Wall clock time and date at job start Tue Mar 31 2020 16:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53121 * 109.52107 * 2 1 4 4 C 1.53039 * 109.27993 * 182.38025 * 3 2 1 5 5 N 1.46839 * 109.52501 * 59.18025 * 4 3 2 6 6 C 1.46902 * 111.00262 * 174.16359 * 5 4 3 7 7 C 1.53001 * 109.47180 * 170.00216 * 6 5 4 8 8 C 1.53002 * 109.47125 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47159 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00323 * 179.72389 * 9 8 7 11 11 O 1.21553 * 119.99519 * 0.27153 * 10 9 8 12 12 C 1.47880 * 120.00611 * 180.27439 * 10 9 8 13 13 C 1.39925 * 120.02443 * 359.72135 * 12 10 9 14 14 C 1.38330 * 120.36123 * 179.74294 * 13 12 10 15 15 C 1.37754 * 120.40594 * 0.55846 * 14 13 12 16 16 C 1.40742 * 120.04195 * 359.69926 * 15 14 13 17 17 C 1.41444 * 120.17685 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99839 * 24.43829 * 17 16 15 19 19 C 1.39937 * 120.00013 * 204.43605 * 17 16 15 20 20 N 1.30832 * 119.99820 * 17.88059 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 197.87764 * 19 17 16 22 22 H 1.48503 * 109.46855 * 90.00163 * 21 19 17 23 23 H 1.48491 * 109.47267 * 210.00210 * 21 19 17 24 24 H 1.48501 * 109.47072 * 330.00690 * 21 19 17 25 25 C 1.38992 * 120.03048 * 179.97438 * 12 10 9 26 26 C 1.46848 * 111.19898 * 298.25998 * 5 4 3 27 27 C 1.53041 * 109.52349 * 61.74023 * 26 5 4 28 28 H 1.08997 * 109.47464 * 59.99824 * 1 2 3 29 29 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46840 * 299.99461 * 1 2 3 31 31 H 1.08995 * 109.52868 * 120.12884 * 2 1 3 32 32 H 1.09003 * 109.50511 * 62.43990 * 3 2 1 33 33 H 1.09003 * 109.53997 * 302.33762 * 3 2 1 34 34 H 1.08998 * 109.46360 * 299.16285 * 4 3 2 35 35 H 1.08996 * 109.45546 * 179.19199 * 4 3 2 36 36 H 1.08991 * 109.47210 * 50.00041 * 6 5 4 37 37 H 1.09007 * 109.46885 * 289.99720 * 6 5 4 38 38 H 1.08997 * 109.47396 * 59.99414 * 7 6 5 39 39 H 1.09007 * 109.46806 * 299.99552 * 7 6 5 40 40 H 1.08997 * 109.47507 * 59.99427 * 8 7 6 41 41 H 1.09007 * 109.46867 * 299.99459 * 8 7 6 42 42 H 0.97006 * 120.00260 * 0.02562 * 9 8 7 43 43 H 1.08004 * 119.81989 * 0.02562 * 13 12 10 44 44 H 1.07996 * 119.79631 * 180.28533 * 14 13 12 45 45 H 1.07997 * 119.97533 * 179.72249 * 15 14 13 46 46 H 0.96994 * 119.99746 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.19898 * 359.95629 * 25 12 10 48 48 H 1.08997 * 109.46814 * 181.75887 * 26 5 4 49 49 H 1.08998 * 109.46213 * 301.72298 * 26 5 4 50 50 H 1.09005 * 109.50303 * 180.88528 * 27 26 5 51 51 H 1.08996 * 109.50223 * 60.76106 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4372 -0.0600 5 7 4.0115 0.7428 -1.2764 6 6 5.4685 0.8376 -1.4383 7 6 5.9184 -0.0958 -2.5640 8 6 7.4359 0.0025 -2.7322 9 7 7.8668 -0.8917 -3.8096 10 6 9.1709 -0.9675 -4.1415 11 8 9.9901 -0.2975 -3.5436 12 6 9.6051 -1.8656 -5.2332 13 6 8.6633 -2.6414 -5.9180 14 6 9.0611 -3.4799 -6.9438 15 6 10.3900 -3.5695 -7.2954 16 6 11.3524 -2.8009 -6.6144 17 6 12.7176 -2.8903 -6.9734 18 1 12.9948 -3.2070 -7.9680 19 6 13.7091 -2.5685 -6.0398 20 7 13.4184 -2.5270 -4.7649 21 14 15.4477 -2.1981 -6.6139 22 1 15.5802 -0.7440 -6.8849 23 1 16.4129 -2.5947 -5.5574 24 1 15.7320 -2.9610 -7.8558 25 6 10.9498 -1.9438 -5.5763 26 6 3.5721 -0.6585 -1.2767 27 6 2.0429 -0.7150 -1.2531 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8943 -0.5156 0.8885 32 1 1.7151 1.9451 0.9109 33 1 1.6455 1.9704 -0.8679 34 1 3.9666 0.9226 0.8155 35 1 3.9376 2.4635 -0.0746 36 1 5.9570 0.5471 -0.5084 37 1 5.7404 1.8636 -1.6866 38 1 5.4298 0.1946 -3.4940 39 1 5.6464 -1.1218 -2.3157 40 1 7.9242 -0.2882 -1.8021 41 1 7.7083 1.0284 -2.9803 42 1 7.2130 -1.4261 -4.2871 43 1 7.6195 -2.5819 -5.6473 44 1 8.3259 -4.0712 -7.4693 45 1 10.6934 -4.2298 -8.0944 46 1 14.1058 -2.3043 -4.1178 47 1 11.6806 -1.3493 -5.0482 48 1 3.9400 -1.1543 -2.1749 49 1 3.9679 -1.1633 -0.3955 50 1 1.7174 -1.7552 -1.2374 51 1 1.6468 -0.2224 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049603646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:19 Heat of formation + Delta-G solvation = -38.897130 kcal Electronic energy + Delta-G solvation = -27153.450008 eV Core-core repulsion = 23437.024625 eV Total energy + Delta-G solvation = -3716.425383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.68673 -39.11788 -37.08247 -36.01199 -34.34529 -33.71161 -31.67361 -31.05014 -29.98452 -29.42563 -28.09882 -25.44362 -24.79128 -23.82446 -22.63744 -21.85314 -21.06306 -20.82955 -19.97432 -19.37882 -17.69678 -16.61805 -15.99459 -15.87859 -15.44386 -15.12250 -15.00443 -14.82802 -14.59651 -14.57232 -14.36721 -13.87771 -13.67886 -13.21271 -13.19504 -12.77624 -12.64081 -12.53937 -12.46749 -12.33918 -12.15780 -11.64359 -11.63202 -11.54877 -11.45801 -11.18245 -11.11116 -11.03682 -10.93755 -10.72403 -10.59932 -10.49242 -10.41230 -10.01459 -9.68872 -9.21712 -9.01255 -8.65643 -8.56673 -7.62692 -7.51955 -6.79992 -4.41323 2.21820 2.81745 3.07959 3.11198 3.16044 3.46366 3.81274 3.88079 3.92467 4.39921 4.44492 4.46121 4.64136 4.76086 4.83865 4.95351 4.97115 5.08753 5.12616 5.18783 5.27899 5.32693 5.37104 5.40980 5.52805 5.55189 5.59091 5.61468 5.63472 5.70394 5.76560 5.81638 5.84392 5.84828 6.03936 6.05610 6.10681 6.15105 6.27750 6.72208 6.78847 6.82309 6.88989 6.99278 7.02447 7.21613 7.38458 7.70504 7.76367 7.93053 8.10319 8.19699 8.50964 8.80450 8.83747 8.96627 10.14775 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.001840 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.337176 B =15214.010149 C =16031.390789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.059 3.941 7 C -0.134 4.134 8 C 0.123 3.877 9 N -0.737 5.737 10 C 0.563 3.437 11 O -0.547 6.547 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.092 4.092 26 C 0.046 3.954 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.284 0.716 47 H 0.134 0.866 48 H 0.084 0.916 49 H 0.032 0.968 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.864 5.133 9.162 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.069 4.069 7 C -0.172 4.172 8 C -0.001 4.001 9 N -0.391 5.391 10 C 0.354 3.646 11 O -0.425 6.425 12 C -0.132 4.132 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.232 4.232 16 C 0.096 3.904 17 C -0.489 4.489 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.112 4.112 26 C -0.082 4.082 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.096 0.904 47 H 0.152 0.848 48 H 0.102 0.898 49 H 0.050 0.950 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.374 5.890 9.462 23.224 hybrid contribution 0.803 -0.576 0.396 1.065 sum -19.571 5.314 9.858 22.548 Atomic orbital electron populations 1.21807 0.95105 1.01653 1.01748 1.21197 0.95635 0.96268 0.98336 1.21644 0.94577 0.96509 1.02128 1.22083 0.95843 0.99004 0.90384 1.61991 1.12275 1.14246 1.37658 1.22015 0.86858 1.00606 0.97398 1.21944 0.95133 1.00249 0.99891 1.21140 0.93230 0.94703 0.91064 1.45924 1.08960 1.46267 1.37985 1.18847 0.81133 0.81552 0.83076 1.90695 1.52481 1.45176 1.54162 1.19480 0.95438 1.00304 0.97945 1.20339 0.96245 1.04969 1.02265 1.20435 0.95505 0.98501 0.97172 1.21097 0.93044 1.03847 1.05218 1.17608 0.93238 0.88971 0.90627 1.19601 0.90203 1.39961 0.99126 0.90043 1.25973 1.01774 0.92582 0.94295 1.69794 1.36235 1.32919 1.01798 0.86263 0.80817 0.79880 0.79513 1.19138 1.20236 1.18565 1.21642 0.92736 0.98295 0.98571 1.22251 0.95695 0.88987 1.01247 1.21658 0.94727 1.00248 0.98311 0.92557 0.92755 0.92841 0.91681 0.91696 0.91017 0.94989 0.90713 0.94504 0.90175 0.90275 0.91004 0.92031 0.91785 0.76592 0.89249 0.88896 0.88614 0.90439 0.84846 0.89789 0.95004 0.91615 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.20 37.15 0.34 -0.50 16 2 C -0.10 -0.65 2.79 -90.50 -0.25 -0.90 16 3 C -0.11 -0.76 5.38 -26.65 -0.14 -0.90 16 4 C 0.05 0.43 5.42 -3.84 -0.02 0.41 16 5 N -0.54 -4.83 4.81 -234.68 -1.13 -5.95 16 6 C 0.06 0.55 5.27 -3.82 -0.02 0.53 16 7 C -0.13 -1.35 4.58 -26.73 -0.12 -1.47 16 8 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 9 N -0.74 -12.21 5.51 -61.24 -0.34 -12.55 16 10 C 0.56 12.47 7.77 -12.31 -0.10 12.38 16 11 O -0.55 -13.94 16.33 5.32 0.09 -13.85 16 12 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 13 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 14 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 15 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 16 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 17 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 19 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 20 N -0.78 -20.89 10.96 55.55 0.61 -20.28 16 21 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 26 C 0.05 0.39 4.85 -3.83 -0.02 0.37 16 27 C -0.11 -0.82 5.38 -26.65 -0.14 -0.96 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.69 6.21 -51.92 -0.32 0.37 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 42 H 0.40 5.68 6.49 -40.82 -0.26 5.41 16 43 H 0.09 1.54 6.38 -52.48 -0.33 1.21 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 47 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 48 H 0.08 0.71 5.81 -51.93 -0.30 0.40 16 49 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -29.85 401.18 -12.04 -41.89 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.68 Total: 8.29 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.61 Total: -17.44 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.86 Total: -38.78 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.85 -12.04 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049603646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.989 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds