Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53338 * 1 3 3 C 1.54507 * 107.19961 * 2 1 4 4 C 1.52665 * 109.52095 * 116.36330 * 2 1 3 5 5 C 1.52841 * 110.39073 * 75.31617 * 4 2 1 6 6 N 1.46835 * 109.23004 * 179.08119 * 5 4 2 7 7 C 1.34774 * 120.00299 * 154.99990 * 6 5 4 8 8 O 1.21551 * 119.99574 * 359.97438 * 7 6 5 9 9 C 1.47877 * 120.00185 * 179.72579 * 7 6 5 10 10 C 1.39925 * 120.02479 * 359.97438 * 9 7 6 11 11 C 1.38328 * 120.35598 * 179.76762 * 10 9 7 12 12 C 1.37747 * 120.41343 * 0.51140 * 11 10 9 13 13 C 1.40745 * 120.04346 * 359.74236 * 12 11 10 14 14 C 1.41431 * 120.18199 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00038 * 24.44416 * 14 13 12 16 16 C 1.39942 * 120.00575 * 204.44058 * 14 13 12 17 17 N 1.30825 * 119.99398 * 17.88145 * 16 14 13 18 18 Si 1.86797 * 120.00135 * 197.88546 * 16 14 13 19 19 H 1.48494 * 109.47442 * 59.99949 * 18 16 14 20 20 H 1.48507 * 109.46991 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46885 * 299.99426 * 18 16 14 22 22 C 1.38991 * 120.02858 * 180.27391 * 9 7 6 23 23 C 1.52843 * 108.53080 * 60.08364 * 5 4 2 24 24 C 1.52676 * 110.34931 * 299.82061 * 23 5 4 25 25 C 1.53334 * 109.52779 * 284.87810 * 24 23 5 26 26 C 1.54493 * 107.52225 * 168.69842 * 24 23 5 27 27 N 1.44796 * 112.95816 * 49.39459 * 24 23 5 28 28 H 1.09002 * 109.46816 * 303.63605 * 1 2 3 29 29 H 1.09001 * 109.47145 * 63.63522 * 1 2 3 30 30 H 1.09000 * 109.46849 * 183.63863 * 1 2 3 31 31 H 1.09000 * 109.46660 * 177.67988 * 3 2 1 32 32 H 1.09000 * 109.47143 * 297.67549 * 3 2 1 33 33 H 1.08996 * 109.46922 * 57.67478 * 3 2 1 34 34 H 1.09242 * 109.42775 * 314.89889 * 4 2 1 35 35 H 1.09234 * 109.44231 * 195.75530 * 4 2 1 36 36 H 1.08700 * 110.43871 * 298.87640 * 5 4 2 37 37 H 0.97000 * 119.99583 * 335.00197 * 6 5 4 38 38 H 1.08004 * 119.82035 * 359.97438 * 10 9 7 39 39 H 1.08001 * 119.79259 * 180.25555 * 11 10 9 40 40 H 1.08012 * 119.97950 * 179.76680 * 12 11 10 41 41 H 0.97004 * 119.99975 * 180.02562 * 17 16 14 42 42 H 1.08002 * 120.20091 * 359.95312 * 22 9 7 43 43 H 1.09229 * 109.37799 * 60.27510 * 23 5 4 44 44 H 1.09236 * 109.37973 * 179.37198 * 23 5 4 45 45 H 1.09000 * 109.46511 * 185.53894 * 25 24 23 46 46 H 1.08993 * 109.47270 * 305.53976 * 25 24 23 47 47 H 1.09001 * 109.46483 * 65.54688 * 25 24 23 48 48 H 1.09001 * 109.47364 * 297.69968 * 26 24 23 49 49 H 1.09006 * 109.47437 * 57.69589 * 26 24 23 50 50 H 1.08997 * 109.47391 * 177.69733 * 26 24 23 51 51 H 1.00900 * 112.57771 * 183.03138 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9903 1.4760 0.0000 4 6 2.0435 -0.6390 1.2892 5 6 1.8792 -2.1574 1.2323 6 7 2.3970 -2.7468 2.4735 7 6 1.9376 -3.9416 2.8951 8 8 1.0942 -4.5311 2.2481 9 6 2.4636 -4.5380 4.1419 10 6 3.4386 -3.8625 4.8841 11 6 3.9319 -4.4118 6.0538 12 6 3.4770 -5.6344 6.4962 13 6 2.5003 -6.3312 5.7603 14 6 2.0308 -7.5864 6.2120 15 1 2.0920 -7.8406 7.2599 16 6 1.4867 -8.4991 5.3014 17 7 1.7195 -8.3633 4.0212 18 14 0.4281 -9.9111 5.9137 19 1 -0.7552 -9.3689 6.6284 20 1 -0.0234 -10.7283 4.7588 21 1 1.2209 -10.7584 6.8404 22 6 1.9943 -5.7728 4.5742 23 6 2.6856 -2.6892 0.0478 24 6 2.1809 -2.0762 -1.2562 25 6 0.8509 -2.7304 -1.6490 26 6 3.2046 -2.4230 -2.3601 27 7 2.0562 -0.6350 -1.1916 28 1 -0.3633 0.5693 0.8556 29 1 -0.3633 0.4564 -0.9208 30 1 -0.3633 -1.0256 0.0652 31 1 3.0786 1.5193 0.0416 32 1 1.6417 1.9642 -0.9101 33 1 1.5728 1.9855 0.8684 34 1 1.4795 -0.2451 2.1379 35 1 3.0994 -0.3934 1.4237 36 1 0.8302 -2.4220 1.1269 37 1 3.0698 -2.2762 2.9900 38 1 3.8057 -2.9055 4.5435 39 1 4.6815 -3.8806 6.6217 40 1 3.8698 -6.0585 7.4086 41 1 1.3421 -8.9957 3.3898 42 1 1.2447 -6.2996 4.0024 43 1 3.7395 -2.4367 0.1844 44 1 2.5868 -3.7761 0.0008 45 1 0.5409 -2.3638 -2.6276 46 1 0.9761 -3.8123 -1.6892 47 1 0.0904 -2.4797 -0.9095 48 1 4.1676 -1.9742 -2.1166 49 1 3.3147 -3.5054 -2.4265 50 1 2.8539 -2.0342 -3.3160 51 1 1.6763 -0.2407 -2.0392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042196611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -53.677674 kcal Electronic energy + Delta-G solvation = -29078.380822 eV Core-core repulsion = 25361.314507 eV Total energy + Delta-G solvation = -3717.066316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47947 -40.28009 -38.76257 -36.07912 -35.96003 -35.56506 -32.64924 -31.33744 -30.94992 -29.55109 -28.52148 -27.53432 -27.28697 -27.21572 -24.86208 -22.94238 -22.48636 -21.58721 -21.15831 -19.72715 -19.03746 -17.99533 -17.23338 -17.04388 -16.70358 -16.45371 -16.26034 -15.73083 -15.48166 -15.27480 -14.95760 -14.78875 -14.66134 -14.36719 -14.26063 -14.22148 -13.87104 -13.59138 -13.46978 -13.11742 -13.00902 -12.96894 -12.82241 -12.62697 -12.54910 -12.50054 -12.41424 -12.25957 -12.21667 -11.98554 -11.80769 -11.71779 -11.61947 -11.52212 -11.35782 -11.07707 -10.71029 -10.08940 -9.48054 -9.39351 -9.02484 -8.67850 -6.39371 0.37641 1.00443 1.34566 1.46527 1.49195 2.09305 2.17652 2.21023 2.77828 3.02298 3.63466 3.68297 3.77922 3.84992 3.95462 4.01968 4.05190 4.26542 4.29146 4.40904 4.42372 4.46671 4.58843 4.65223 4.71329 4.77235 4.86425 4.88433 4.90887 4.91757 4.96945 5.02337 5.05505 5.07069 5.08477 5.12691 5.18664 5.23752 5.25671 5.30344 5.34703 5.42821 5.49437 5.52311 5.54943 5.85893 5.91973 6.04295 6.27812 6.50619 6.59456 6.68830 6.76319 6.86582 6.93798 7.32156 8.28555 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.002944 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.965548 B = 9507.352891 C =10348.761999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.151 3.849 3 C -0.133 4.133 4 C -0.111 4.111 5 C 0.148 3.852 6 N -0.711 5.711 7 C 0.561 3.439 8 O -0.589 6.589 9 C -0.140 4.140 10 C -0.197 4.197 11 C -0.095 4.095 12 C -0.218 4.218 13 C 0.067 3.933 14 C -0.499 4.499 15 H 0.084 0.916 16 C 0.029 3.971 17 N -0.825 5.825 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.251 1.251 22 C -0.131 4.131 23 C -0.115 4.115 24 C 0.157 3.843 25 C -0.178 4.178 26 C -0.135 4.135 27 N -0.711 5.711 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.411 0.589 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.069 0.931 51 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 18.286 -10.338 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.060 3.940 3 C -0.190 4.190 4 C -0.149 4.149 5 C 0.044 3.956 6 N -0.363 5.363 7 C 0.351 3.649 8 O -0.471 6.471 9 C -0.143 4.143 10 C -0.217 4.217 11 C -0.113 4.113 12 C -0.238 4.238 13 C 0.065 3.935 14 C -0.528 4.528 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.450 5.450 18 Si 0.803 3.197 19 H -0.185 1.185 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.152 4.152 23 C -0.154 4.154 24 C 0.066 3.934 25 C -0.238 4.238 26 C -0.193 4.193 27 N -0.348 5.348 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.249 0.751 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.634 17.778 -10.761 20.845 hybrid contribution -1.221 -1.381 0.220 1.856 sum 0.413 16.397 -10.541 19.497 Atomic orbital electron populations 1.22793 0.97376 1.01029 1.02877 1.20244 0.91424 0.94525 0.87800 1.22176 1.01803 0.92750 1.02321 1.21907 1.03504 0.91208 0.98326 1.20901 0.97450 0.94160 0.83117 1.45958 1.44209 1.20057 1.26053 1.18748 0.80388 0.81011 0.84751 1.90665 1.34887 1.62788 1.58714 1.19807 1.01648 0.96852 0.95973 1.20851 1.01735 1.01318 0.97811 1.20924 0.99322 0.94987 0.96059 1.21413 1.00972 0.98448 1.02937 1.17941 0.90526 0.93363 0.91672 1.19847 1.37351 0.99571 0.96004 0.89745 1.26866 0.95494 1.01928 0.94287 1.69894 1.35418 1.35582 1.04127 0.85245 0.78794 0.76823 0.78854 1.18517 1.19698 1.17504 1.21434 1.01046 0.93941 0.98773 1.21951 1.00398 0.98922 0.94116 1.20098 0.93773 0.85664 0.93912 1.22750 0.98700 1.00710 1.01615 1.22189 0.98812 1.00533 0.97811 1.54643 1.68585 1.06516 1.05105 0.91628 0.91341 0.94641 0.92034 0.91720 0.91640 0.90186 0.89490 0.92331 0.75091 0.84603 0.84289 0.87327 0.90366 0.88481 0.90659 0.94400 0.90851 0.93946 0.93868 0.91833 0.93335 0.91195 0.80711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.23 72.10 0.59 -2.50 16 2 C 0.15 2.46 0.93 4.44 0.00 2.47 16 3 C -0.13 -1.59 8.52 72.49 0.62 -0.97 16 4 C -0.11 -2.19 4.13 30.43 0.13 -2.06 16 5 C 0.15 4.18 2.33 44.82 0.10 4.28 16 6 N -0.71 -23.14 5.02 -445.54 -2.24 -25.38 16 7 C 0.56 25.26 7.75 86.80 0.67 25.94 16 8 O -0.59 -31.42 15.98 -3.87 -0.06 -31.48 16 9 C -0.14 -6.72 5.87 -20.14 -0.12 -6.84 16 10 C -0.20 -7.83 9.55 22.70 0.22 -7.61 16 11 C -0.10 -3.79 10.01 22.17 0.22 -3.56 16 12 C -0.22 -10.29 9.78 22.77 0.22 -10.06 16 13 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 14 C -0.50 -27.52 9.05 23.47 0.21 -27.31 16 15 H 0.08 4.38 7.91 -2.91 -0.02 4.35 16 16 C 0.03 1.55 5.14 85.26 0.44 1.99 16 17 N -0.82 -46.83 10.96 21.83 0.24 -46.60 16 18 Si 0.98 40.23 29.60 68.60 2.03 42.26 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 22 C -0.13 -7.43 8.24 23.01 0.19 -7.24 16 23 C -0.11 -3.15 4.25 30.43 0.13 -3.02 16 24 C 0.16 3.31 0.92 4.43 0.00 3.31 16 25 C -0.18 -4.13 8.29 72.09 0.60 -3.53 16 26 C -0.14 -2.49 8.52 72.49 0.62 -1.87 16 27 N -0.71 -11.67 4.80 -430.54 -2.07 -13.73 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.78 5.03 -2.39 -0.01 0.77 16 31 H 0.06 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.50 8.07 -2.26 -0.02 1.48 16 35 H 0.09 1.52 8.05 -2.26 -0.02 1.50 16 36 H 0.06 2.02 5.73 -2.55 -0.01 2.01 16 37 H 0.41 10.85 6.61 -92.71 -0.61 10.24 16 38 H 0.14 4.06 6.38 -2.91 -0.02 4.04 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 40 H 0.11 4.72 8.06 -2.90 -0.02 4.70 16 41 H 0.29 15.03 8.30 -92.70 -0.77 14.26 16 42 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 43 H 0.07 1.94 8.07 -2.27 -0.02 1.92 16 44 H 0.04 1.31 8.02 -2.26 -0.02 1.29 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.04 1.13 8.06 -2.39 -0.02 1.12 16 47 H 0.04 1.12 5.09 -2.39 -0.01 1.11 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.37 4.84 8.82 -89.69 -0.79 4.05 16 Total: -1.00 -69.20 393.97 2.17 -67.02 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.46 Total: 42.92 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.73 Total: -35.01 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -4.06 Total: -85.71 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.20 2.17 -67.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042196611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.345 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds