -0.213 4.213 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.265 1.265 22 C -0.092 4.092 23 C -0.119 4.119 24 C 0.151 3.849 25 C -0.181 4.181 26 C -0.140 4.140 27 N -0.719 5.719 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.050 0.950 51 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 15.084 -10.253 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.061 3.939 3 C -0.198 4.198 4 C -0.156 4.156 5 C 0.044 3.956 6 N -0.387 5.387 7 C 0.355 3.645 8 O -0.425 6.425 9 C -0.132 4.132 10 C -0.238 4.238 11 C -0.116 4.116 12 C -0.233 4.233 13 C 0.096 3.904 14 C -0.490 4.490 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.190 1.190 22 C -0.112 4.112 23 C -0.158 4.158 24 C 0.060 3.940 25 C -0.240 4.240 26 C -0.198 4.198 27 N -0.355 5.355 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.208 14.512 -10.677 18.018 hybrid contribution -0.870 -0.573 0.205 1.062 sum -0.663 13.939 -10.472 17.447 Atomic orbital electron populations 1.22806 0.97297 1.02326 1.01839 1.20179 0.91520 0.93461 0.88691 1.22254 1.01795 0.94526 1.01274 1.21893 1.02382 0.94404 0.96888 1.20745 0.98986 0.91726 0.84151 1.46133 1.45063 1.21983 1.25507 1.18845 0.80594 0.79768 0.85247 1.90686 1.32862 1.61260 1.57649 1.19491 1.01189 0.97451 0.95025 1.20340 1.04203 1.00344 0.98906 1.20430 0.99230 0.95932 0.96018 1.21096 1.01803 0.97519 1.02840 1.17593 0.89251 0.92530 0.91003 1.19556 1.35132 0.98702 0.95564 0.90133 1.25961 0.94816 0.99348 0.94442 1.69786 1.33868 1.34233 1.02803 0.86330 0.80768 0.80179 0.79279 1.18734 1.20224 1.18965 1.21635 0.99848 0.92077 0.97687 1.22021 1.00037 1.01035 0.92747 1.20230 0.93950 0.84681 0.95156 1.22756 0.98551 1.01865 1.00818 1.22244 0.99091 1.01032 0.97477 1.54624 1.68553 1.07888 1.04428 0.92151 0.92789 0.92248 0.92076 0.92896 0.92444 0.90844 0.90865 0.89636 0.76725 0.89265 0.88941 0.88657 0.90408 0.84875 0.91354 0.90665 0.93068 0.91876 0.92415 0.92153 0.92321 0.93062 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.23 37.33 0.31 -1.42 16 2 C 0.15 1.44 0.93 -131.94 -0.12 1.32 16 3 C -0.14 -1.11 8.52 37.95 0.32 -0.79 16 4 C -0.12 -1.29 4.13 -26.98 -0.11 -1.40 16 5 C 0.15 2.12 2.33 -67.91 -0.16 1.96 16 6 N -0.73 -12.17 5.02 -54.79 -0.28 -12.44 16 7 C 0.56 12.32 7.75 -12.32 -0.10 12.22 16 8 O -0.55 -13.61 15.98 5.32 0.09 -13.52 16 9 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 10 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 11 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 12 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 13 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 14 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 15 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.78 -20.79 10.96 55.55 0.61 -20.18 16 18 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.09 -2.47 8.24 -38.44 -0.32 -2.79 16 23 C -0.12 -1.63 4.25 -26.98 -0.11 -1.74 16 24 C 0.15 1.65 0.92 -131.94 -0.12 1.53 16 25 C -0.18 -2.06 8.29 37.33 0.31 -1.75 16 26 C -0.14 -1.39 8.52 37.94 0.32 -1.07 16 27 N -0.72 -6.78 4.80 -87.43 -0.42 -7.20 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.66 5.03 -51.93 -0.26 0.40 16 31 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.79 8.07 -51.79 -0.42 0.37 16 35 H 0.07 0.77 8.05 -51.80 -0.42 0.36 16 36 H 0.09 1.41 5.73 -52.10 -0.30 1.11 16 37 H 0.40 5.78 6.61 -40.82 -0.27 5.51 16 38 H 0.09 1.55 6.38 -52.48 -0.33 1.22 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 41 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 42 H 0.13 3.86 5.74 -52.49 -0.30 3.56 16 43 H 0.07 0.92 8.07 -51.80 -0.42 0.50 16 44 H 0.07 1.23 8.02 -51.80 -0.42 0.81 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 47 H 0.06 0.72 5.09 -51.93 -0.26 0.45 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.36 2.92 8.82 -39.29 -0.35 2.58 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -28.86 393.97 -10.02 -38.89 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -8.36 Total: 13.86 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.57 Total: -19.15 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.09 Total: -39.82 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.52 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.86 -10.02 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042196611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.255 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds