Wall clock time and date at job start Tue Mar 31 2020 16:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53121 * 109.52107 * 2 1 4 4 C 1.53039 * 109.27993 * 182.38025 * 3 2 1 5 5 N 1.46839 * 109.52501 * 59.18025 * 4 3 2 6 6 C 1.46902 * 111.00262 * 174.16359 * 5 4 3 7 7 C 1.53001 * 109.47180 * 170.00216 * 6 5 4 8 8 C 1.53002 * 109.47125 * 180.02562 * 7 6 5 9 9 N 1.46495 * 109.47159 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00323 * 179.72389 * 9 8 7 11 11 O 1.21553 * 119.99519 * 0.27153 * 10 9 8 12 12 C 1.47880 * 120.00611 * 180.27439 * 10 9 8 13 13 C 1.39925 * 120.02443 * 359.72135 * 12 10 9 14 14 C 1.38330 * 120.36123 * 179.74294 * 13 12 10 15 15 C 1.37754 * 120.40594 * 0.55846 * 14 13 12 16 16 C 1.40742 * 120.04195 * 359.69926 * 15 14 13 17 17 C 1.41444 * 120.17685 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99839 * 24.43829 * 17 16 15 19 19 C 1.39937 * 120.00013 * 204.43605 * 17 16 15 20 20 N 1.30832 * 119.99820 * 17.88059 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 197.87764 * 19 17 16 22 22 H 1.48503 * 109.46855 * 90.00163 * 21 19 17 23 23 H 1.48491 * 109.47267 * 210.00210 * 21 19 17 24 24 H 1.48501 * 109.47072 * 330.00690 * 21 19 17 25 25 C 1.38992 * 120.03048 * 179.97438 * 12 10 9 26 26 C 1.46848 * 111.19898 * 298.25998 * 5 4 3 27 27 C 1.53041 * 109.52349 * 61.74023 * 26 5 4 28 28 H 1.08997 * 109.47464 * 59.99824 * 1 2 3 29 29 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46840 * 299.99461 * 1 2 3 31 31 H 1.08995 * 109.52868 * 120.12884 * 2 1 3 32 32 H 1.09003 * 109.50511 * 62.43990 * 3 2 1 33 33 H 1.09003 * 109.53997 * 302.33762 * 3 2 1 34 34 H 1.08998 * 109.46360 * 299.16285 * 4 3 2 35 35 H 1.08996 * 109.45546 * 179.19199 * 4 3 2 36 36 H 1.08991 * 109.47210 * 50.00041 * 6 5 4 37 37 H 1.09007 * 109.46885 * 289.99720 * 6 5 4 38 38 H 1.08997 * 109.47396 * 59.99414 * 7 6 5 39 39 H 1.09007 * 109.46806 * 299.99552 * 7 6 5 40 40 H 1.08997 * 109.47507 * 59.99427 * 8 7 6 41 41 H 1.09007 * 109.46867 * 299.99459 * 8 7 6 42 42 H 0.97006 * 120.00260 * 0.02562 * 9 8 7 43 43 H 1.08004 * 119.81989 * 0.02562 * 13 12 10 44 44 H 1.07996 * 119.79631 * 180.28533 * 14 13 12 45 45 H 1.07997 * 119.97533 * 179.72249 * 15 14 13 46 46 H 0.96994 * 119.99746 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.19898 * 359.95629 * 25 12 10 48 48 H 1.08997 * 109.46814 * 181.75887 * 26 5 4 49 49 H 1.08998 * 109.46213 * 301.72298 * 26 5 4 50 50 H 1.09005 * 109.50303 * 180.88528 * 27 26 5 51 51 H 1.08996 * 109.50223 * 60.76106 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4372 -0.0600 5 7 4.0115 0.7428 -1.2764 6 6 5.4685 0.8376 -1.4383 7 6 5.9184 -0.0958 -2.5640 8 6 7.4359 0.0025 -2.7322 9 7 7.8668 -0.8917 -3.8096 10 6 9.1709 -0.9675 -4.1415 11 8 9.9901 -0.2975 -3.5436 12 6 9.6051 -1.8656 -5.2332 13 6 8.6633 -2.6414 -5.9180 14 6 9.0611 -3.4799 -6.9438 15 6 10.3900 -3.5695 -7.2954 16 6 11.3524 -2.8009 -6.6144 17 6 12.7176 -2.8903 -6.9734 18 1 12.9948 -3.2070 -7.9680 19 6 13.7091 -2.5685 -6.0398 20 7 13.4184 -2.5270 -4.7649 21 14 15.4477 -2.1981 -6.6139 22 1 15.5802 -0.7440 -6.8849 23 1 16.4129 -2.5947 -5.5574 24 1 15.7320 -2.9610 -7.8558 25 6 10.9498 -1.9438 -5.5763 26 6 3.5721 -0.6585 -1.2767 27 6 2.0429 -0.7150 -1.2531 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8943 -0.5156 0.8885 32 1 1.7151 1.9451 0.9109 33 1 1.6455 1.9704 -0.8679 34 1 3.9666 0.9226 0.8155 35 1 3.9376 2.4635 -0.0746 36 1 5.9570 0.5471 -0.5084 37 1 5.7404 1.8636 -1.6866 38 1 5.4298 0.1946 -3.4940 39 1 5.6464 -1.1218 -2.3157 40 1 7.9242 -0.2882 -1.8021 41 1 7.7083 1.0284 -2.9803 42 1 7.2130 -1.4261 -4.2871 43 1 7.6195 -2.5819 -5.6473 44 1 8.3259 -4.0712 -7.4693 45 1 10.6934 -4.2298 -8.0944 46 1 14.1058 -2.3043 -4.1178 47 1 11.6806 -1.3493 -5.0482 48 1 3.9400 -1.1543 -2.1749 49 1 3.9679 -1.1633 -0.3955 50 1 1.7174 -1.7552 -1.2374 51 1 1.6468 -0.2224 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049603646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:18 Heat of formation + Delta-G solvation = -56.165739 kcal Electronic energy + Delta-G solvation = -27154.198831 eV Core-core repulsion = 23437.024625 eV Total energy + Delta-G solvation = -3717.174206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93771 -40.21999 -38.85146 -37.01112 -35.68668 -35.35959 -32.82850 -31.87155 -31.44643 -31.23213 -28.87586 -27.23881 -25.93013 -24.49402 -23.84410 -23.01238 -22.69432 -21.86911 -21.00742 -20.53754 -19.46811 -18.01063 -17.33753 -16.97367 -16.87629 -16.53255 -16.28892 -15.91867 -15.70159 -15.38510 -15.24798 -15.06505 -14.90224 -14.89563 -14.39916 -14.26449 -13.96965 -13.56894 -13.40037 -13.26919 -13.04976 -12.96941 -12.83450 -12.77437 -12.53077 -12.44323 -12.28598 -12.17221 -12.10635 -11.89387 -11.86032 -11.52236 -11.50242 -11.15842 -11.08727 -11.02344 -10.78913 -10.16095 -9.47446 -9.38651 -9.26710 -8.67136 -6.38642 0.37580 1.00621 1.35953 1.47892 1.50509 2.09629 2.18776 2.21133 2.78235 2.93986 3.69707 3.80924 3.85349 3.89626 3.95515 4.00813 4.03460 4.17454 4.34243 4.42491 4.44421 4.49192 4.50919 4.59655 4.62590 4.63886 4.73396 4.77502 4.84695 4.86418 4.91162 4.95485 5.04776 5.08490 5.12667 5.13873 5.17138 5.19603 5.26092 5.30766 5.31234 5.36300 5.45786 5.52240 5.56342 5.86521 5.92445 6.05277 6.11744 6.16775 6.28577 6.51103 6.68682 6.87529 6.94461 7.30557 8.29751 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.001840 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.337176 B =15214.010149 C =16031.390789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.107 4.107 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.061 3.939 7 C -0.117 4.117 8 C 0.122 3.878 9 N -0.712 5.712 10 C 0.559 3.441 11 O -0.591 6.591 12 C -0.140 4.140 13 C -0.197 4.197 14 C -0.096 4.096 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.826 5.826 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.250 1.250 25 C -0.132 4.132 26 C 0.043 3.957 27 C -0.109 4.109 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.414 0.586 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.109 0.891 46 H 0.286 0.714 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.639 4.568 8.668 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.075 4.075 5 N -0.267 5.267 6 C -0.067 4.067 7 C -0.155 4.155 8 C -0.002 4.002 9 N -0.365 5.365 10 C 0.349 3.651 11 O -0.473 6.473 12 C -0.144 4.144 13 C -0.216 4.216 14 C -0.113 4.113 15 C -0.237 4.237 16 C 0.063 3.937 17 C -0.527 4.527 18 H 0.103 0.897 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.173 1.173 25 C -0.153 4.153 26 C -0.084 4.084 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.127 0.873 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.045 0.955 50 H 0.092 0.908 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.222 5.307 8.959 25.450 hybrid contribution 1.417 -0.416 0.569 1.582 sum -21.806 4.890 9.528 24.294 Atomic orbital electron populations 1.21776 0.94284 1.01965 1.01986 1.21198 0.96312 0.95998 0.97929 1.21622 0.93700 0.96727 1.02439 1.22142 0.96613 0.98966 0.89825 1.62026 1.11679 1.14718 1.38266 1.21956 0.87381 1.00423 0.96926 1.21807 0.91945 1.01152 1.00606 1.21300 0.95743 0.93613 0.89501 1.45722 1.07142 1.45814 1.37869 1.18758 0.82590 0.81115 0.82670 1.90671 1.54164 1.46916 1.55567 1.19797 0.95010 1.00946 0.98612 1.20868 0.97936 1.02353 1.00461 1.20938 0.95300 0.98234 0.96875 1.21418 0.93995 1.03270 1.04989 1.17961 0.94324 0.89891 0.91485 1.19878 0.91068 1.42112 0.99633 0.89747 1.26871 1.05962 0.91760 0.94034 1.69895 1.37604 1.34602 1.03046 0.85179 0.75502 0.79486 0.79430 1.19150 1.19415 1.17284 1.21447 0.93789 0.99816 1.00201 1.22303 0.96476 0.88573 1.01072 1.21641 0.93904 1.00782 0.98343 0.92604 0.92423 0.92326 0.91983 0.90643 0.91488 0.95299 0.90480 0.94824 0.90125 0.89454 0.89955 0.92940 0.92377 0.74817 0.84411 0.84222 0.87312 0.90324 0.88419 0.89595 0.95495 0.90827 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 71.98 0.66 -0.71 16 2 C -0.10 -1.12 2.79 -10.72 -0.03 -1.15 16 3 C -0.11 -1.29 5.38 30.65 0.16 -1.12 16 4 C 0.05 0.75 5.42 86.33 0.47 1.22 16 5 N -0.54 -8.76 4.81 -896.38 -4.31 -13.07 16 6 C 0.06 1.05 5.27 86.30 0.46 1.50 16 7 C -0.12 -2.08 4.58 30.60 0.14 -1.94 16 8 C 0.12 3.20 5.67 86.38 0.49 3.69 16 9 N -0.71 -22.30 5.51 -465.94 -2.57 -24.87 16 10 C 0.56 24.83 7.77 86.80 0.67 25.51 16 11 O -0.59 -31.34 16.33 -3.88 -0.06 -31.40 16 12 C -0.14 -6.69 5.87 -20.13 -0.12 -6.81 16 13 C -0.20 -7.66 9.55 22.70 0.22 -7.44 16 14 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 15 C -0.22 -10.15 9.78 22.77 0.22 -9.93 16 16 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 17 C -0.50 -27.35 9.05 23.47 0.21 -27.14 16 18 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 19 C 0.03 1.51 5.14 85.25 0.44 1.95 16 20 N -0.83 -46.67 10.96 21.83 0.24 -46.43 16 21 Si 0.98 40.06 29.60 68.60 2.03 42.09 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 23 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.13 -7.42 8.24 23.01 0.19 -7.23 16 26 C 0.04 0.64 4.85 86.33 0.42 1.06 16 27 C -0.11 -1.37 5.38 30.65 0.16 -1.21 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.03 0.60 8.08 -2.39 -0.02 0.58 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.33 6.21 -2.38 -0.01 1.32 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.41 10.26 6.49 -92.70 -0.60 9.66 16 43 H 0.14 3.98 6.38 -2.91 -0.02 3.96 16 44 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 45 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 46 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 47 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 48 H 0.09 1.21 5.81 -2.39 -0.01 1.20 16 49 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -69.18 401.18 0.51 -68.66 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.31 Total: 34.81 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 4.87 Total: -29.80 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -6.63 Total: -84.36 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.06 Total: -31.40 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -69.18 0.51 -68.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049603646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.498 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds